Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8123436.1

Orthogroup ID

OG0007625

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 544

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8123436.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

gtggtttatatacttgatcaagtgagagccttagaggaagagttgctgatgagaataaagcagcaagggcttgctgtgaagcctcagattcttgtggtgacgcgactcataccagactctcgagggactaagtgcaatgtggagttggaggctatagtcaacactaagcactcccacattctcagggttcctttcaggacagacaaaggcattctgcgccattgggtgtcccgttttgatatctacccttatcttgagacttttgtccaggatgcaactgcaaagattctagagcacatggactgcaaaccggacctcataattgggaactacagtgatggaaacttggtggcctctttgatggctgccaagcttggaataacacaggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008194 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0030312 GO:0033036 GO:0033037 GO:0035251 GO:0044464 GO:0046527 GO:0051179 GO:0052545 GO:0071944 GO:0080165

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

7.96

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73370 AT1G73370 AT1G73370
fragaria_vesca	FvH4_5g18160
malus_domestica	MD06G1237200.v1.1 MD14G1244000.v1.1
prunus_persica	Prupe.5G241700_v2.0.a1
pyrus_communis	pycom06g21270 pycom06g21280 pycom13g14020 pycom14g20510 pycom14g20520
rosa_chinensis	RchiOBHm_Chr7g0177421
rosa_laevigata	RLG00000005538
rosa_multiflora	Rmu_co8123436.1_g000001 Rmu_co8463065.1_g000001 Rmu_sc0003114.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275880
rosa_rugosa	Rorug06G0405700
rosa_samantha	Rh7AG005400 Rh7BG005400 Rh7CG005500 Rh7DG005200
rosa_wichuraiana	Rw7G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	61, 365
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	73, 352
BccI	CCATC	2 cut(s)	332, 355
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	2 cut(s)	153, 331
BisI	GCNGC	2 cut(s)	62, 366
BlsI	GCNGC	2 cut(s)	63, 367
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	262
BoxI	GACNNNNGTC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	98, 196
BseXI	GCAGC	2 cut(s)	73, 352
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	139, 214
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	2 cut(s)	139, 214
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	2 cut(s)	97, 195
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	142
BssMI	GATC	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	5 cut(s)	31, 84, 129, 165, 182
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 216
BstNI	CCWGG	1 cut(s)	269
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	2 cut(s)	153, 331
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	73, 352
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	109
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	7 cut(s)	29, 70, 82, 152, 353, 365, 373
CviKI_1	RGCY	7 cut(s)	29, 70, 82, 152, 353, 365, 373
DdeI	CTNAG	5 cut(s)	31, 84, 129, 165, 182
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	241
FaeI	CATG	1 cut(s)	301
FaiI	YATR	6 cut(s)	9, 11, 110, 155, 299, 320
FaqI	GGGAC	2 cut(s)	139, 214
FatI	CATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	62, 366
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	62, 366
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	62, 366
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	4 cut(s)	88, 105, 116, 286
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	4 cut(s)	120, 196, 254, 290
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	4 cut(s)	135, 275, 281, 306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 216
HpyF3I	CTNAG	5 cut(s)	31, 84, 129, 165, 182
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	7 cut(s)	126, 169, 181, 254, 281, 324, 371
Lsp1109I	GCAGC	2 cut(s)	73, 352
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	99, 110
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	6 cut(s)	28, 93, 116, 142, 326, 364
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	67, 216
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	120
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	88, 286
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	63, 367
PleI	GAGTC	2 cut(s)	99, 110
PpsI	GAGTC	2 cut(s)	99, 110
PshAI	GACNNNNGTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	313
SatI	GCNGC	2 cut(s)	62, 366
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	2 cut(s)	99, 110
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	3 cut(s)	318, 375, 390
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	2 cut(s)	153, 331
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	313
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	120, 254
SmoI	CTYRAG	2 cut(s)	120, 254
Sse9I	AATT	1 cut(s)	321
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	1 cut(s)	121
TasI	AATT	1 cut(s)	321
TfiI	GAWTC	2 cut(s)	88, 286
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	2 cut(s)	61, 365
Tsp45I	GTSAC	1 cut(s)	97
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	313
XbaI	TCTAGA	1 cut(s)	289
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.