Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007625

Physical Location & Seq

Genomic Coordinates Forward (+)

23963803 .. 23965892

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g21270.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCAATTTCAGCCATATGTAACCTAACCACTCTTCTCTTCCTATCGATTGTGATCAATTGTGCTAATTCGTTGACTGAAATGGCTTCCACCTCCTCAGCTGTGAAGCGATCTGAAAATATTGCAGAAACCATGCCAGACGCACTCAGGGAGAGCCACTTTCATATGAAGAAATGTTTTGCCAGTTTTGTTGGAACGGGGAAAAGGCTAATAAAGCCCCAGCATATAATGGAGGAGCTGGAAAAATCGATAGAAGACAGGCATGAAAGAAGCAAGGTCTTGGAGGGTTTACTTGGTTACATCCTCAGTTGCACTCAGGAGGCAGCTGTTGTTCCACCGTATGTCGCTTTTGCGATGAGACCGAATCCCGGTTTCTCAGAATTTGTTAAGGTGAATGCAGACGATCGAGCAGTGGATTTCAGGCATTTCTGCTACCCAATACTTGAAGTTCAAAGAAATCGATCTTTGACGAAAGCTGGTACGGCGAACGATGAAAATGCTTTGGAAATAGACTTTGGAACCATCGATTTCTCTACTCCTCGAATGACGCTTCCTTCTTCGATCGGAAATGGACTCAACTTCGTCTTAAAGTTAATCTCATCAAGGCTCAGTACTCATGCCAGCTGCTCCGATTATGCTAAACCACTCCTTGACTACTTATTACCACTTAATTATCACGGAGAGAATCTTATGATCAATGAAAGTCTGGATACCGTTGAAAAACTTCAAACCGCATTGATCCGAGCAGAAGTACTCGTCTCCACACTTCCAAAAACCACACCATTCCCGAATTTTGAGCAAAGGTTTAAAGTGTTGGGTTTTGAGAAAGGATGGGGAGATACAGCAGAAAGAGTTGGGGAGACAATGAGGCTGCTGTCAGAAGTACTCCAAGCGCCAGACTCGGTGAAGTTGGGGTCGTTGTTTAGCAGACTTCCTAACACATTCAACATTGTTATCTTCTCTCCTCACGGCTACTTTGGCCAGTCGAATGTCCTTGGATTGCCCGACACGGGTGGCCAGGTGGTTTATATTCTTGATCAAGTGAGAGCCTTGGAGGAAGAGTTGCTCCTCAGAATAAAACAACAAGGCCTTGCTGTGAAACCTCAGATTCTTGTGGTGACACGACTTATACCAGAAGCTCGAGGAACAAAATGCAACCAGGAGTTGGAAGCTATCATCGACACTAAGCACTCCCACATCCTTAGGGTTCCATTCAGGACAGACAAAGGCGTTCTCCGCCAATGGGTTTCTCGTTTCGATATCTACCCTTATCTCGAGACATTTGCACAGGATGCAACTACAAAGATCTTACGACACATGGAATGCAAACCGATCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008194 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0030312 GO:0033036 GO:0033037 GO:0035251 GO:0044464 GO:0046527 GO:0051179 GO:0052545 GO:0071944 GO:0080165

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

447

Amino Acids

50.02

Weight (kDa)

