Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8463065.1

Orthogroup ID

OG0007625

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1797

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8463065.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

aagtatgaagactcggatgccaaatggaaggaatttgatacaaagtaccacttttcttgtcagttcactgcagacttaatctcgatgaactcaactgattttgtcataactagcacatttcaagaaatagcaggaggtaaggatcgacctggacagtatgaaagccacaccgcatttacaatgccaggactgtgtcgagtagtctcaggcattgacgtgtttgatccgaagttcaacattgctgctcccggtgctgaccaatctgtctacttccccaactccgaaaaacagaagcgttttaccaaatttcatccttccattgaacaaatggtctacagtaaggaggaaaacgacgagcacataggatttttggcagacaaaaagaaaccaatcatcttttcaatggcaagactggataaagtgaagaacctctcaggactagttgagtggttcggaaagaacaagaggctgaggaatttggtcaaccttgttatagtaggggggttctttgacccatccaagtccaaagacagagaagaaattgctgaaattatcaaactgcatgccttggttaaagaatatcaacttaatggccagttcagatggatagcagctcaaactgataggtatcgcaacggagagttgtaccgctgcattgctgatacaaagggagcttttgtgcagcctgcattgtatgaagcctttggtcttacagtgattgaggcaatgaactgtggattaccctcttttgctacaaaccaaggaggcccggctgaaattattgttgatggagtctcgggcttccatattgatcccaacaatggtgaagagtccagcaacaagattgctgatttctttgagagatgcagggcagatggtgaatactggaagaagatctccgcggcgggtctgcagcgtatatatgcatgctatacatggaaaatatatgcaaacaaaatgttgaacatgggatccacttatgggttttggaggcagttgaggaaggagccgaagctagcaaagcaaagctacattcatatgttttacagtctcctatttaggactttggcaaggactgtccctgtcccaagtgatggatatgaaccagtaccgatgccaaaggcaatagctgcagctgaccaaggcaaaccaaagtcagtgacaactgtatccaaacccccacaagccgcagctgcaccaacaatgccaacagtttcagttgctcagatcacaccaacaccaagggatgaaggaggtttagagcagataaataagcaacctattggccctcctgatgttgcaagtccaaaccgcccaacacggtgcctttggaattgcttcttcgtcatcattggtttcctgtgccttgtttattacaagctcaagaatatgtactacaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008194 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0030312 GO:0033036 GO:0033037 GO:0035251 GO:0044464 GO:0046527 GO:0051179 GO:0052545 GO:0071944 GO:0080165

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

467

Amino Acids

52.73

Weight (kDa)

