ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48650 AT1G48650 |
| fragaria_vesca | FvH4_5g16860 |
| malus_domestica | MD06G1222500.v1.1 MD14G1231600.v1.1 |
| prunus_persica | Prupe.5G227100_v2.0.a1 |
| pyrus_communis | pycom06g19810 pycom06g19820 pycom14g19280 |
| rosa_chinensis | RchiOBHm_Chr7g0179211 |
| rosa_laevigata | RLG00000005374 |
| rosa_multiflora | Rmu_sc0009798.1_g000005 Rmu_sc0021799.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00274220 |
| rosa_rugosa | Rorug06G0422200 |
| rosa_samantha | Rh7BG021500 |
| rosa_wichuraiana | Rw7G001770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1720 |
| AatII | GACGTC | 2 cut(s) | 258, 2419 |
| Acc65I | GGTACC | 2 cut(s) | 180, 3340 |
| AccB1I | GGYRCC | 5 cut(s) | 180, 328, 3304, 3340, 3356 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1970 |
| AccI | GTMKAC | 1 cut(s) | 2281 |
| AccII | CGCG | 4 cut(s) | 241, 260, 386, 540 |
| AclWI | GGATC | 9 cut(s) | 1480, 1866, 1883, 2486, 2499, 2525, 2568, 3178, 3276 |
| AcoI | YGGCCR | 2 cut(s) | 662, 1406 |
| AcsI | RAATTY | 5 cut(s) | 346, 870, 1846, 2958, 3001 |
| AcuI | CTGAAG | 2 cut(s) | 860, 3579 |
| AcyI | GRCGYC | 4 cut(s) | 255, 378, 402, 2416 |
| AfeI | AGCGCT | 1 cut(s) | 3246 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 22, 411, 1883, 1970, 2133, 2314, 2450, 3423 |
| AflII | CTTAAG | 1 cut(s) | 3629 |
| AflIII | ACRYGT | 1 cut(s) | 1324 |
| AhlI | ACTAGT | 1 cut(s) | 2012 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3194, 3226 |
| Alw21I | GWGCWC | 3 cut(s) | 1480, 1522, 3048 |
| Alw26I | GTCTC | 7 cut(s) | 279, 423, 1033, 1728, 2003, 2060, 3265 |
| AlwI | GGATC | 9 cut(s) | 1480, 1866, 1883, 2486, 2499, 2525, 2568, 3178, 3276 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3557 |
| Ama87I | CYCGRG | 3 cut(s) | 276, 1496, 2929 |
| Aor51HI | AGCGCT | 1 cut(s) | 3246 |
| AoxI | GGCC | 8 cut(s) | 140, 662, 1406, 1802, 2124, 2316, 2515, 3079 |
| ApeKI | GCWGC | 9 cut(s) | 151, 310, 829, 1060, 1175, 1685, 2323, 3551, 3554 |
| ApoI | RAATTY | 5 cut(s) | 346, 870, 1846, 2958, 3001 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2263, 2295 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1368, 2296, 2738 |
| Asp718I | GGTACC | 2 cut(s) | 180, 3340 |
| AspLEI | GCGC | 3 cut(s) | 426, 1811, 3247 |
| AspS9I | GGNCC | 4 cut(s) | 39, 105, 1900, 3660 |
| AsuC2I | CCSGG | 5 cut(s) | 1252, 1497, 1498, 3017, 3424 |
| AsuHPI | GGTGA | 3 cut(s) | 3004, 3389, 3406 |
| AsuNHI | GCTAGC | 1 cut(s) | 1909 |
| AvaI | CYCGRG | 3 cut(s) | 276, 1496, 2929 |
| AvaII | GGWCC | 4 cut(s) | 39, 105, 1900, 3660 |
| BaeGI | GKGCMC | 2 cut(s) | 3093, 3315 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3332, 3365 |