6.62

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73370 AT1G73370 AT1G73370
fragaria_vesca	FvH4_5g18160
malus_domestica	MD06G1237200.v1.1 MD14G1244000.v1.1
prunus_persica	Prupe.5G241700_v2.0.a1
pyrus_communis	pycom06g21270 pycom06g21280 pycom13g14020 pycom14g20510 pycom14g20520
rosa_chinensis	RchiOBHm_Chr7g0177421
rosa_laevigata	RLG00000005538
rosa_multiflora	Rmu_co8123436.1_g000001 Rmu_co8463065.1_g000001 Rmu_sc0003114.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275880
rosa_rugosa	Rorug06G0405700
rosa_samantha	Rh7AG005400 Rh7BG005400 Rh7CG005500 Rh7DG005200
rosa_wichuraiana	Rw7G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1165
AciI	CCGC	2 cut(s)	732, 1237
AclWI	GGATC	1 cut(s)	733
AcoI	YGGCCR	2 cut(s)	979, 1015
AcsI	RAATTY	2 cut(s)	380, 790
AfaI	GTAC	4 cut(s)	481, 613, 753, 885
AfiI	CCNNNNNNNGG	4 cut(s)	368, 1010, 1165, 1243
AgsI	TTSAA	5 cut(s)	446, 452, 719, 728, 946
AjnI	CCWGG	2 cut(s)	1017, 1158
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	7 cut(s)	101, 238, 326, 476, 624, 1139, 1172
AluI	AGCT	7 cut(s)	101, 238, 326, 476, 624, 1139, 1172
Alw26I	GTCTC	4 cut(s)	352, 763, 854, 1271
AlwI	GGATC	1 cut(s)	733
Ama87I	CYCGRG	2 cut(s)	1140, 1274
AoxI	GGCC	3 cut(s)	979, 1015, 1087
ApeKI	GCWGC	3 cut(s)	323, 624, 871
ApoI	RAATTY	2 cut(s)	380, 790
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	895
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	3 cut(s)	403, 916, 1129
AvaI	CYCGRG	2 cut(s)	1140, 1274
AxyI	CCTNAGG	1 cut(s)	1202
BalI	TGGCCA	2 cut(s)	981, 1017
BbsI	GAAGAC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	335, 611, 858
BccI	CCATC	2 cut(s)	530, 825
BceAI	ACGGC	2 cut(s)	498, 985
BcgI	CGANNNNNNTGC	4 cut(s)	479, 513, 1265, 1299
BciT130I	CCWGG	2 cut(s)	1019, 1160
BciVI	GTATCC	1 cut(s)	703
BclI	TGATCA	3 cut(s)	54, 693, 1036
BcnI	CCSGG	1 cut(s)	369
BcoDI	GTCTC	4 cut(s)	352, 763, 854, 1271
BfoI	RGCGCY	1 cut(s)	896
BfuI	GTATCC	1 cut(s)	703
BglII	AGATCT	1 cut(s)	1305
BisI	GCNGC	3 cut(s)	324, 625, 872
BlsI	GCNGC	3 cut(s)	325, 626, 873
BmcAI	AGTACT	3 cut(s)	613, 753, 885
Bme1390I	CCNGG	3 cut(s)	369, 1019, 1160
BmeT110I	CYCGRG	2 cut(s)	1140, 1274
BmiI	GGNNCC	2 cut(s)	520, 1209
BmrFI	CCNGG	3 cut(s)	369, 1019, 1160
BmsI	GCATC	1 cut(s)	1282
BpiI	GAAGAC	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	369
Bsa29I	ATCGAT	4 cut(s)	47, 248, 460, 525
BsaBI	GATNNNNATC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	994, 1050
