Rmu_sc0009798.1_g000005

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009798.1
OG0013882
Physical Location & Seq
Forward (+)
14131 .. 19983
5853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009798.1_g000005.1.cds

Sequence Viewer

Length: 2919 bp
atgtcaaggtcaaatagtaatggaagtatagctaaagacgggggactctacgagcaggaggagcccttgatacagaatagtgttgccatggagagaattcttcagcagaaaagcttgcgattgctcaataagcaacaagaatggcaggaatccatcgaaggtcaaaagatgcttgaacttcgtagaagtctacctgcatataaagagaaagattccttgttaaaagccatatccgaaaatcaggtcatagttgtctcaggtgaaacaggttgtggtaaaactacacaacttcctcagtacattttagaatctgagattgaagctggtcgtggaggtgtctgtagtattatttgtactcagcctagacgaatatctgccatgtctgtttctgaaagagttgctgcagaacgaggggagaatctgggggaatcagttggttacaaagttaggctggaaggaatgaaagggagggacacgcggcttcttttttgcaccacaggcatactattgagaagattacttgtcgacagaaagttgagaggtgttacacatgtcattgttgatgagattcatgaacgtggaatgaatgaagattttcttcttatcgttctgaaagaacttctctctcgccgtcctgagttgagattgattttgatgagtgcaaccttaaatgctgagcttttctcctcgtactttaatggtgctccaatgatccatatacctggttttacatacccggtccgagcacattttctggagaatattctagaaatgactggatatcggttaaatcaatataatcaaattgatgattatggtcaagataagacgtggaaaatgcagaaacaagctcaagctttcaaaaagaggaagagccaaattgcttctaccgttgaggatgcacttgaagctgctgactttagggagtacagtccaaggactcaggagtctctgtcctgttggaatccggactccattggttttaatctcattgagcatgcgctttgccacatagtcaggaaagaaaggcctggtgctattttggtttttatgactggttgggatgacataaactccttgaaggatcaactccaatctcatccccttttaggagatcctagtagggtcctgctgcttgcctgtcatggttccatgcctagctctgaacagaggttgatatttgataaaccagaagatggagttaggaaaatcgttctggctacaaacatggctgagaccagtatcactatcaatgatgtagtatttgtgattgattgtggaaaggcgaaagaaacatcatatgatgcactcaataatactccctgtttgcttccatcctggatatcaaaggctgcttcccggcaaagaagaggaagagccggtcgtgttcaacccggcgagtgttaccatctgtatccccgatgtgtatatgatgcctttgctgattatcaattgcctgaacttttgaggacacctctgcagtctctatgtttacaaatcaagagtctacaacttggaagtatttctgagttcctttctaaggcactgcagtcaccggaacctttgtcggttcaaaatgctgttgattatctgaagatcataggggctttagatgacaatgaagatctcacagtattaggtcgccacctgtcaatgcttcctgttgagccaaaacttgggaaaatgctcatattaggggctatcttcaactgtttagatccaataatgactattgttgcaggccttagtatgagagatccattcatgatgccatttgacaagaaggatcttgcggaatcagcgaaagcacaattttctggccgtgataacagcgatcatctggctcttatccgagcatatgatggttggaaaaatgctgaaagatcgcaagctggttatgagtactgctggagaaattttctttctgcacaaactctaaaagccattgactctcttcggaagcagttcttcttcttgctcaaggatgctggtttggttgatcacaacattgagaactgcaatacattgagttatgatgaacagcttatccgagcaatcatctgtgcaggattatttcctggaatatgttctgttgtgaacaaagagaagtcgatttcgttgaaaacaatggaagatggacaagtacttctatactcgaattctgtcaatgcttcggtgcctaaaattccatatccatggctagttttcaacgaaaaggtgaaagtgaattcagtattccttcgggattcaactggcgtctctgattctgtgctccttttgtttggaggcaacatttccaggggtggactggatgggcacctgaagatgttgggaggatacttggagtttttcatgaatcctgcattatcaaatacatatcttagcttaaagagggaacttgaggaactgattcataataagcttatagatcccaaattggatatgcaatctcatactaacctcctatcagccctaagattactggtctctgaagacagatgtgatggtagatttgtctttggtcgcaagatgccagtaccctcaaagaagataacgaaagagttaggtccaggcaccttgagggttggcgataatggtaaaagcgggggtaacaattccaaaagtcagctgcaaacattgcttgtcagagcaggacatgaagctcccacctacaaaacaaaacaactgaaaaacaaccagtttcggtccacggtgatcttcaatgggttgaactttgtagggcagccttccaatagtaagaaacaagcagagaaggaagcggctgctgaagctgtgctctggttaaagggcgataaccattcatcttccacagatattgaccatatgtcaatgcttctaaagaagagtagaaagaaaatccataaaacgacctcatttgatagcgctaagtggagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001047 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042221 GO:0042623 GO:0042826 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043330 GO:0043331 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind dsrm

Protein Analysis

972

Amino Acids

109.0

Weight (kDa)

8.68

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48650 AT1G48650
fragaria_vesca FvH4_5g16860
malus_domestica MD06G1222500.v1.1 MD14G1231600.v1.1
prunus_persica Prupe.5G227100_v2.0.a1
pyrus_communis pycom06g19810 pycom06g19820 pycom14g19280
rosa_chinensis RchiOBHm_Chr7g0179211
rosa_laevigata RLG00000005374
rosa_multiflora Rmu_sc0009798.1_g000005 Rmu_sc0021799.1_g000001
rosa_roxburghii Rroxscaffold_3G00274220
rosa_rugosa Rorug06G0422200
rosa_samantha Rh7BG021500
rosa_wichuraiana Rw7G001770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 946
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 3 cut(s) 2176, 2316, 2573
AccB7I CCANNNNNTGG 2 cut(s) 1196, 1676
AccI GTMKAC 3 cut(s) 190, 525, 1507
AccII CGCG 1 cut(s) 478
AccIII TCCGGA 1 cut(s) 967
AciI CCGC 4 cut(s) 478, 1793, 2604, 2780
AclWI GGATC 7 cut(s) 706, 1092, 1109, 1712, 1751, 1794, 2423
AcoI YGGCCR 1 cut(s) 1819
AcsI RAATTY 5 cut(s) 96, 1915, 2158, 2184, 2227
AcuI CTGAAG 5 cut(s) 86, 1613, 2342, 2511, 2808
AcyI GRCGYC 1 cut(s) 2256