| BamHI | GGATCC | 1 cut(s) | 2491 |
| BanI | GGYRCC | 5 cut(s) | 180, 328, 3304, 3340, 3356 |
| BanII | GRGCYC | 1 cut(s) | 840 |
| BbsI | GAAGAC | 1 cut(s) | 2971 |
| Bbv12I | GWGCWC | 3 cut(s) | 1480, 1522, 3048 |
| BbvCI | CCTCAGC | 2 cut(s) | 314, 627 |
| BbvI | GCAGC | 9 cut(s) | 138, 322, 841, 1072, 1162, 1672, 2335, 3541, 3563 |
| BccI | CCATC | 9 cut(s) | 462, 568, 806, 1964, 2116, 2190, 2630, 2903, 3080 |
| BceAI | ACGGC | 4 cut(s) | 127, 316, 573, 1817 |
| BciVI | GTATCC | 1 cut(s) | 3104 |
| BclI | TGATCA | 3 cut(s) | 547, 2608, 3610 |
| BcnI | CCSGG | 5 cut(s) | 1252, 1497, 1498, 3017, 3424 |
| BcoDI | GTCTC | 7 cut(s) | 279, 423, 1033, 1728, 2003, 2060, 3265 |
| BcuI | ACTAGT | 1 cut(s) | 2012 |
| BfaI | CTAG | 9 cut(s) | 600, 1137, 1541, 1662, 1893, 1910, 1932, 1991, 2013 |
| BfmI | CTRYAG | 2 cut(s) | 1114, 1176 |
| BfoI | RGCGCY | 2 cut(s) | 427, 3248 |
| BfrI | CTTAAG | 1 cut(s) | 3629 |
| BfuI | GTATCC | 1 cut(s) | 3104 |
| BglII | AGATCT | 1 cut(s) | 2398 |
| BlpI | GCTNAGC | 1 cut(s) | 1449 |
| BmcAI | AGTACT | 1 cut(s) | 2678 |
| Bme18I | GGWCC | 4 cut(s) | 39, 105, 1900, 3660 |
| BmeT110I | CYCGRG | 3 cut(s) | 276, 1496, 2929 |
| BmgT120I | GGNCC | 4 cut(s) | 39, 105, 1900, 3660 |
| BmrI | ACTGGG | 3 cut(s) | 419, 1505, 1560 |
| BmtI | GCTAGC | 1 cut(s) | 1913 |
| BmuI | ACTGGG | 3 cut(s) | 419, 1505, 1560 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2507 |
| BpiI | GAAGAC | 1 cut(s) | 2971 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1442, 1474 |
| BpmI | CTGGAG | 3 cut(s) | 912, 1550, 2704 |
| Bpu10I | CCTNAGC | 2 cut(s) | 314, 627 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1449 |
| BpuEI | CTTGAG | 2 cut(s) | 1611, 2738 |
| BpuMI | CCSGG | 5 cut(s) | 1252, 1497, 1498, 3017, 3424 |
| Bsa29I | ATCGAT | 2 cut(s) | 2529, 3271 |
| BsaBI | GATNNNNATC | 4 cut(s) | 546, 714, 2814, 3609 |
| BsaHI | GRCGYC | 4 cut(s) | 255, 378, 402, 2416 |
| BsaI | GGTCTC | 1 cut(s) | 3265 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1712, 1742 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 22, 411, 1883, 1970, 2133, 2314, 2450, 3423 |
| Bse118I | RCCGGY | 2 cut(s) | 177, 1404 |
| Bse1I | ACTGG | 9 cut(s) | 414, 567, 1511, 1555, 2495, 3031, 3261, 3308, 3469 |
| Bse3DI | GCAATG | 1 cut(s) | 3407 |
| Bse8I | GATNNNNATC | 4 cut(s) | 546, 714, 2814, 3609 |
| BseCI | ATCGAT | 2 cut(s) | 2529, 3271 |
| BseJI | GATNNNNATC | 4 cut(s) | 546, 714, 2814, 3609 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 22, 411, 1883, 1970, 2133, 2314, 2450, 3423 |
| BseMI | GCAATG | 1 cut(s) | 3407 |
