Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003114.1

Orthogroup ID

OG0007625

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2004

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003114.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1394 bp

atggcttccatcccggccttgaagcgctccgattcaattgcagacactatgccagatgctctgagacagagccgctatcacatgaagaaatgttttgccaggtttgtcgggaatgggaagaggttaatgaagccccagcatataatggaggaaatcgaaaaatcaataggggacgggaatgaaaaaagcaaggtgttacggggattacttggttacatcctcagttccactcaggaagcagctgttgttccgccgcatgttgcattttctgttagaccaaatcctggtttctcagagtttgttaaggtgaatgctgatgatctagcagtggatggaatcagtgttaccgaatacttgaaattcaaagaaatgatcgaaaatgctttggaaattgattttggagccattgacttctctagtcctcgcatgacccttccttcttctattgggaatggacttaacttcatcctcaagttaatctcctcgaggctgaatgccagctcatccgattatgccaaacccttgcttgactacttgttagcactcaatcaccacggacagaatcttatgatcaatgaaactatggattcggtggaaaagcttgaaacgtcattgattcgagcacaatcgtttgtctcagcactcccaaaaaacacaccatttcttaatttcgagcagaggttaaaggatatgggttttgagaaaggatggggggatacagcagaaagagttgttgagagaatgaggacactgtcagaagtactccaagcaccggattgcgtgaagttggagtcattctttagcagccttcccaatacattcaacattgtcatcttctctcctcacggctactttggccagtcagatgtccttggattgcctgatactggtggccaggtggtttatatacttgatcaagtgagagccttagaggaagagttgctgatgagaataaagcagcaagggcttgctgtgaagcctcagattcttgtggtgacgcgactcataccagactctcgagggactaagtgcaatgtggagttggaggctatagtcaacactaagcactcccacattctcagggttcctttcaggacagacaaaggcattctgcgccattgggtgtcccgttttgatatctacccttatcttgagacttttgtccaggatgcaactgcaaagattctagagcacatggactgcaaaccggacctcataattgggaactacagtgatggaaacttggtggcctctttgatggctgccaagcttggaataacacagggaacaattgcccacgctctagaaaagaccaagtatgaagactcggatgccaaatggaaggaatttgatacaaagtaccacttttcttgtcagttcactgcagacttaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008194 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0030312 GO:0033036 GO:0033037 GO:0035251 GO:0044464 GO:0046527 GO:0051179 GO:0052545 GO:0071944 GO:0080165

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

464

Amino Acids

52.03

Weight (kDa)