BsaXI	ACNNNNNCTCC	2 cut(s)	1046, 1076
Bsc4I	CCNNNNNNNGG	4 cut(s)	368, 1010, 1165, 1243
Bse1I	ACTGG	2 cut(s)	183, 982
Bse21I	CCTNAGG	1 cut(s)	1202
Bse8I	GATNNNNATC	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	1019, 1160
BseCI	ATCGAT	4 cut(s)	47, 248, 460, 525
BseDI	CCNNGG	2 cut(s)	994, 1050
BseGI	GGATG	4 cut(s)	300, 836, 1197, 1297
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	4 cut(s)	368, 1010, 1165, 1243
BseMII	CTCAG	8 cut(s)	111, 160, 319, 329, 390, 622, 1084, 1118
BseNI	ACTGG	2 cut(s)	183, 982
BseRI	GAGGAG	5 cut(s)	85, 248, 528, 954, 1058
BseXI	GCAGC	3 cut(s)	335, 611, 858
BseYI	CCCAGC	1 cut(s)	219
Bsh1285I	CGRYCG	2 cut(s)	406, 564
BshFI	GGCC	3 cut(s)	981, 1017, 1089
BshVI	ATCGAT	4 cut(s)	47, 248, 460, 525
BsiEI	CGRYCG	2 cut(s)	406, 564
BsiHKCI	CYCGRG	2 cut(s)	1140, 1274
BsiSI	CCGG	1 cut(s)	369
BslI	CCNNNNNNNGG	4 cut(s)	368, 1010, 1165, 1243
BsmAI	GTCTC	4 cut(s)	352, 763, 854, 1271
BsmBI	CGTCTC	1 cut(s)	763
BsmI	GAATGC	2 cut(s)	400, 1328
BsnI	GGCC	3 cut(s)	981, 1017, 1089
Bso31I	GGTCTC	1 cut(s)	352
BsoBI	CYCGRG	2 cut(s)	1140, 1274
BspACI	CCGC	2 cut(s)	732, 1237
BspANI	GGCC	3 cut(s)	981, 1017, 1089
BspCNI	CTCAG	8 cut(s)	110, 159, 318, 328, 389, 621, 1083, 1117
BspDI	ATCGAT	4 cut(s)	47, 248, 460, 525
BspLI	GGNNCC	2 cut(s)	520, 1209
BspPI	GGATC	1 cut(s)	733
BspTNI	GGTCTC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	183, 982
BssECI	CCNNGG	2 cut(s)	994, 1050
BssT1I	CCWWGG	2 cut(s)	994, 1050
Bst2UI	CCWGG	2 cut(s)	1019, 1160
Bst4CI	ACNGT	2 cut(s)	339, 715
Bst6I	CTCTTC	3 cut(s)	39, 44, 1053
BstAPI	GCANNNNNTGC	1 cut(s)	1292
BstC8I	GCNNGC	1 cut(s)	622
BstF5I	GGATG	4 cut(s)	300, 836, 1197, 1297
BstH2I	RGCGCY	1 cut(s)	896
BstHHI	GCGC	1 cut(s)	895
BstMAI	GTCTC	4 cut(s)	352, 763, 854, 1271
BstMCI	CGRYCG	2 cut(s)	406, 564
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 214, 482, 978, 1236, 1292
BstNI	CCWGG	2 cut(s)	1019, 1160
BstSCI	CCNGG	3 cut(s)	367, 1017, 1158
BstV1I	GCAGC	3 cut(s)	335, 611, 858
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	1305
BstYI	RGATCY	1 cut(s)	1305
Bsu15I	ATCGAT	4 cut(s)	47, 248, 460, 525
Bsu36I	CCTNAGG	1 cut(s)	1202
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	981, 1017, 1089
BsuTUI	ATCGAT	4 cut(s)	47, 248, 460, 525
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	4 cut(s)	300, 836, 1197, 1297
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	622
CfoI	GCGC	1 cut(s)	895
ClaI	ATCGAT	4 cut(s)	47, 248, 460, 525