| BseNI | ACTGG | 9 cut(s) | 414, 567, 1511, 1555, 2495, 3031, 3261, 3308, 3469 |
| BseRI | GAGGAG | 4 cut(s) | 331, 407, 1300, 1450 |
| BseSI | GKGCMC | 2 cut(s) | 3093, 3315 |
| BseXI | GCAGC | 9 cut(s) | 138, 322, 841, 1072, 1162, 1672, 2335, 3541, 3563 |
| BseYI | CCCAGC | 3 cut(s) | 154, 1131, 3103 |
| Bsh1236I | CGCG | 4 cut(s) | 241, 260, 386, 540 |
| Bsh1285I | CGRYCG | 1 cut(s) | 115 |
| BshFI | GGCC | 8 cut(s) | 142, 664, 1408, 1804, 2126, 2318, 2517, 3081 |
| BshNI | GGYRCC | 5 cut(s) | 180, 328, 3304, 3340, 3356 |
| BshVI | ATCGAT | 2 cut(s) | 2529, 3271 |
| BsiEI | CGRYCG | 1 cut(s) | 115 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1480, 1522, 3048 |
| BsiHKCI | CYCGRG | 3 cut(s) | 276, 1496, 2929 |
| BsiSI | CCGG | 6 cut(s) | 178, 1252, 1405, 1497, 3016, 3423 |
| BslFI | GGGAC | 4 cut(s) | 37, 118, 266, 1259 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 22, 411, 1883, 1970, 2133, 2314, 2450, 3423 |
| BsmAI | GTCTC | 7 cut(s) | 279, 423, 1033, 1728, 2003, 2060, 3265 |
| BsmBI | CGTCTC | 2 cut(s) | 279, 423 |
| BsmFI | GGGAC | 4 cut(s) | 37, 118, 266, 1259 |
| BsmI | GAATGC | 1 cut(s) | 226 |
| BsnI | GGCC | 8 cut(s) | 142, 664, 1408, 1804, 2126, 2318, 2517, 3081 |
| Bso31I | GGTCTC | 1 cut(s) | 3265 |
| BsoBI | CYCGRG | 3 cut(s) | 276, 1496, 2929 |
| Bsp1286I | GDGCHC | 6 cut(s) | 840, 1480, 1522, 3048, 3093, 3315 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1449 |
| Bsp19I | CCATGG | 3 cut(s) | 861, 1152, 2969 |
| BspANI | GGCC | 8 cut(s) | 142, 664, 1408, 1804, 2126, 2318, 2517, 3081 |
| BspDI | ATCGAT | 2 cut(s) | 2529, 3271 |
| BspFNI | CGCG | 4 cut(s) | 241, 260, 386, 540 |
| BspHI | TCATGA | 4 cut(s) | 1345, 1594, 2596, 3126 |
| BspMAI | CTGCAG | 2 cut(s) | 1118, 1180 |
| BspOI | GCTAGC | 1 cut(s) | 1913 |
| BspPI | GGATC | 9 cut(s) | 1480, 1866, 1883, 2486, 2499, 2525, 2568, 3178, 3276 |
| BspQI | GCTCTTC | 1 cut(s) | 1640 |
| BspT107I | GGYRCC | 5 cut(s) | 180, 328, 3304, 3340, 3356 |
| BspTI | CTTAAG | 1 cut(s) | 3629 |
| BspTNI | GGTCTC | 1 cut(s) | 3265 |
| BsrDI | GCAATG | 1 cut(s) | 3407 |
| BsrFI | RCCGGY | 2 cut(s) | 177, 1404 |
| BsrI | ACTGG | 9 cut(s) | 414, 567, 1511, 1555, 2495, 3031, 3261, 3308, 3469 |
| BssAI | RCCGGY | 2 cut(s) | 177, 1404 |
| BssNI | GRCGYC | 4 cut(s) | 255, 378, 402, 2416 |
| BssT1I | CCWWGG | 5 cut(s) | 751, 861, 1152, 1709, 2969 |
| Bst4CI | ACNGT | 9 cut(s) | 85, 363, 1706, 2407, 2486, 2506, 2586, 2606, 2664 |
| Bst6I | CTCTTC | 3 cut(s) | 23, 1640, 2733 |
| BstACI | GRCGYC | 4 cut(s) | 255, 378, 402, 2416 |
| BstAFI | CTTAAG | 1 cut(s) | 3629 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3519 |
| BstC8I | GCNNGC | 7 cut(s) | 226, 262, 890, 969, 1406, 1911, 2515 |