8.88

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73370 AT1G73370 AT1G73370
fragaria_vesca	FvH4_5g18160
malus_domestica	MD06G1237200.v1.1 MD14G1244000.v1.1
prunus_persica	Prupe.5G241700_v2.0.a1
pyrus_communis	pycom06g21270 pycom06g21280 pycom13g14020 pycom14g20510 pycom14g20520
rosa_chinensis	RchiOBHm_Chr7g0177421
rosa_laevigata	RLG00000005538
rosa_multiflora	Rmu_co8123436.1_g000001 Rmu_co8463065.1_g000001 Rmu_sc0003114.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275880
rosa_rugosa	Rorug06G0405700
rosa_samantha	Rh7AG005400 Rh7BG005400 Rh7CG005500 Rh7DG005200
rosa_wichuraiana	Rw7G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	1323
AccB7I	CCANNNNNTGG	1 cut(s)	1094
AccI	GTMKAC	2 cut(s)	267, 333
AccII	CGCG	1 cut(s)	902
AciI	CCGC	7 cut(s)	171, 649, 900, 902, 905, 1188, 1312
AclWI	GGATC	5 cut(s)	150, 218, 806, 966, 979
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	3 cut(s)	32, 305, 475
AfaI	GTAC	4 cut(s)	47, 647, 1110, 1394
AfiI	CCNNNNNNNGG	3 cut(s)	821, 981, 1094
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	5 cut(s)	122, 235, 323, 402, 964
AhlI	ACTAGT	1 cut(s)	439
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	148, 184
AjuI	GAANNNNNNNTTGG	2 cut(s)	382, 414
AloI	GAACNNNNNNTCC	2 cut(s)	956, 988
AluBI	AGCT	8 cut(s)	614, 674, 1015, 1029, 1130, 1136, 1193, 1381
AluI	AGCT	8 cut(s)	614, 674, 1015, 1029, 1130, 1136, 1193, 1381
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	3 cut(s)	208, 799, 1055
AlwI	GGATC	5 cut(s)	150, 218, 806, 966, 979
Ama87I	CYCGRG	1 cut(s)	796
AoxI	GGCC	3 cut(s)	592, 766, 1285
ApeKI	GCWGC	9 cut(s)	242, 611, 651, 682, 913, 1130, 1133, 1190, 1193
ApoI	RAATTY	3 cut(s)	32, 305, 475
Asp700I	GAANNNNTTC	1 cut(s)	1337
AspS9I	GGNCC	2 cut(s)	767, 1286
AsuC2I	CCSGG	2 cut(s)	249, 770
AsuHPI	GGTGA	2 cut(s)	836, 890
AsuNHI	GCTAGC	1 cut(s)	1015
AvaI	CYCGRG	1 cut(s)	796
BaeI	ACNNNNGTAYC	2 cut(s)	1152, 1185
BalI	TGGCCA	1 cut(s)	594
BamHI	GGATCC	1 cut(s)	971
BanI	GGYRCC	1 cut(s)	1323
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	470
BbvI	GCAGC	9 cut(s)	229, 623, 638, 694, 925, 1117, 1145, 1180, 1202
BccI	CCATC	5 cut(s)	523, 597, 782, 869, 1088
BciT130I	CCWGG	2 cut(s)	150, 186
BciVI	GTATCC	1 cut(s)	1180
BcnI	CCSGG	2 cut(s)	249, 770
BcoDI	GTCTC	3 cut(s)	208, 799, 1055
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	3 cut(s)	111, 440, 1016
BfmI	CTRYAG	4 cut(s)	69, 334, 911, 1131
BfuI	GTATCC	1 cut(s)	1180
BglII	AGATCT	1 cut(s)	894
Bme1390I	CCNGG	4 cut(s)	150, 186, 249, 770
BmeT110I	CYCGRG	1 cut(s)	796
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	767, 1286
BmiI	GGNNCC	3 cut(s)	973, 1008, 1325
BmrFI	CCNGG	4 cut(s)	150, 186, 249, 770
BmsI	GCATC	3 cut(s)	7, 854, 1104
BmtI	GCTAGC	1 cut(s)	1019