6.21

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73370 AT1G73370 AT1G73370
fragaria_vesca	FvH4_5g18160
malus_domestica	MD06G1237200.v1.1 MD14G1244000.v1.1
prunus_persica	Prupe.5G241700_v2.0.a1
pyrus_communis	pycom06g21270 pycom06g21280 pycom13g14020 pycom14g20510 pycom14g20520
rosa_chinensis	RchiOBHm_Chr7g0177421
rosa_laevigata	RLG00000005538
rosa_multiflora	Rmu_co8123436.1_g000001 Rmu_co8463065.1_g000001 Rmu_sc0003114.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275880
rosa_rugosa	Rorug06G0405700
rosa_samantha	Rh7AG005400 Rh7BG005400 Rh7CG005500 Rh7DG005200
rosa_wichuraiana	Rw7G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccII	CGCG	1 cut(s)	1000
AciI	CCGC	3 cut(s)	73, 251, 254
AcoI	YGGCCR	2 cut(s)	856, 892
AcsI	RAATTY	2 cut(s)	359, 1346
AfaI	GTAC	2 cut(s)	762, 1361
AfeI	AGCGCT	1 cut(s)	26
AfiI	CCNNNNNNNGG	3 cut(s)	284, 772, 887
AgsI	TTSAA	6 cut(s)	22, 36, 358, 364, 605, 823
AjnI	CCWGG	4 cut(s)	98, 283, 894, 1164
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	4 cut(s)	242, 501, 601, 1270
AluI	AGCT	4 cut(s)	242, 501, 601, 1270
Alw21I	GWGCWC	2 cut(s)	625, 1194
Alw26I	GTCTC	3 cut(s)	58, 640, 1148
Ama87I	CYCGRG	2 cut(s)	484, 1017
Aor51HI	AGCGCT	1 cut(s)	26
AoxI	GGCC	4 cut(s)	15, 856, 892, 1248
ApeKI	GCWGC	4 cut(s)	239, 804, 958, 1262
ApoI	RAATTY	2 cut(s)	359, 1346
AspLEI	GCGC	2 cut(s)	27, 1116
AspS9I	GGNCC	1 cut(s)	1210
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	319, 542, 1006
AvaI	CYCGRG	2 cut(s)	484, 1017
AvaII	GGWCC	1 cut(s)	1210
BalI	TGGCCA	2 cut(s)	858, 894
BbsI	GAAGAC	1 cut(s)	1329
Bbv12I	GWGCWC	2 cut(s)	625, 1194
BbvI	GCAGC	4 cut(s)	251, 816, 970, 1249
BccI	CCATC	5 cut(s)	17, 326, 702, 1229, 1252
BceAI	ACGGC	1 cut(s)	862
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	4 cut(s)	100, 285, 896, 1166
BciVI	GTATCC	1 cut(s)	709
BclI	TGATCA	2 cut(s)	570, 913
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	3 cut(s)	58, 640, 1148
BfaI	CTAG	4 cut(s)	323, 417, 1187, 1304
BfmI	CTRYAG	3 cut(s)	1050, 1228, 1383
BfoI	RGCGCY	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	709
BisI	GCNGC	6 cut(s)	73, 240, 254, 805, 959, 1263
BlsI	GCNGC	6 cut(s)	74, 241, 255, 806, 960, 1264
BmcAI	AGTACT	1 cut(s)	762
Bme1390I	CCNGG	5 cut(s)	14, 100, 285, 896, 1166
Bme18I	GGWCC	1 cut(s)	1210
BmeT110I	CYCGRG	2 cut(s)	484, 1017
BmgT120I	GGNCC	1 cut(s)	1210
BmiI	GGNNCC	2 cut(s)	403, 1086
BmrFI	CCNGG	5 cut(s)	14, 100, 285, 896, 1166
BmsI	GCATC	3 cut(s)	46, 1159, 1321
BoxI	GACNNNNGTC	1 cut(s)	1160
BpiI	GAAGAC	1 cut(s)	1329
BpuEI	CTTGAG	2 cut(s)	455, 1172
BpuMI	CCSGG	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	553, 871
BsaWI	WCCGGW	2 cut(s)	772, 1207
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 772, 887
Bse1I	ACTGG	2 cut(s)	859, 892
Bse3DI	GCAATG	1 cut(s)	1039