| BstDSI | CCRYGG | 4 cut(s) | 861, 1152, 1269, 2969 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 20, 2312 |
| BstFNI | CGCG | 4 cut(s) | 241, 260, 386, 540 |
| BstH2I | RGCGCY | 2 cut(s) | 427, 3248 |
| BstHHI | GCGC | 3 cut(s) | 426, 1811, 3247 |
| BstMAI | GTCTC | 7 cut(s) | 279, 423, 1033, 1728, 2003, 2060, 3265 |
| BstMCI | CGRYCG | 1 cut(s) | 115 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 148, 266, 307, 835, 904, 2573, 3519, 3560 |
| BstNSI | RCATGY | 2 cut(s) | 1328, 1917 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2507 |
| BstSFI | CTRYAG | 2 cut(s) | 1114, 1176 |
| BstSLI | GKGCMC | 2 cut(s) | 3093, 3315 |
| BstUI | CGCG | 4 cut(s) | 241, 260, 386, 540 |
| BstV1I | GCAGC | 9 cut(s) | 138, 322, 841, 1072, 1162, 1672, 2335, 3541, 3563 |
| BstV2I | GAAGAC | 1 cut(s) | 2971 |
| BstX2I | RGATCY | 4 cut(s) | 1888, 2398, 2491, 2560 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 434, 2970 |
| BstYI | RGATCY | 4 cut(s) | 1888, 2398, 2491, 2560 |
| Bsu15I | ATCGAT | 2 cut(s) | 2529, 3271 |
| BsuI | GTATCC | 1 cut(s) | 3104 |
| BsuRI | GGCC | 8 cut(s) | 142, 664, 1408, 1804, 2126, 2318, 2517, 3081 |
| BsuTUI | ATCGAT | 2 cut(s) | 2529, 3271 |
| BtgI | CCRYGG | 4 cut(s) | 861, 1152, 1269, 2969 |
| BtsI | GCAGTG | 1 cut(s) | 193 |
| BtsIMutI | CAGTG | 7 cut(s) | 193, 560, 2412, 2433, 2611, 3315, 3489 |
| Cac8I | GCNNGC | 7 cut(s) | 226, 262, 890, 969, 1406, 1911, 2515 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3557 |
| CciI | TCATGA | 4 cut(s) | 1345, 1594, 2596, 3126 |
| CfoI | GCGC | 3 cut(s) | 426, 1811, 3247 |
| Cfr10I | RCCGGY | 2 cut(s) | 177, 1404 |
| Cfr13I | GGNCC | 4 cut(s) | 39, 105, 1900, 3660 |
| Cfr9I | CCCGGG | 1 cut(s) | 1496 |
| ClaI | ATCGAT | 2 cut(s) | 2529, 3271 |
| CseI | GACGC | 6 cut(s) | 230, 386, 410, 546, 1098, 3557 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3589, 3624 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1720 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1720 |
| EaeI | YGGCCR | 2 cut(s) | 662, 1406 |
| Eam1104I | CTCTTC | 3 cut(s) | 23, 1640, 2733 |
| EarI | CTCTTC | 3 cut(s) | 23, 1640, 2733 |
| EciI | GGCGGA | 2 cut(s) | 195, 299 |
| Eco130I | CCWWGG | 5 cut(s) | 751, 861, 1152, 1709, 2969 |
| Eco147I | AGGCCT | 2 cut(s) | 2318, 2517 |
| Eco24I | GRGCYC | 1 cut(s) | 840 |
| Eco31I | GGTCTC | 1 cut(s) | 3265 |
| Eco32I | GATATC | 1 cut(s) | 1146 |
| Eco47I | GGWCC | 4 cut(s) | 39, 105, 1900, 3660 |
| Eco47III | AGCGCT | 1 cut(s) | 3246 |
| Eco57I | CTGAAG | 2 cut(s) | 860, 3579 |
| Eco88I | CYCGRG | 3 cut(s) | 276, 1496, 2929 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 20, 2312 |