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	1367
BpuMI	CCSGG	2 cut(s)	249, 770
BsaBI	GATNNNNATC	1 cut(s)	627
BsaJI	CCNNGG	5 cut(s)	567, 760, 900, 1141, 1241
BsaXI	ACNNNNNCTCC	2 cut(s)	663, 693
Bsc4I	CCNNNNNNNGG	3 cut(s)	821, 981, 1094
Bse1I	ACTGG	4 cut(s)	417, 595, 890, 1106
Bse3DI	GCAATG	3 cut(s)	237, 654, 732
Bse8I	GATNNNNATC	1 cut(s)	627
BseBI	CCWGG	2 cut(s)	150, 186
BseDI	CCNNGG	5 cut(s)	567, 760, 900, 1141, 1241
BseGI	GGATG	4 cut(s)	22, 310, 515, 1252
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	3 cut(s)	821, 981, 1094
BseMI	GCAATG	3 cut(s)	237, 654, 732
BseMII	CTCAG	4 cut(s)	219, 447, 461, 1238
BseNI	ACTGG	4 cut(s)	417, 595, 890, 1106
BseXI	GCAGC	9 cut(s)	229, 623, 638, 694, 925, 1117, 1145, 1180, 1202
BsgI	GTGCAG	2 cut(s)	701, 1179
Bsh1236I	CGCG	1 cut(s)	902
BshFI	GGCC	3 cut(s)	594, 768, 1287
BshNI	GGYRCC	1 cut(s)	1323
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	796
BsiSI	CCGG	2 cut(s)	249, 770
BslFI	GGGAC	2 cut(s)	1064, 1070
BslI	CCNNNNNNNGG	3 cut(s)	821, 981, 1094
BsmAI	GTCTC	3 cut(s)	208, 799, 1055
BsmFI	GGGAC	2 cut(s)	1064, 1070
BsnI	GGCC	3 cut(s)	594, 768, 1287
BsoBI	CYCGRG	1 cut(s)	796
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	6 cut(s)	142, 223, 811, 894, 971, 1227
BspACI	CCGC	7 cut(s)	171, 649, 900, 902, 905, 1188, 1312
BspANI	GGCC	3 cut(s)	594, 768, 1287
BspCNI	CTCAG	4 cut(s)	218, 446, 462, 1237
BspFNI	CGCG	1 cut(s)	902
BspLI	GGNNCC	3 cut(s)	973, 1008, 1325
BspMAI	CTGCAG	3 cut(s)	73, 915, 1135
BspOI	GCTAGC	1 cut(s)	1019
BspPI	GGATC	5 cut(s)	150, 218, 806, 966, 979
BspT107I	GGYRCC	1 cut(s)	1323
BsrDI	GCAATG	3 cut(s)	237, 654, 732
BsrI	ACTGG	4 cut(s)	417, 595, 890, 1106
BssECI	CCNNGG	5 cut(s)	567, 760, 900, 1141, 1241
BssMI	GATC	6 cut(s)	142, 223, 811, 894, 971, 1227
BssT1I	CCWWGG	4 cut(s)	567, 760, 1141, 1241
Bst2UI	CCWGG	2 cut(s)	150, 186
Bst6I	CTCTTC	1 cut(s)	822
BstAPI	GCANNNNNTGC	1 cut(s)	1130
BstC8I	GCNNGC	4 cut(s)	564, 687, 928, 1017
BstDEI	CTNAG	4 cut(s)	205, 433, 470, 1224
BstDSI	CCRYGG	1 cut(s)	900
BstF5I	GGATG	4 cut(s)	22, 310, 515, 1252
BstFNI	CGCG	1 cut(s)	902
BstKTI	GATC	6 cut(s)	145, 226, 814, 897, 974, 1230
BstMAI	GTCTC	3 cut(s)	208, 799, 1055
BstMBI	GATC	6 cut(s)	142, 223, 811, 894, 971, 1227
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 1021, 1130, 1193
BstNI	CCWGG	2 cut(s)	150, 186
BstNSI	RCATGY	2 cut(s)	566, 930
BstSCI	CCNGG	4 cut(s)	148, 184, 247, 768
BstSFI	CTRYAG	4 cut(s)	69, 334, 911, 1131
BstUI	CGCG	1 cut(s)	902
BstV1I	GCAGC	9 cut(s)	229, 623, 638, 694, 925, 1117, 1145, 1180, 1202
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	2 cut(s)	894, 971
BstYI	RGATCY	2 cut(s)	894, 971
BsuI	GTATCC	1 cut(s)	1180
BsuRI	GGCC	3 cut(s)	594, 768, 1287
BtgI	CCRYGG	1 cut(s)	900