AfaI GTAC 7 cut(s) 299, 355, 692, 929, 1904, 2145, 2538
AfeI AGCGCT 1 cut(s) 2905
AfiI CCNNNNNNNGG 4 cut(s) 1109, 1196, 1540, 1676
AflIII ACRYGT 1 cut(s) 550
AhdI GACNNNNNGTC 1 cut(s) 2845
AjiI CACGTC 1 cut(s) 831
AjnI CCWGG 6 cut(s) 721, 1030, 1337, 2077, 2297, 2569
AloI GAACNNNNNNTCC 2 cut(s) 2031, 2063
Alw21I GWGCWC 4 cut(s) 706, 748, 2274, 2799
Alw26I GTCTC 6 cut(s) 259, 954, 1229, 1488, 2263, 2491
AlwI GGATC 7 cut(s) 706, 1092, 1109, 1712, 1751, 1794, 2423
Aor13HI TCCGGA 1 cut(s) 967
Aor51HI AGCGCT 1 cut(s) 2905
AoxI GGCC 3 cut(s) 1028, 1741, 1819
ApeKI GCWGC 7 cut(s) 401, 911, 1132, 1352, 2629, 2743, 2783
ApoI RAATTY 5 cut(s) 96, 1915, 2158, 2184, 2227
ArsI GACNNNNNNTTYG 4 cut(s) 228, 260, 1489, 1521
Asp700I GAANNNNTTC 5 cut(s) 594, 1522, 1964, 2086, 2409
AspLEI GCGC 2 cut(s) 1003, 2906
AspS9I GGNCC 4 cut(s) 739, 1126, 2567, 2706
AsuC2I CCSGG 3 cut(s) 737, 1360, 1395
AsuHPI GGTGA 4 cut(s) 272, 1545, 2230, 2725
AvaII GGWCC 4 cut(s) 739, 1126, 2567, 2706
BaeGI GKGCMC 1 cut(s) 2319
BanI GGYRCC 3 cut(s) 2176, 2316, 2573
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 2499
Bbv12I GWGCWC 4 cut(s) 706, 748, 2274, 2799
BbvI GCAGC 7 cut(s) 388, 898, 1119, 1339, 2616, 2755, 2770
BccI CCATC 8 cut(s) 161, 1190, 1342, 1416, 1856, 2129, 2306, 2498
BceAI ACGGC 2 cut(s) 615, 1806
BciT130I CCWGG 6 cut(s) 723, 1032, 1339, 2079, 2299, 2571
BciVI GTATCC 2 cut(s) 1425, 2330
BclI TGATCA 1 cut(s) 1999
BcnI CCSGG 3 cut(s) 737, 1360, 1395
BcoDI GTCTC 6 cut(s) 259, 954, 1229, 1488, 2263, 2491
BfaI CTAG 5 cut(s) 363, 767, 1119, 1158, 2201
BfmI CTRYAG 4 cut(s) 340, 402, 1478, 1547
BfoI RGCGCY 1 cut(s) 2907
BfuAI ACCTGC 1 cut(s) 202
BfuI GTATCC 2 cut(s) 1425, 2330
BglII AGATCT 1 cut(s) 1624
BisI GCNGC 9 cut(s) 402, 479, 912, 1133, 1353, 2630, 2744, 2781, 2784
BlpI GCTNAGC 1 cut(s) 675
BlsI GCNGC 9 cut(s) 403, 480, 913, 1134, 1354, 2631, 2745, 2782, 2785
BmcAI AGTACT 2 cut(s) 1904, 2145
Bme1390I CCNGG 9 cut(s) 723, 737, 1032, 1339, 1360, 1395, 2079, 2299, 2571
Bme18I GGWCC 4 cut(s) 739, 1126, 2567, 2706
BmeRI GACNNNNNGTC 1 cut(s) 2845
BmgBI CACGTC 1 cut(s) 831
BmgT120I GGNCC 4 cut(s) 739, 1126, 2567, 2706
BmiI GGNNCC 7 cut(s) 63, 1127, 1150, 1560, 2178, 2318, 2575
BmrFI CCNGG 9 cut(s) 723, 737, 1032, 1339, 1360, 1395, 2079, 2299, 2571