| EcoO109I | RGGNCCY | 3 cut(s) | 105, 1900, 3660 |
| EcoRI | GAATTC | 1 cut(s) | 3001 |
| EcoRV | GATATC | 1 cut(s) | 1146 |
| EcoT14I | CCWWGG | 5 cut(s) | 751, 861, 1152, 1709, 2969 |
| EcoT38I | GRGCYC | 1 cut(s) | 840 |
| ErhI | CCWWGG | 5 cut(s) | 751, 861, 1152, 1709, 2969 |
| Esp3I | CGTCTC | 2 cut(s) | 279, 423 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1209, 1241, 1356, 1388, 2726, 2758 |
| FaqI | GGGAC | 4 cut(s) | 37, 118, 266, 1259 |
| FauI | CCCGC | 3 cut(s) | 95, 1236, 2755 |
| FauNDI | CATATG | 2 cut(s) | 2074, 3615 |
| FbaI | TGATCA | 3 cut(s) | 547, 2608, 3610 |
| FblI | GTMKAC | 1 cut(s) | 2281 |
| FriOI | GRGCYC | 1 cut(s) | 840 |
| FspBI | CTAG | 9 cut(s) | 600, 1137, 1541, 1662, 1893, 1910, 1932, 1991, 2013 |
| GlaI | GCGC | 3 cut(s) | 425, 1810, 3246 |
| GsaI | CCCAGC | 3 cut(s) | 158, 1135, 3107 |
| GsuI | CTGGAG | 3 cut(s) | 912, 1550, 2704 |
| HaeII | RGCGCY | 2 cut(s) | 427, 3248 |
| HaeIII | GGCC | 8 cut(s) | 142, 664, 1408, 1804, 2126, 2318, 2517, 3081 |
| HapII | CCGG | 6 cut(s) | 178, 1252, 1405, 1497, 3016, 3423 |
| HgaI | GACGC | 6 cut(s) | 230, 386, 410, 546, 1098, 3557 |
| HhaI | GCGC | 3 cut(s) | 426, 1811, 3247 |
| Hin1I | GRCGYC | 4 cut(s) | 255, 378, 402, 2416 |
| Hin6I | GCGC | 3 cut(s) | 424, 1809, 3245 |
| HinP1I | GCGC | 3 cut(s) | 424, 1809, 3245 |
| HincII | GTYRAC | 3 cut(s) | 477, 1300, 2773 |
| HindII | GTYRAC | 3 cut(s) | 477, 1300, 2773 |
| HindIII | AAGCTT | 1 cut(s) | 886 |
| HpaI | GTTAAC | 1 cut(s) | 477 |
| HpaII | CCGG | 6 cut(s) | 178, 1252, 1405, 1497, 3016, 3423 |
| HphI | GGTGA | 3 cut(s) | 3004, 3389, 3406 |
| Hpy166II | GTNNAC | 9 cut(s) | 477, 581, 1300, 1503, 2267, 2282, 2773, 2872, 3600 |
| Hpy8I | GTNNAC | 9 cut(s) | 477, 581, 1300, 1503, 2267, 2282, 2773, 2872, 3600 |
| Hpy99I | CGWCG | 3 cut(s) | 148, 260, 404 |
| HpyAV | CCTTC | 7 cut(s) | 926, 1223, 1849, 2551, 3316, 3331, 3538 |
| HpyCH4III | ACNGT | 9 cut(s) | 85, 363, 1706, 2407, 2486, 2506, 2586, 2606, 2664 |
| HpyCH4IV | ACGT | 3 cut(s) | 255, 1351, 2416 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 148, 266, 307, 835, 904, 2573, 3519, 3560 |
| HpySE526I | ACGT | 3 cut(s) | 255, 1351, 2416 |
| Hsp92I | GRCGYC | 4 cut(s) | 255, 378, 402, 2416 |
| HspAI | GCGC | 3 cut(s) | 424, 1809, 3245 |
| KflI | GGGWCCC | 1 cut(s) | 105 |
| KpnI | GGTACC | 2 cut(s) | 184, 3344 |
| KroI | GCCGGC | 1 cut(s) | 1404 |
| KroNI | GCCGGC | 1 cut(s) | 1406 |
| Ksp22I | TGATCA | 3 cut(s) | 547, 2608, 3610 |
| KspAI | GTTAAC | 1 cut(s) | 477 |
| LguI | GCTCTTC | 1 cut(s) | 1640 |
| Lsp1109I | GCAGC | 9 cut(s) | 138, 322, 841, 1072, 1162, 1672, 2335, 3541, 3563 |