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	22, 310, 515, 1252
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	3 cut(s)	66, 720, 1164
Cac8I	GCNNGC	4 cut(s)	564, 687, 928, 1017
Cfr13I	GGNCC	2 cut(s)	767, 1286
Cfr42I	CCGCGG	1 cut(s)	903
Csp6I	GTAC	4 cut(s)	46, 646, 1109, 1393
CspCI	CAANNNNNGTGG	2 cut(s)	38, 73
CviAII	CATG	4 cut(s)	563, 927, 936, 967
CviQI	GTAC	4 cut(s)	46, 646, 1109, 1393
DdeI	CTNAG	4 cut(s)	205, 433, 470, 1224
DpnI	GATC	6 cut(s)	144, 225, 813, 896, 973, 1229
DpnII	GATC	6 cut(s)	142, 223, 811, 894, 971, 1227
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco130I	CCWWGG	4 cut(s)	567, 760, 1141, 1241
Eco88I	CYCGRG	1 cut(s)	796
EcoRII	CCWGG	2 cut(s)	148, 184
EcoT14I	CCWWGG	4 cut(s)	567, 760, 1141, 1241
EcoT22I	ATGCAT	1 cut(s)	928
ErhI	CCWWGG	4 cut(s)	567, 760, 1141, 1241
FaeI	CATG	4 cut(s)	566, 930, 939, 970
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	2 cut(s)	1064, 1070
FatI	CATG	4 cut(s)	562, 926, 935, 966
FauI	CCCGC	1 cut(s)	898
FauNDI	CATATG	1 cut(s)	1038
FblI	GTMKAC	2 cut(s)	267, 333
FokI	GGATG	4 cut(s)	29, 297, 502, 1259
FspBI	CTAG	3 cut(s)	111, 440, 1016
HaeIII	GGCC	3 cut(s)	594, 768, 1287
HapII	CCGG	2 cut(s)	249, 770
Hin1II	CATG	4 cut(s)	566, 930, 939, 970
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	3 cut(s)	11, 792, 830
HpaII	CCGG	2 cut(s)	249, 770
HphI	GGTGA	2 cut(s)	836, 890
Hpy166II	GTNNAC	4 cut(s)	66, 268, 334, 484
Hpy188I	TCNGA	6 cut(s)	16, 228, 283, 455, 602, 1227
Hpy188III	TCNNGA	5 cut(s)	82, 122, 435, 1292, 1384
Hpy8I	GTNNAC	4 cut(s)	66, 268, 334, 484
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	4 cut(s)	22, 324, 997, 1244
HpyCH4IV	ACGT	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 1021, 1130, 1193
HpyF3I	CTNAG	4 cut(s)	205, 433, 470, 1224
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	566, 930, 939, 970
KspI	CCGCGG	1 cut(s)	903
Kzo9I	GATC	6 cut(s)	142, 223, 811, 894, 971, 1227
LmnI	GCTCC	3 cut(s)	250, 671, 1006
Lsp1109I	GCAGC	9 cut(s)	229, 623, 638, 694, 925, 1117, 1145, 1180, 1202
LweI	GCATC	3 cut(s)	7, 854, 1104
MaeI	CTAG	3 cut(s)	111, 440, 1016
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	1159
MalI	GATC	6 cut(s)	144, 225, 813, 896, 973, 1229
MboI	GATC	6 cut(s)	142, 223, 811, 894, 971, 1227
MboII	GAAGA	7 cut(s)	20, 436, 548, 839, 901, 904, 1333
MflI	RGATCY	2 cut(s)	894, 971
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	594
MluCI	AATT	7 cut(s)	32, 305, 475, 540, 549, 777, 1333
MluNI	TGGCCA	1 cut(s)	594
MlyI	GAGTC	3 cut(s)	5, 801, 839
Mox20I	TGGCCA	1 cut(s)	594
Mph1103I	ATGCAT	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	1337
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	3 cut(s)	77, 573, 588
MslI	CAYNNNNRTG	2 cut(s)	215, 1037
Msp20I	TGGCCA	1 cut(s)	594