BmsI GCATC 7 cut(s) 159, 889, 1294, 1423, 1758, 1975, 2520
BpiI GAAGAC 1 cut(s) 2499
BplI GAGNNNNNCTC 4 cut(s) 668, 700, 1459, 1491
BpmI CTGGAG 2 cut(s) 776, 1930
Bpu1102I GCTNAGC 1 cut(s) 675
BpuEI CTTGAG 4 cut(s) 837, 1964, 2420, 2599
BpuMI CCSGG 3 cut(s) 737, 1360, 1395
BsaHI GRCGYC 1 cut(s) 2256
BsaI GGTCTC 2 cut(s) 1229, 2491
BsaJI CCNNGG 5 cut(s) 87, 935, 2195, 2298, 2709
BsaWI WCCGGW 2 cut(s) 967, 1555
BsaXI ACNNNNNCTCC 4 cut(s) 938, 968, 1058, 1088
Bsc4I CCNNNNNNNGG 4 cut(s) 1109, 1196, 1540, 1676
Bse118I RCCGGY 1 cut(s) 1379
Bse1I ACTGG 8 cut(s) 781, 1060, 1239, 2257, 2313, 2487, 2534, 2698
Bse3DI GCAATG 1 cut(s) 2636
BseAI TCCGGA 1 cut(s) 967
BseBI CCWGG 6 cut(s) 723, 1032, 1339, 2079, 2299, 2571
BseDI CCNNGG 5 cut(s) 87, 935, 2195, 2298, 2709
BseGI GGATG 6 cut(s) 904, 1069, 1099, 1334, 1990, 2317
BseLI CCNNNNNNNGG 4 cut(s) 1109, 1196, 1540, 1676
BseMI GCAATG 1 cut(s) 2636
BseMII CTCAG 9 cut(s) 270, 303, 308, 371, 627, 666, 956, 1224, 1518
BseNI ACTGG 8 cut(s) 781, 1060, 1239, 2257, 2313, 2487, 2534, 2698
BseRI GAGGAG 2 cut(s) 74, 676
BseSI GKGCMC 1 cut(s) 2319
BseXI GCAGC 7 cut(s) 388, 898, 1119, 1339, 2616, 2755, 2770
BsgI GTGCAG 2 cut(s) 1911, 2085
Bsh1236I CGCG 1 cut(s) 478
Bsh1285I CGRYCG 1 cut(s) 1384
BshFI GGCC 3 cut(s) 1030, 1743, 1821
BshNI GGYRCC 3 cut(s) 2176, 2316, 2573
BsiEI CGRYCG 1 cut(s) 1384
BsiHKAI GWGCWC 4 cut(s) 706, 748, 2274, 2799
BsiSI CCGG 6 cut(s) 737, 968, 1360, 1380, 1395, 1556
BslFI GGGAC 2 cut(s) 57, 485
BslI CCNNNNNNNGG 4 cut(s) 1109, 1196, 1540, 1676
BsmAI GTCTC 6 cut(s) 259, 954, 1229, 1488, 2263, 2491
BsmBI CGTCTC 1 cut(s) 2263
BsmFI GGGAC 2 cut(s) 57, 485
BsnI GGCC 3 cut(s) 1030, 1743, 1821
Bso31I GGTCTC 2 cut(s) 1229, 2491
Bsp1286I GDGCHC 6 cut(s) 66, 706, 748, 2274, 2319, 2799
Bsp13I TCCGGA 1 cut(s) 967
Bsp1720I GCTNAGC 1 cut(s) 675
Bsp19I CCATGG 2 cut(s) 87, 2195
BspACI CCGC 4 cut(s) 478, 1793, 2604, 2780
BspANI GGCC 3 cut(s) 1030, 1743, 1821
BspCNI CTCAG 9 cut(s) 269, 304, 307, 370, 628, 667, 955, 1225, 1519
BspEI TCCGGA 1 cut(s) 967
BspFNI CGCG 1 cut(s) 478
BspHI TCATGA 3 cut(s) 571, 1764, 2352
BspLI GGNNCC 7 cut(s) 63, 1127, 1150, 1560, 2178, 2318, 2575
BspMAI CTGCAG 3 cut(s) 406, 1482, 1551
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 7 cut(s) 706, 1092, 1109, 1712, 1751, 1794, 2423