| MaeI | CTAG | 9 cut(s) | 600, 1137, 1541, 1662, 1893, 1910, 1932, 1991, 2013 |
| MaeII | ACGT | 3 cut(s) | 255, 1351, 2416 |
| MaeIII | GTNAC | 5 cut(s) | 127, 1211, 1318, 2177, 2417 |
| MflI | RGATCY | 4 cut(s) | 1888, 2398, 2491, 2560 |
| MhlI | GDGCHC | 6 cut(s) | 840, 1480, 1522, 3048, 3093, 3315 |
| MlyI | GAGTC | 7 cut(s) | 404, 1708, 1730, 1739, 2239, 2579, 2717 |
| MmeI | TCCRAC | 3 cut(s) | 423, 1715, 2621 |
| MroNI | GCCGGC | 1 cut(s) | 1404 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1368, 2296, 2738 |
| MseI | TTAA | 8 cut(s) | 476, 995, 1758, 3161, 3350, 3575, 3630, 3688 |
| MslI | CAYNNNNRTG | 3 cut(s) | 47, 1350, 2968 |
| MspA1I | CMGCKG | 4 cut(s) | 211, 313, 880, 3554 |
| MspCI | CTTAAG | 1 cut(s) | 3629 |
| MspI | CCGG | 6 cut(s) | 178, 1252, 1405, 1497, 3016, 3423 |
| Mva1269I | GAATGC | 1 cut(s) | 226 |
| MvnI | CGCG | 4 cut(s) | 241, 260, 386, 540 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 148, 266, 307, 835, 904, 2573, 3519, 3560 |
| NaeI | GCCGGC | 1 cut(s) | 1406 |
| NciI | CCSGG | 5 cut(s) | 1252, 1497, 1498, 3017, 3424 |
| NcoI | CCATGG | 3 cut(s) | 861, 1152, 2969 |
| NdeI | CATATG | 2 cut(s) | 2074, 3615 |
| NgoMIV | GCCGGC | 1 cut(s) | 1404 |
| NheI | GCTAGC | 1 cut(s) | 1909 |
| NmeAIII | GCCGAG | 1 cut(s) | 2113 |
| NmuCI | GTSAC | 1 cut(s) | 2417 |
| NspI | RCATGY | 2 cut(s) | 1328, 1917 |
| PaeR7I | CTCGAG | 1 cut(s) | 2929 |
| PagI | TCATGA | 4 cut(s) | 1345, 1594, 2596, 3126 |
| PceI | AGGCCT | 2 cut(s) | 2318, 2517 |
| PciI | ACATGT | 1 cut(s) | 1324 |
| PciSI | GCTCTTC | 1 cut(s) | 1640 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 329 |
| PctI | GAATGC | 1 cut(s) | 226 |
| PdiI | GCCGGC | 1 cut(s) | 1406 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1368, 2296, 2738 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1970 |
| PfoI | TCCNGGA | 2 cut(s) | 2111, 3015 |
| PleI | GAGTC | 7 cut(s) | 403, 1708, 1729, 1739, 2239, 2578, 2717 |
| PpsI | GAGTC | 7 cut(s) | 403, 1708, 1729, 1739, 2239, 2578, 2717 |
| PpuMI | RGGWCCY | 3 cut(s) | 105, 1900, 3660 |
| PscI | ACATGT | 1 cut(s) | 1324 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2507 |
| Psp5II | RGGWCCY | 3 cut(s) | 105, 1900, 3660 |
| PspFI | CCCAGC | 3 cut(s) | 154, 1131, 3103 |
| PspPI | GGNCC | 4 cut(s) | 39, 105, 1900, 3660 |
| PspPPI | RGGWCCY | 3 cut(s) | 105, 1900, 3660 |
| PspXI | VCTCGAGB | 1 cut(s) | 2929 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 164, 196, 3371, 3403 |
| PstI | CTGCAG | 2 cut(s) | 1118, 1180 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3557 |
| PsuI | RGATCY | 4 cut(s) | 1888, 2398, 2491, 2560 |
| PvuII | CAGCTG | 2 cut(s) | 313, 3554 |