BseBI	CCWGG	4 cut(s)	100, 285, 896, 1166
BseDI	CCNNGG	2 cut(s)	553, 871
BseGI	GGATG	8 cut(s)	9, 216, 337, 465, 503, 713, 1174, 1336
BseLI	CCNNNNNNNGG	3 cut(s)	284, 772, 887
BseMI	GCAATG	1 cut(s)	1039
BseMII	CTCAG	7 cut(s)	53, 235, 245, 306, 651, 995, 1093
BseNI	ACTGG	2 cut(s)	859, 892
BseRI	GAGGAG	2 cut(s)	472, 831
BseXI	GCAGC	4 cut(s)	251, 816, 970, 1249
BseYI	CCCAGC	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	1000
BshFI	GGCC	4 cut(s)	17, 858, 894, 1250
BsiHKAI	GWGCWC	2 cut(s)	625, 1194
BsiHKCI	CYCGRG	2 cut(s)	484, 1017
BsiSI	CCGG	3 cut(s)	14, 773, 1208
BslFI	GGGAC	3 cut(s)	185, 1036, 1111
BslI	CCNNNNNNNGG	3 cut(s)	284, 772, 887
BsmAI	GTCTC	3 cut(s)	58, 640, 1148
BsmFI	GGGAC	3 cut(s)	185, 1036, 1111
BsmI	GAATGC	3 cut(s)	316, 499, 1107
BsnI	GGCC	4 cut(s)	17, 858, 894, 1250
BsoBI	CYCGRG	2 cut(s)	484, 1017
Bsp1286I	GDGCHC	2 cut(s)	625, 1194
Bsp143I	GATC	4 cut(s)	319, 372, 570, 913
BspACI	CCGC	3 cut(s)	73, 251, 254
BspANI	GGCC	4 cut(s)	17, 858, 894, 1250
BspCNI	CTCAG	7 cut(s)	54, 234, 244, 305, 650, 994, 1092
BspFNI	CGCG	1 cut(s)	1000
BspLI	GGNNCC	2 cut(s)	403, 1086
BspMAI	CTGCAG	1 cut(s)	1387
BsrDI	GCAATG	1 cut(s)	1039
BsrI	ACTGG	2 cut(s)	859, 892
BssECI	CCNNGG	2 cut(s)	553, 871
BssMI	GATC	4 cut(s)	319, 372, 570, 913
BssT1I	CCWWGG	1 cut(s)	871
Bst2UI	CCWGG	4 cut(s)	100, 285, 896, 1166
Bst4CI	ACNGT	2 cut(s)	753, 1232
Bst6I	CTCTTC	2 cut(s)	113, 930
BstC8I	GCNNGC	2 cut(s)	499, 969
BstDSI	CCRYGG	1 cut(s)	553
BstF5I	GGATG	8 cut(s)	9, 216, 337, 465, 503, 713, 1174, 1336
BstFNI	CGCG	1 cut(s)	1000
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	27, 1116
BstKTI	GATC	4 cut(s)	322, 375, 573, 916
BstMAI	GTCTC	3 cut(s)	58, 640, 1148
BstMBI	GATC	4 cut(s)	319, 372, 570, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	855, 964, 1113
BstNI	CCWGG	4 cut(s)	100, 285, 896, 1166
BstNSI	RCATGY	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	1160
BstSCI	CCNGG	5 cut(s)	12, 98, 283, 894, 1164
BstSFI	CTRYAG	3 cut(s)	1050, 1228, 1383
BstUI	CGCG	1 cut(s)	1000
BstV1I	GCAGC	4 cut(s)	251, 816, 970, 1249
BstV2I	GAAGAC	1 cut(s)	1329
BsuI	GTATCC	1 cut(s)	709
BsuRI	GGCC	4 cut(s)	17, 858, 894, 1250
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	8 cut(s)	9, 216, 337, 465, 503, 713, 1174, 1336
BtsI	GCAGTG	2 cut(s)	333, 1380
BtsIMutI	CAGTG	5 cut(s)	333, 346, 749, 1237, 1380
Cac8I	GCNNGC	2 cut(s)	499, 969
CfoI	GCGC	2 cut(s)	27, 1116
Cfr13I	GGNCC	1 cut(s)	1210
CseI	GACGC	1 cut(s)	1006
Csp6I	GTAC	2 cut(s)	761, 1360
CspCI	CAANNNNNGTGG	2 cut(s)	1352, 1387
CviAII	CATG	4 cut(s)	82, 257, 427, 1195
CviQI	GTAC	2 cut(s)	761, 1360
DpnI	GATC	4 cut(s)	321, 374, 572, 915
DpnII	GATC	4 cut(s)	319, 372, 570, 913
EaeI	YGGCCR	2 cut(s)	856, 892
Eam1104I	CTCTTC	2 cut(s)	113, 930
EarI	CTCTTC	2 cut(s)	113, 930