BspQI GCTCTTC 2 cut(s) 866, 1369
BspT107I GGYRCC 3 cut(s) 2176, 2316, 2573
BspTNI GGTCTC 2 cut(s) 1229, 2491
BsrDI GCAATG 1 cut(s) 2636
BsrFI RCCGGY 1 cut(s) 1379
BsrI ACTGG 8 cut(s) 781, 1060, 1239, 2257, 2313, 2487, 2534, 2698
BssAI RCCGGY 1 cut(s) 1379
BssECI CCNNGG 5 cut(s) 87, 935, 2195, 2298, 2709
BssNI GRCGYC 1 cut(s) 2256
BssT1I CCWWGG 3 cut(s) 87, 935, 2195
Bst2UI CCWGG 6 cut(s) 723, 1032, 1339, 2079, 2299, 2571
Bst4CI ACNGT 5 cut(s) 892, 932, 1633, 1712, 2713
Bst6I CTCTTC 5 cut(s) 866, 1363, 1369, 1959, 2858
BstACI GRCGYC 1 cut(s) 2256
BstAPI GCANNNNNTGC 1 cut(s) 2638
BstC8I GCNNGC 5 cut(s) 116, 999, 1137, 1741, 1890
BstDSI CCRYGG 3 cut(s) 87, 2195, 2709
BstENI CCTNNNNNAGG 1 cut(s) 1538
BstF5I GGATG 6 cut(s) 904, 1069, 1099, 1334, 1990, 2317
BstFNI CGCG 1 cut(s) 478
BstH2I RGCGCY 1 cut(s) 2907
BstHHI GCGC 2 cut(s) 1003, 2906
BstMAI GTCTC 6 cut(s) 259, 954, 1229, 1488, 2263, 2491
BstMCI CGRYCG 1 cut(s) 1384
BstMWI GCNNNNNNNGC 7 cut(s) 61, 130, 498, 908, 1799, 2638, 2789
BstNI CCWGG 6 cut(s) 723, 1032, 1339, 2079, 2299, 2571
BstNSI RCATGY 2 cut(s) 554, 1001
BstSCI CCNGG 9 cut(s) 721, 735, 1030, 1337, 1358, 1393, 2077, 2297, 2569
BstSFI CTRYAG 4 cut(s) 340, 402, 1478, 1547
BstSLI GKGCMC 1 cut(s) 2319
BstUI CGCG 1 cut(s) 478
BstV1I GCAGC 7 cut(s) 388, 898, 1119, 1339, 2616, 2755, 2770
BstV2I GAAGAC 1 cut(s) 2499
BstX2I RGATCY 6 cut(s) 1114, 1624, 1717, 1756, 1786, 2428
BstXI CCANNNNNNTGG 2 cut(s) 722, 2196
BstYI RGATCY 6 cut(s) 1114, 1624, 1717, 1756, 1786, 2428
BsuI GTATCC 2 cut(s) 1425, 2330
BsuRI GGCC 3 cut(s) 1030, 1743, 1821
BtgI CCRYGG 3 cut(s) 87, 2195, 2709
BtrI CACGTC 1 cut(s) 831
BtsCI GGATG 6 cut(s) 904, 1069, 1099, 1334, 1990, 2317
BtsI GCAGTG 1 cut(s) 1544
BtsIMutI CAGTG 1 cut(s) 1544
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 5 cut(s) 116, 999, 1137, 1741, 1890
CciI TCATGA 3 cut(s) 571, 1764, 2352
CfoI GCGC 2 cut(s) 1003, 2906
Cfr10I RCCGGY 1 cut(s) 1379
Cfr13I GGNCC 4 cut(s) 739, 1126, 2567, 2706
CpoI CGGWCCG 1 cut(s) 739
CseI GACGC 1 cut(s) 2245
CsiI ACCWGGT 1 cut(s) 721
Csp6I GTAC 7 cut(s) 298, 354, 691, 928, 1903, 2144, 2537
CspCI CAANNNNNGTGG 2 cut(s) 2818, 2853
CspI CGGWCCG 1 cut(s) 739
CviQI GTAC 7 cut(s) 298, 354, 691, 928, 1903, 2144, 2537
DrdI GACNNNNNNGTC 1 cut(s) 946