CseI	GACGC	2 cut(s)	149, 556
Csp6I	GTAC	4 cut(s)	480, 612, 752, 884
CviAII	CATG	4 cut(s)	133, 263, 617, 1318
CviQI	GTAC	4 cut(s)	480, 612, 752, 884
DraI	TTTAAA	1 cut(s)	808
EaeI	YGGCCR	2 cut(s)	979, 1015
Eam1104I	CTCTTC	3 cut(s)	39, 44, 1053
EarI	CTCTTC	3 cut(s)	39, 44, 1053
EciI	GGCGGA	1 cut(s)	1226
Eco130I	CCWWGG	2 cut(s)	994, 1050
Eco147I	AGGCCT	1 cut(s)	1089
Eco31I	GGTCTC	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	1261
Eco81I	CCTNAGG	1 cut(s)	1202
Eco88I	CYCGRG	2 cut(s)	1140, 1274
EcoRII	CCWGG	2 cut(s)	1017, 1158
EcoRV	GATATC	1 cut(s)	1261
EcoT14I	CCWWGG	2 cut(s)	994, 1050
ErhI	CCWWGG	2 cut(s)	994, 1050
Esp3I	CGTCTC	1 cut(s)	763
FaeI	CATG	4 cut(s)	136, 266, 620, 1321
FatI	CATG	4 cut(s)	132, 262, 616, 1317
FauNDI	CATATG	2 cut(s)	17, 165
FbaI	TGATCA	3 cut(s)	54, 693, 1036
Fnu4HI	GCNGC	3 cut(s)	324, 625, 872
FokI	GGATG	4 cut(s)	287, 843, 1184, 1304
Fsp4HI	GCNGC	3 cut(s)	324, 625, 872
GlaI	GCGC	1 cut(s)	894
GluI	GCNGC	3 cut(s)	324, 625, 872
GsaI	CCCAGC	1 cut(s)	223
HaeII	RGCGCY	1 cut(s)	896
HaeIII	GGCC	3 cut(s)	981, 1017, 1089
HapII	CCGG	1 cut(s)	369
HgaI	GACGC	2 cut(s)	149, 556
HhaI	GCGC	1 cut(s)	895
Hin1II	CATG	4 cut(s)	136, 266, 620, 1321
Hin6I	GCGC	1 cut(s)	893
HinP1I	GCGC	1 cut(s)	893
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	5 cut(s)	364, 573, 685, 899, 1108
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	3 cut(s)	403, 916, 1129
Hpy166II	GTNNAC	2 cut(s)	75, 290
Hpy188I	TCNGA	8 cut(s)	115, 379, 566, 631, 743, 880, 1073, 1107
Hpy188III	TCNNGA	7 cut(s)	317, 707, 787, 1034, 1216, 1274, 1276
Hpy8I	GTNNAC	2 cut(s)	75, 290
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	2 cut(s)	339, 715
HpyCH4V	TGCA	7 cut(s)	125, 312, 398, 1155, 1286, 1295, 1326
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 214, 482, 978, 1236, 1292
Hsp92II	CATG	4 cut(s)	136, 266, 620, 1321
HspAI	GCGC	1 cut(s)	893
Ksp22I	TGATCA	3 cut(s)	54, 693, 1036
LmnI	GCTCC	3 cut(s)	235, 632, 1071
Lsp1109I	GCAGC	3 cut(s)	335, 611, 858
LweI	GCATC	1 cut(s)	1282
MaeIII	GTNAC	3 cut(s)	20, 296, 1117
MboII	GAAGA	7 cut(s)	26, 31, 181, 266, 549, 949, 1070
MfeI	CAATTG	1 cut(s)	58
MflI	RGATCY	1 cut(s)	1305
MlsI	TGGCCA	2 cut(s)	981, 1017
MluCI	AATT	6 cut(s)	6, 58, 67, 380, 670, 790
MluNI	TGGCCA	2 cut(s)	981, 1017
MlyI	GAGTC	2 cut(s)	567, 893
MmeI	TCCRAC	2 cut(s)	172, 1146
Mox20I	TGGCCA	2 cut(s)	981, 1017
MroXI	GAANNNNTTC	1 cut(s)	723
MscI	TGGCCA	2 cut(s)	981, 1017