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	871
Eco32I	GATATC	1 cut(s)	1138
Eco47I	GGWCC	1 cut(s)	1210
Eco47III	AGCGCT	1 cut(s)	26
Eco88I	CYCGRG	2 cut(s)	484, 1017
EcoRII	CCWGG	4 cut(s)	98, 283, 894, 1164
EcoRV	GATATC	1 cut(s)	1138
EcoT14I	CCWWGG	1 cut(s)	871
ErhI	CCWWGG	1 cut(s)	871
FaeI	CATG	4 cut(s)	85, 260, 430, 1198
FalI	AAGNNNNNCTT	2 cut(s)	1349, 1381
FaqI	GGGAC	3 cut(s)	185, 1036, 1111
FatI	CATG	4 cut(s)	81, 256, 426, 1194
FbaI	TGATCA	2 cut(s)	570, 913
Fnu4HI	GCNGC	6 cut(s)	73, 240, 254, 805, 959, 1263
FokI	GGATG	7 cut(s)	203, 344, 452, 490, 720, 1181, 1343
Fsp4HI	GCNGC	6 cut(s)	73, 240, 254, 805, 959, 1263
FspBI	CTAG	4 cut(s)	323, 417, 1187, 1304
GlaI	GCGC	2 cut(s)	26, 1115
GluI	GCNGC	6 cut(s)	73, 240, 254, 805, 959, 1263
GsaI	CCCAGC	1 cut(s)	139
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	4 cut(s)	17, 858, 894, 1250
HapII	CCGG	3 cut(s)	14, 773, 1208
HgaI	GACGC	1 cut(s)	1006
HhaI	GCGC	2 cut(s)	27, 1116
Hin1II	CATG	4 cut(s)	85, 260, 430, 1198
Hin6I	GCGC	2 cut(s)	25, 1114
HinP1I	GCGC	2 cut(s)	25, 1114
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HindIII	AAGCTT	2 cut(s)	599, 1268
HpaII	CCGG	3 cut(s)	14, 773, 1208
HphI	GGTGA	3 cut(s)	319, 542, 1006
Hpy166II	GTNNAC	2 cut(s)	1057, 1380
Hpy188I	TCNGA	8 cut(s)	31, 63, 295, 508, 757, 865, 984, 1330
Hpy188III	TCNNGA	7 cut(s)	109, 233, 1017, 1093, 1151, 1187, 1304
Hpy8I	GTNNAC	2 cut(s)	1057, 1380
HpyAV	CCTTC	4 cut(s)	443, 447, 818, 1336
HpyCH4III	ACNGT	2 cut(s)	753, 1232
HpyCH4IV	ACGT	1 cut(s)	608
HpyCH4V	TGCA	7 cut(s)	41, 263, 1032, 1172, 1178, 1203, 1385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	855, 964, 1113
HpySE526I	ACGT	1 cut(s)	608
Hsp92II	CATG	4 cut(s)	85, 260, 430, 1198
HspAI	GCGC	2 cut(s)	25, 1114
Ksp22I	TGATCA	2 cut(s)	570, 913
Kzo9I	GATC	4 cut(s)	319, 372, 570, 913
LmnI	GCTCC	2 cut(s)	32, 401
Lsp1109I	GCAGC	4 cut(s)	251, 816, 970, 1249
LweI	GCATC	3 cut(s)	46, 1159, 1321
MaeI	CTAG	4 cut(s)	323, 417, 1187, 1304
MaeII	ACGT	1 cut(s)	608
MaeIII	GTNAC	4 cut(s)	195, 212, 343, 994
MalI	GATC	4 cut(s)	321, 374, 572, 915
MboI	GATC	4 cut(s)	319, 372, 570, 913
MboII	GAAGA	6 cut(s)	97, 130, 432, 826, 947, 1334
MfeI	CAATTG	2 cut(s)	36, 1290
MhlI	GDGCHC	2 cut(s)	625, 1194
MlsI	TGGCCA	2 cut(s)	858, 894
MluCI	AATT	7 cut(s)	36, 359, 390, 667, 1218, 1290, 1346
MluNI	TGGCCA	2 cut(s)	858, 894
MlyI	GAGTC	4 cut(s)	800, 996, 1007, 1319
MmeI	TCCRAC	2 cut(s)	768, 1023
Mox20I	TGGCCA	2 cut(s)	858, 894
MscI	TGGCCA	2 cut(s)	858, 894
MseI	TTAA	7 cut(s)	125, 303, 459, 476, 666, 683, 1391
Msp20I	TGGCCA	2 cut(s)	858, 894
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	3 cut(s)	14, 773, 1208
MspR9I	CCNGG	5 cut(s)	14, 100, 285, 896, 1166
MunI	CAATTG	2 cut(s)	36, 1290
Mva1269I	GAATGC	3 cut(s)	316, 499, 1107
MvaI	CCWGG	4 cut(s)	100, 285, 896, 1166