| RseI | CAYNNNNRTG | 3 cut(s) | 47, 1350, 2968 |
| SapI | GCTCTTC | 1 cut(s) | 1640 |
| SaqAI | TTAA | 8 cut(s) | 476, 995, 1758, 3161, 3350, 3575, 3630, 3688 |
| Sau96I | GGNCC | 4 cut(s) | 39, 105, 1900, 3660 |
| ScaI | AGTACT | 1 cut(s) | 2678 |
| SchI | GAGTC | 7 cut(s) | 404, 1708, 1730, 1739, 2239, 2579, 2717 |
| SduI | GDGCHC | 6 cut(s) | 840, 1480, 1522, 3048, 3093, 3315 |
| SfcI | CTRYAG | 2 cut(s) | 1114, 1176 |
| Sfr274I | CTCGAG | 1 cut(s) | 2929 |
| SinI | GGWCC | 4 cut(s) | 39, 105, 1900, 3660 |
| SlaI | CTCGAG | 1 cut(s) | 2929 |
| SmaI | CCCGGG | 1 cut(s) | 1498 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 47, 1350, 2968 |
| SmlI | CTYRAG | 4 cut(s) | 1626, 2753, 2929, 3629 |
| SmoI | CTYRAG | 4 cut(s) | 1626, 2753, 2929, 3629 |
| SpeI | ACTAGT | 1 cut(s) | 2012 |
| SseBI | AGGCCT | 2 cut(s) | 2318, 2517 |
| SspI | AATATT | 1 cut(s) | 1537 |
| SspMI | CTAG | 9 cut(s) | 600, 1137, 1541, 1662, 1893, 1910, 1932, 1991, 2013 |
| StuI | AGGCCT | 2 cut(s) | 2318, 2517 |
| StyI | CCWWGG | 5 cut(s) | 751, 861, 1152, 1709, 2969 |
| TaaI | ACNGT | 9 cut(s) | 85, 363, 1706, 2407, 2486, 2506, 2586, 2606, 2664 |
| TaiI | ACGT | 3 cut(s) | 258, 1354, 2419 |
| TaqI | TCGA | 7 cut(s) | 146, 440, 2529, 2885, 2930, 3271, 3620 |
| TatI | WGTACW | 5 cut(s) | 1071, 1675, 1701, 2676, 3565 |
| TauI | GCSGC | 8 cut(s) | 120, 123, 211, 241, 284, 664, 2129, 2548 |
| Tru1I | TTAA | 8 cut(s) | 476, 995, 1758, 3161, 3350, 3575, 3630, 3688 |
| Tru9I | TTAA | 8 cut(s) | 476, 995, 1758, 3161, 3350, 3575, 3630, 3688 |
| TscAI | CASTG | 7 cut(s) | 200, 567, 2412, 2433, 2611, 3315, 3489 |
| TseFI | GTSAC | 1 cut(s) | 2417 |
| TseI | GCWGC | 9 cut(s) | 151, 310, 829, 1060, 1175, 1685, 2323, 3551, 3554 |
| Tsp45I | GTSAC | 1 cut(s) | 2417 |
| TspGWI | ACGGA | 3 cut(s) | 1156, 2238, 3464 |
| TspMI | CCCGGG | 1 cut(s) | 1496 |
| TspRI | CASTG | 7 cut(s) | 200, 567, 2412, 2433, 2611, 3315, 3489 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1970 |
| Vha464I | CTTAAG | 1 cut(s) | 3629 |
| VpaK11BI | GGWCC | 4 cut(s) | 39, 105, 1900, 3660 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 20, 2312 |
| XapI | RAATTY | 5 cut(s) | 346, 870, 1846, 2958, 3001 |
| XbaI | TCTAGA | 2 cut(s) | 599, 1540 |
| XceI | RCATGY | 2 cut(s) | 1328, 1917 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3079 |
| XhoI | CTCGAG | 1 cut(s) | 2929 |
| XmaI | CCCGGG | 1 cut(s) | 1496 |
| XmiI | GTMKAC | 1 cut(s) | 2281 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1368, 2296, 2738 |
| XspI | CTAG | 9 cut(s) | 600, 1137, 1541, 1662, 1893, 1910, 1932, 1991, 2013 |
| ZraI | GACGTC | 2 cut(s) | 256, 2417 |
| ZrmI | AGTACT | 1 cut(s) | 2678 |