DriI GACNNNNNGTC 1 cut(s) 2845
DseDI GACNNNNNNGTC 1 cut(s) 946
EaeI YGGCCR 1 cut(s) 1819
Eam1104I CTCTTC 5 cut(s) 866, 1363, 1369, 1959, 2858
Eam1105I GACNNNNNGTC 1 cut(s) 2845
EarI CTCTTC 5 cut(s) 866, 1363, 1369, 1959, 2858
Eco130I CCWWGG 3 cut(s) 87, 935, 2195
Eco147I AGGCCT 2 cut(s) 1030, 1743
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 2 cut(s) 1229, 2491
Eco32I GATATC 2 cut(s) 782, 1344
Eco47I GGWCC 4 cut(s) 739, 1126, 2567, 2706
Eco47III AGCGCT 1 cut(s) 2905
Eco57I CTGAAG 5 cut(s) 86, 1613, 2342, 2511, 2808
EcoNI CCTNNNNNAGG 1 cut(s) 1538
EcoO109I RGGNCCY 1 cut(s) 1126
EcoRI GAATTC 3 cut(s) 96, 2158, 2227
EcoRII CCWGG 6 cut(s) 721, 1030, 1337, 2077, 2297, 2569
EcoRV GATATC 2 cut(s) 782, 1344
EcoT14I CCWWGG 3 cut(s) 87, 935, 2195
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 3 cut(s) 87, 935, 2195
Esp3I CGTCTC 1 cut(s) 2263
FalI AAGNNNNNCTT 4 cut(s) 582, 614, 1952, 1984
FaqI GGGAC 2 cut(s) 57, 485
FauI CCCGC 1 cut(s) 2597
FauNDI CATATG 3 cut(s) 1300, 1858, 2844
FbaI TGATCA 1 cut(s) 1999
FblI GTMKAC 3 cut(s) 190, 525, 1507
Fnu4HI GCNGC 9 cut(s) 402, 479, 912, 1133, 1353, 2630, 2744, 2781, 2784
FokI GGATG 6 cut(s) 911, 1076, 1086, 1321, 1997, 2324
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 9 cut(s) 402, 479, 912, 1133, 1353, 2630, 2744, 2781, 2784
FspBI CTAG 5 cut(s) 363, 767, 1119, 1158, 2201
GlaI GCGC 2 cut(s) 1002, 2905
GluI GCNGC 9 cut(s) 402, 479, 912, 1133, 1353, 2630, 2744, 2781, 2784
GsuI CTGGAG 2 cut(s) 776, 1930
HaeII RGCGCY 1 cut(s) 2907
HaeIII GGCC 3 cut(s) 1030, 1743, 1821
HapII CCGG 6 cut(s) 737, 968, 1360, 1380, 1395, 1556
HgaI GACGC 1 cut(s) 2245
HhaI GCGC 2 cut(s) 1003, 2906
Hin1I GRCGYC 1 cut(s) 2256
Hin6I GCGC 2 cut(s) 1001, 2904
HinP1I GCGC 2 cut(s) 1001, 2904
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HindIII AAGCTT 3 cut(s) 112, 855, 2420
HpaII CCGG 6 cut(s) 737, 968, 1360, 1380, 1395, 1556
HphI GGTGA 4 cut(s) 272, 1545, 2230, 2725
Hpy166II GTNNAC 7 cut(s) 191, 526, 1493, 1508, 2098, 2306, 2709
Hpy8I GTNNAC 7 cut(s) 191, 526, 1493, 1508, 2098, 2306, 2709
HpyAV CCTTC 7 cut(s) 152, 449, 1075, 1777, 2249, 2757, 2767
HpyCH4III ACNGT 5 cut(s) 892, 932, 1633, 1712, 2713
HpyCH4IV ACGT 2 cut(s) 577, 830
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 130, 498, 908, 1799, 2638, 2789