MvnI	CGCG	1 cut(s)	1000
MwoI	GCNNNNNNNGC	3 cut(s)	855, 964, 1113
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	4 cut(s)	319, 372, 570, 913
NlaIII	CATG	4 cut(s)	85, 260, 430, 1198
NlaIV	GGNNCC	2 cut(s)	403, 1086
NmuCI	GTSAC	1 cut(s)	994
NspI	RCATGY	1 cut(s)	260
PaeR7I	CTCGAG	2 cut(s)	484, 1017
PctI	GAATGC	3 cut(s)	316, 499, 1107
PfeI	GAWTC	7 cut(s)	32, 336, 562, 587, 616, 985, 1183
PflFI	GACNNNGTC	1 cut(s)	751
PflMI	CCANNNNNTGG	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	1164
PkrI	GCNGC	6 cut(s)	74, 241, 255, 806, 960, 1264
PleI	GAGTC	4 cut(s)	799, 996, 1007, 1319
PpsI	GAGTC	4 cut(s)	799, 996, 1007, 1319
PshAI	GACNNNNGTC	1 cut(s)	1160
Psp6I	CCWGG	4 cut(s)	98, 283, 894, 1164
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	4 cut(s)	98, 283, 894, 1164
PspN4I	GGNNCC	2 cut(s)	403, 1086
PspPI	GGNCC	1 cut(s)	1210
PspXI	VCTCGAGB	1 cut(s)	484
PstI	CTGCAG	1 cut(s)	1387
PsyI	GACNNNGTC	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	762, 1361
RsaNI	GTAC	2 cut(s)	761, 1360
SaqAI	TTAA	7 cut(s)	125, 303, 459, 476, 666, 683, 1391
SatI	GCNGC	6 cut(s)	73, 240, 254, 805, 959, 1263
Sau3AI	GATC	4 cut(s)	319, 372, 570, 913
Sau96I	GGNCC	1 cut(s)	1210
ScaI	AGTACT	1 cut(s)	762
SchI	GAGTC	4 cut(s)	800, 996, 1007, 1319
ScrFI	CCNGG	5 cut(s)	14, 100, 285, 896, 1166
SduI	GDGCHC	2 cut(s)	625, 1194
SfaNI	GCATC	3 cut(s)	46, 1159, 1321
SfcI	CTRYAG	3 cut(s)	1050, 1228, 1383
Sfr274I	CTCGAG	2 cut(s)	484, 1017
SinI	GGWCC	1 cut(s)	1210
SlaI	CTCGAG	2 cut(s)	484, 1017
SmlI	CTYRAG	4 cut(s)	470, 484, 1017, 1151
SmoI	CTYRAG	4 cut(s)	470, 484, 1017, 1151
Sse9I	AATT	7 cut(s)	36, 359, 390, 667, 1218, 1290, 1346
SsiI	CCGC	3 cut(s)	73, 251, 254
SspMI	CTAG	4 cut(s)	323, 417, 1187, 1304
StyD4I	CCNGG	5 cut(s)	12, 98, 283, 894, 1164
StyI	CCWWGG	1 cut(s)	871
TaaI	ACNGT	2 cut(s)	753, 1232
TaiI	ACGT	1 cut(s)	611
TaqI	TCGA	6 cut(s)	156, 375, 485, 619, 672, 1018
TasI	AATT	7 cut(s)	36, 359, 390, 667, 1218, 1290, 1346
TatI	WGTACW	1 cut(s)	760
TauI	GCSGC	2 cut(s)	75, 256
TfiI	GAWTC	7 cut(s)	32, 336, 562, 587, 616, 985, 1183
Tru1I	TTAA	7 cut(s)	125, 303, 459, 476, 666, 683, 1391
Tru9I	TTAA	7 cut(s)	125, 303, 459, 476, 666, 683, 1391
TscAI	CASTG	5 cut(s)	333, 346, 756, 1237, 1387
TseFI	GTSAC	1 cut(s)	994
TseI	GCWGC	4 cut(s)	239, 804, 958, 1262
Tsp45I	GTSAC	1 cut(s)	994
TspDTI	ATGAA	6 cut(s)	98, 143, 195, 454, 591, 1335
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	5 cut(s)	333, 346, 756, 1237, 1387
Tth111I	GACNNNGTC	1 cut(s)	751
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	1210
XapI	RAATTY	2 cut(s)	359, 1346
XbaI	TCTAGA	2 cut(s)	1186, 1303
XceI	RCATGY	1 cut(s)	260
XhoI	CTCGAG	2 cut(s)	484, 1017
XspI	CTAG	4 cut(s)	323, 417, 1187, 1304
ZrmI	AGTACT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.