MseI	TTAA	5 cut(s)	387, 587, 593, 669, 807
Msp20I	TGGCCA	2 cut(s)	981, 1017
MspA1I	CMGCKG	3 cut(s)	101, 326, 624
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	3 cut(s)	369, 1019, 1160
MunI	CAATTG	1 cut(s)	58
Mva1269I	GAATGC	2 cut(s)	400, 1328
MvaI	CCWGG	2 cut(s)	1019, 1160
MwoI	GCNNNNNNNGC	6 cut(s)	11, 214, 482, 978, 1236, 1292
NciI	CCSGG	1 cut(s)	369
NdeI	CATATG	2 cut(s)	17, 165
NlaIII	CATG	4 cut(s)	136, 266, 620, 1321
NlaIV	GGNNCC	2 cut(s)	520, 1209
NmuCI	GTSAC	1 cut(s)	1117
PaeR7I	CTCGAG	2 cut(s)	1140, 1274
PceI	AGGCCT	1 cut(s)	1089
PctI	GAATGC	2 cut(s)	400, 1328
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	3 cut(s)	364, 685, 1108
PflMI	CCANNNNNTGG	1 cut(s)	1165
PkrI	GCNGC	3 cut(s)	325, 626, 873
Ple19I	CGATCG	2 cut(s)	406, 564
PleI	GAGTC	2 cut(s)	567, 893
PpsI	GAGTC	2 cut(s)	567, 893
Psp6I	CCWGG	2 cut(s)	1017, 1158
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	2 cut(s)	1017, 1158
PspN4I	GGNNCC	2 cut(s)	520, 1209
PspXI	VCTCGAGB	1 cut(s)	1140
PsuI	RGATCY	1 cut(s)	1305
PvuI	CGATCG	2 cut(s)	406, 564
PvuII	CAGCTG	3 cut(s)	101, 326, 624
RsaI	GTAC	4 cut(s)	481, 613, 753, 885
RsaNI	GTAC	4 cut(s)	480, 612, 752, 884
SaqAI	TTAA	5 cut(s)	387, 587, 593, 669, 807
SatI	GCNGC	3 cut(s)	324, 625, 872
ScaI	AGTACT	3 cut(s)	613, 753, 885
SchI	GAGTC	2 cut(s)	567, 893
ScrFI	CCNGG	3 cut(s)	369, 1019, 1160
SfaNI	GCATC	1 cut(s)	1282
Sfr274I	CTCGAG	2 cut(s)	1140, 1274
SlaI	CTCGAG	2 cut(s)	1140, 1274
SmlI	CTYRAG	2 cut(s)	1140, 1274
SmoI	CTYRAG	2 cut(s)	1140, 1274
Sse9I	AATT	6 cut(s)	6, 58, 67, 380, 670, 790
SseBI	AGGCCT	1 cut(s)	1089
SsiI	CCGC	2 cut(s)	732, 1237
SspI	AATATT	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	1089
StyD4I	CCNGG	3 cut(s)	367, 1017, 1158
StyI	CCWWGG	2 cut(s)	994, 1050
TaaI	ACNGT	2 cut(s)	339, 715
TaqII	GACCGA	1 cut(s)	376
TasI	AATT	6 cut(s)	6, 58, 67, 380, 670, 790
TatI	WGTACW	3 cut(s)	611, 751, 883
TfiI	GAWTC	3 cut(s)	364, 685, 1108
Tru1I	TTAA	5 cut(s)	387, 587, 593, 669, 807
Tru9I	TTAA	5 cut(s)	387, 587, 593, 669, 807
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	1117
TseI	GCWGC	3 cut(s)	323, 624, 871
Tsp45I	GTSAC	1 cut(s)	1117
TspDTI	ATGAA	5 cut(s)	152, 182, 279, 507, 714
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	1 cut(s)	417
Van91I	CCANNNNNTGG	1 cut(s)	1165
XapI	RAATTY	2 cut(s)	380, 790
XhoI	CTCGAG	2 cut(s)	1140, 1274
XmnI	GAANNNNTTC	1 cut(s)	723
ZrmI	AGTACT	3 cut(s)	613, 753, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.