HpySE526I ACGT 2 cut(s) 577, 830
Hsp92I GRCGYC 1 cut(s) 2256
HspAI GCGC 2 cut(s) 1001, 2904
Kpn2I TCCGGA 1 cut(s) 967
Ksp22I TGATCA 1 cut(s) 1999
LguI GCTCTTC 2 cut(s) 866, 1369
LmnI GCTCC 4 cut(s) 61, 709, 2277, 2668
Lsp1109I GCAGC 7 cut(s) 388, 898, 1119, 1339, 2616, 2755, 2770
LweI GCATC 7 cut(s) 159, 889, 1294, 1423, 1758, 1975, 2520
MabI ACCWGGT 1 cut(s) 721
MaeI CTAG 5 cut(s) 363, 767, 1119, 1158, 2201
MaeII ACGT 2 cut(s) 577, 830
MaeIII GTNAC 5 cut(s) 437, 544, 1403, 1551, 2609
MfeI CAATTG 1 cut(s) 1451
MflI RGATCY 6 cut(s) 1114, 1624, 1717, 1756, 1786, 2428
MhlI GDGCHC 6 cut(s) 66, 706, 748, 2274, 2319, 2799
MlyI GAGTC 6 cut(s) 39, 934, 956, 965, 1513, 1943
MmeI TCCRAC 2 cut(s) 941, 1847
MroI TCCGGA 1 cut(s) 967
MroXI GAANNNNTTC 5 cut(s) 594, 1522, 1964, 2086, 2409
MseI TTAA 7 cut(s) 221, 668, 696, 788, 984, 2387, 2804
MslI CAYNNNNRTG 2 cut(s) 576, 2194
MspA1I CMGCKG 1 cut(s) 2629
MspI CCGG 6 cut(s) 737, 968, 1360, 1380, 1395, 1556
MspR9I CCNGG 9 cut(s) 723, 737, 1032, 1339, 1360, 1395, 2079, 2299, 2571
MunI CAATTG 1 cut(s) 1451
MvaI CCWGG 6 cut(s) 723, 1032, 1339, 2079, 2299, 2571
MvnI CGCG 1 cut(s) 478
MwoI GCNNNNNNNGC 7 cut(s) 61, 130, 498, 908, 1799, 2638, 2789
NciI CCSGG 3 cut(s) 737, 1360, 1395
NcoI CCATGG 2 cut(s) 87, 2195
NdeI CATATG 3 cut(s) 1300, 1858, 2844
NlaIV GGNNCC 7 cut(s) 63, 1127, 1150, 1560, 2178, 2318, 2575
NmuCI GTSAC 1 cut(s) 1551
NspI RCATGY 2 cut(s) 554, 1001
PaeI GCATGC 1 cut(s) 1001
PagI TCATGA 3 cut(s) 571, 1764, 2352
PceI AGGCCT 2 cut(s) 1030, 1743
PciI ACATGT 1 cut(s) 550
PciSI GCTCTTC 2 cut(s) 866, 1369
PdmI GAANNNNTTC 5 cut(s) 594, 1522, 1964, 2086, 2409
PflMI CCANNNNNTGG 2 cut(s) 1196, 1676
PfoI TCCNGGA 2 cut(s) 1337, 2077
PkrI GCNGC 9 cut(s) 403, 480, 913, 1134, 1354, 2631, 2745, 2782, 2785
PleI GAGTC 6 cut(s) 39, 934, 955, 965, 1512, 1943
PpsI GAGTC 6 cut(s) 39, 934, 955, 965, 1512, 1943
PpuMI RGGWCCY 1 cut(s) 1126
PscI ACATGT 1 cut(s) 550
Psp5II RGGWCCY 1 cut(s) 1126
Psp6I CCWGG 6 cut(s) 721, 1030, 1337, 2077, 2297, 2569
PspGI CCWGG 6 cut(s) 721, 1030, 1337, 2077, 2297, 2569
PspN4I GGNNCC 7 cut(s) 63, 1127, 1150, 1560, 2178, 2318, 2575
PspPI GGNCC 4 cut(s) 739, 1126, 2567, 2706
PspPPI RGGWCCY 1 cut(s) 1126
PstI CTGCAG 3 cut(s) 406, 1482, 1551
PsuI RGATCY 6 cut(s) 1114, 1624, 1717, 1756, 1786, 2428