MspA1I	CMGCKG	4 cut(s)	651, 902, 1136, 1193
MspI	CCGG	2 cut(s)	249, 770
MspR9I	CCNGG	4 cut(s)	150, 186, 249, 770
MvaI	CCWGG	2 cut(s)	150, 186
MvnI	CGCG	1 cut(s)	902
MwoI	GCNNNNNNNGC	4 cut(s)	251, 1021, 1130, 1193
NciI	CCSGG	2 cut(s)	249, 770
NdeI	CATATG	1 cut(s)	1038
NdeII	GATC	6 cut(s)	142, 223, 811, 894, 971, 1227
NheI	GCTAGC	1 cut(s)	1015
NlaIII	CATG	4 cut(s)	566, 930, 939, 970
NlaIV	GGNNCC	3 cut(s)	973, 1008, 1325
NmuCI	GTSAC	1 cut(s)	1159
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	2 cut(s)	566, 930
PaeI	GCATGC	2 cut(s)	566, 930
PdmI	GAANNNNTTC	1 cut(s)	1337
PflFI	GACNNNGTC	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	1094
PleI	GAGTC	3 cut(s)	5, 800, 838
PpsI	GAGTC	3 cut(s)	5, 800, 838
Psp6I	CCWGG	2 cut(s)	148, 184
PspGI	CCWGG	2 cut(s)	148, 184
PspN4I	GGNNCC	3 cut(s)	973, 1008, 1325
PspPI	GGNCC	2 cut(s)	767, 1286
PstI	CTGCAG	3 cut(s)	73, 915, 1135
PsuI	RGATCY	2 cut(s)	894, 971
PsyI	GACNNNGTC	1 cut(s)	192
PvuII	CAGCTG	2 cut(s)	1136, 1193
RsaI	GTAC	4 cut(s)	47, 647, 1110, 1394
RsaNI	GTAC	4 cut(s)	46, 646, 1109, 1393
RseI	CAYNNNNRTG	2 cut(s)	215, 1037
SacII	CCGCGG	1 cut(s)	903
SaqAI	TTAA	3 cut(s)	77, 573, 588
Sau3AI	GATC	6 cut(s)	142, 223, 811, 894, 971, 1227
Sau96I	GGNCC	2 cut(s)	767, 1286
SchI	GAGTC	3 cut(s)	5, 801, 839
ScrFI	CCNGG	4 cut(s)	150, 186, 249, 770
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	3 cut(s)	7, 854, 1104
SfcI	CTRYAG	4 cut(s)	69, 334, 911, 1131
Sfr303I	CCGCGG	1 cut(s)	903
SgrBI	CCGCGG	1 cut(s)	903
SmiMI	CAYNNNNRTG	2 cut(s)	215, 1037
SmlI	CTYRAG	1 cut(s)	1382
SmoI	CTYRAG	1 cut(s)	1382
SpeI	ACTAGT	1 cut(s)	439
SphI	GCATGC	2 cut(s)	566, 930
Sse9I	AATT	7 cut(s)	32, 305, 475, 540, 549, 777, 1333
SsiI	CCGC	7 cut(s)	171, 649, 900, 902, 905, 1188, 1312
SspMI	CTAG	3 cut(s)	111, 440, 1016
StyD4I	CCNGG	4 cut(s)	148, 184, 247, 768
StyI	CCWWGG	4 cut(s)	567, 760, 1141, 1241
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	83, 145, 196
TasI	AATT	7 cut(s)	32, 305, 475, 540, 549, 777, 1333
TatI	WGTACW	1 cut(s)	1392
TauI	GCSGC	2 cut(s)	905, 1190
Tru1I	TTAA	3 cut(s)	77, 573, 588
Tru9I	TTAA	3 cut(s)	77, 573, 588
TscAI	CASTG	3 cut(s)	73, 720, 1164
TseFI	GTSAC	1 cut(s)	1159
TseI	GCWGC	9 cut(s)	242, 611, 651, 682, 913, 1130, 1133, 1190, 1193
Tsp45I	GTSAC	1 cut(s)	1159
TspDTI	ATGAA	9 cut(s)	21, 101, 174, 299, 711, 743, 1025, 1116, 1263
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	3 cut(s)	73, 720, 1164
Tth111I	GACNNNGTC	1 cut(s)	192
Van91I	CCANNNNNTGG	1 cut(s)	1094
XapI	RAATTY	3 cut(s)	32, 305, 475
XceI	RCATGY	2 cut(s)	566, 930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	2 cut(s)	267, 333
XmnI	GAANNNNTTC	1 cut(s)	1337
XspI	CTAG	3 cut(s)	111, 440, 1016
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.