PvuII CAGCTG 1 cut(s) 2629
RsaI GTAC 7 cut(s) 299, 355, 692, 929, 1904, 2145, 2538
RsaNI GTAC 7 cut(s) 298, 354, 691, 928, 1903, 2144, 2537
RseI CAYNNNNRTG 2 cut(s) 576, 2194
Rsr2I CGGWCCG 1 cut(s) 739
RsrII CGGWCCG 1 cut(s) 739
SalI GTCGAC 1 cut(s) 524
SapI GCTCTTC 2 cut(s) 866, 1369
SaqAI TTAA 7 cut(s) 221, 668, 696, 788, 984, 2387, 2804
SatI GCNGC 9 cut(s) 402, 479, 912, 1133, 1353, 2630, 2744, 2781, 2784
Sau96I GGNCC 4 cut(s) 739, 1126, 2567, 2706
ScaI AGTACT 2 cut(s) 1904, 2145
SchI GAGTC 6 cut(s) 39, 934, 956, 965, 1513, 1943
ScrFI CCNGG 9 cut(s) 723, 737, 1032, 1339, 1360, 1395, 2079, 2299, 2571
SduI GDGCHC 6 cut(s) 66, 706, 748, 2274, 2319, 2799
SexAI ACCWGGT 1 cut(s) 721
SfaNI GCATC 7 cut(s) 159, 889, 1294, 1423, 1758, 1975, 2520
SfcI CTRYAG 4 cut(s) 340, 402, 1478, 1547
SinI GGWCC 4 cut(s) 739, 1126, 2567, 2706
SmiMI CAYNNNNRTG 2 cut(s) 576, 2194
SmlI CTYRAG 4 cut(s) 852, 1979, 2399, 2578
SmoI CTYRAG 4 cut(s) 852, 1979, 2399, 2578
SphI GCATGC 1 cut(s) 1001
SseBI AGGCCT 2 cut(s) 1030, 1743
SsiI CCGC 4 cut(s) 478, 1793, 2604, 2780
SspI AATATT 1 cut(s) 763
SspMI CTAG 5 cut(s) 363, 767, 1119, 1158, 2201
StuI AGGCCT 2 cut(s) 1030, 1743
StyD4I CCNGG 9 cut(s) 721, 735, 1030, 1337, 1358, 1393, 2077, 2297, 2569
StyI CCWWGG 3 cut(s) 87, 935, 2195
TaaI ACNGT 5 cut(s) 892, 932, 1633, 1712, 2713
TaiI ACGT 2 cut(s) 580, 833
TaqI TCGA 4 cut(s) 156, 525, 2111, 2156
TaqII GACCGA 1 cut(s) 2694
TatI WGTACW 5 cut(s) 297, 353, 927, 1902, 2143
TauI GCSGC 2 cut(s) 481, 2783
Tru1I TTAA 7 cut(s) 221, 668, 696, 788, 984, 2387, 2804
Tru9I TTAA 7 cut(s) 221, 668, 696, 788, 984, 2387, 2804
TscAI CASTG 1 cut(s) 1551
TseFI GTSAC 1 cut(s) 1551
TseI GCWGC 7 cut(s) 401, 911, 1132, 1352, 2629, 2743, 2783
Tsp45I GTSAC 1 cut(s) 1551
TspRI CASTG 1 cut(s) 1551
Van91I CCANNNNNTGG 2 cut(s) 1196, 1676
VpaK11BI GGWCC 4 cut(s) 739, 1126, 2567, 2706
XagI CCTNNNNNAGG 1 cut(s) 1538
XapI RAATTY 5 cut(s) 96, 1915, 2158, 2184, 2227
XbaI TCTAGA 1 cut(s) 766
XceI RCATGY 2 cut(s) 554, 1001
XcmI CCANNNNNNNNNTGG 1 cut(s) 2305
XmiI GTMKAC 3 cut(s) 190, 525, 1507
XmnI GAANNNNTTC 5 cut(s) 594, 1522, 1964, 2086, 2409
XspI CTAG 5 cut(s) 363, 767, 1119, 1158, 2201
ZrmI AGTACT 2 cut(s) 1904, 2145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.