Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007625

Physical Location & Seq

Genomic Coordinates Forward (+)

10037307 .. 10039162

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14020.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAACAATGCAGATTTCATAATCACCAGTACATACCAAGAGATTGCTGGAAGCAAGAATAACGTTGGACAGTATGAGAGCCACACTGCCTTCACTCTTCCTGGGCTGTATCGAGTTGTTCACGGAATTGATGTTTTTGATCCCAAGTTTAATATCGTCTCCCCAGGAGCAGATATGTGTATATACTTTCCATGTTCTGACAAGGAAAAAAGGCTTACTGGTCTACATGGGTCAATTGAAGAACTCTTATATGGTGCTGAGCAGAACGACGAGCATATTGGGCTGTTGAGTGACAGATCAAAGCCTATTGTCTTTTCCATGGCAAGACGTGATAGAGTGAAAAATTTAACTGGACTTGTTGAGTGCTATGCTAAGAGCGCCAAGCTACGAGAAATGGTAAACCTTGTTGTGGTTGGTGGTTACTTGGATGTCAAGAACTCTAGGGATAGAGAAGAAATTGCAGAGGTTGAAAAAATGCATGACCTCATTAAGAAATACAACTTGAGTGGTCAGTTCCGATGGATAGCAGCACAGATGAACCGTGCTCGTAATGGTGAGCTCTACCGCTACATTGCAGACACAAGAGGTGTCTTTGTGCAGCCTGCTTTCTATGAAGCTTTTGGCCTCACCGTCGTGGAAGCCATGACCTGTGGCCTTCCTACTTTTGCAACTTGTCATGGTGGCCCTGCTGAGATCATTGAGCACGGTTCCTCTGGGTTCCATGTTGATCCGTATAACCCTGATCAAGTGGCTGAACTTCTGATTGACTTCTTTGATCAGTGCCAGAAGGATCCTGGCCACTGGGAAAAGATATCTCAAGCGGGACTTAAACGAATTTATGAAAGGTACACTTGGAAGATATATTCAGAGAGGCTGCTCACATTAGCTGGGGTTTATGGCTTCTGGAAGCATGTGTCTAAGCTTGAGAGGCGAGAGACAAGGCGATATCTGGAGATGTTTTACATTCTCAAGTACCGAAATCTGGTGAAGTCCATTCCGCTGGCCGTTGAAGAGCAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

341

Amino Acids

39.02

Weight (kDa)

6.61

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73370 AT1G73370 AT1G73370
fragaria_vesca	FvH4_5g18160
malus_domestica	MD06G1237200.v1.1 MD14G1244000.v1.1
prunus_persica	Prupe.5G241700_v2.0.a1
pyrus_communis	pycom06g21270 pycom06g21280 pycom13g14020 pycom14g20510 pycom14g20520
rosa_chinensis	RchiOBHm_Chr7g0177421
rosa_laevigata	RLG00000005538
rosa_multiflora	Rmu_co8123436.1_g000001 Rmu_co8463065.1_g000001 Rmu_sc0003114.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275880
rosa_rugosa	Rorug06G0405700
rosa_samantha	Rh7AG005400 Rh7BG005400 Rh7CG005500 Rh7DG005200
rosa_wichuraiana	Rw7G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	3 cut(s)	565, 821, 998
AclI	AACGTT	1 cut(s)	63
AclWI	GGATC	4 cut(s)	134, 722, 785, 798
AcoI	YGGCCR	2 cut(s)	796, 1002
AcsI	RAATTY	2 cut(s)	343, 834
AfaI	GTAC	3 cut(s)	31, 848, 974
AfiI	CCNNNNNNNGG	2 cut(s)	409, 982
AgsI	TTSAA	3 cut(s)	239, 470, 1010
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	3 cut(s)	100, 163, 793
AleI	CACNNNNGTG	1 cut(s)	632
AluBI	AGCT	5 cut(s)	385, 559, 617, 887, 922
AluI	AGCT	5 cut(s)	385, 559, 617, 887, 922
Alw21I	GWGCWC	3 cut(s)	547, 561, 705
Alw26I	GTCTC	2 cut(s)	163, 929
AlwI	GGATC	4 cut(s)	134, 722, 785, 798
AoxI	GGCC	5 cut(s)	622, 652, 682, 796, 1002
ApeKI	GCWGC	4 cut(s)	527, 598, 874, 1015
ApoI	RAATTY	2 cut(s)	343, 834
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	683
AsuHPI	GGTGA	4 cut(s)	16, 566, 619, 997
BalI	TGGCCA	1 cut(s)	798
BamHI	GGATCC	1 cut(s)	790
BanII	GRGCYC	1 cut(s)	561
Bbv12I	GWGCWC	3 cut(s)	547, 561, 705
BbvI	GCAGC	3 cut(s)	539, 610, 861
BccI	CCATC	1 cut(s)	513
BceAI	ACGGC	1 cut(s)	989
BciT130I	CCWGG	3 cut(s)	102, 165, 795
BclI	TGATCA	2 cut(s)	742, 775
BcoDI	GTCTC	2 cut(s)	163, 929
BfaI	CTAG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	381
BisI	GCNGC	4 cut(s)	528, 599, 875, 1016
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	4 cut(s)	529, 600, 876, 1017
Bme1390I	CCNGG	3 cut(s)	102, 165, 795
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	3 cut(s)	709, 719, 792
BmrFI	CCNGG	3 cut(s)	102, 165, 795
BmrI	ACTGGG	1 cut(s)	811
BmuI	ACTGGG	1 cut(s)	811
BpmI	CTGGAG	1 cut(s)	971
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	4 cut(s)	523, 801, 944, 953
BsaJI	CCNNGG	3 cut(s)	101, 163, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 982
Bse1I	ACTGG	4 cut(s)	27, 223, 355, 806
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	3 cut(s)	102, 165, 795
BseDI	CCNNGG	3 cut(s)	101, 163, 318
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	2 cut(s)	409, 982
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	249, 681
BseNI	ACTGG	4 cut(s)	27, 223, 355, 806
BseXI	GCAGC	3 cut(s)	539, 610, 861
BseYI	CCCAGC	1 cut(s)	887
BsgI	GTGCAG	1 cut(s)	617
BshFI	GGCC	5 cut(s)	624, 654, 684, 798, 1004
BsiHKAI	GWGCWC	3 cut(s)	547, 561, 705
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	2 cut(s)	409, 982
BsmAI	GTCTC	2 cut(s)	163, 929
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	837
BsnI	GGCC	5 cut(s)	624, 654, 684, 798, 1004
Bsp1286I	GDGCHC	3 cut(s)	547, 561, 705
Bsp143I	GATC	7 cut(s)	139, 296, 693, 727, 742, 775, 790
Bsp1720I	GCTNAGC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	3 cut(s)	565, 821, 998
BspANI	GGCC	5 cut(s)	624, 654, 684, 798, 1004
BspCNI	CTCAG	2 cut(s)	250, 682
BspLI	GGNNCC	3 cut(s)	709, 719, 792
BspPI	GGATC	4 cut(s)	134, 722, 785, 798
BspQI	GCTCTTC	1 cut(s)	1005
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	4 cut(s)	27, 223, 355, 806
BssECI	CCNNGG	3 cut(s)	101, 163, 318
BssMI	GATC	7 cut(s)	139, 296, 693, 727, 742, 775, 790
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	102, 165, 795
Bst4CI	ACNGT	4 cut(s)	72, 542, 631, 707
Bst6I	CTCTTC	2 cut(s)	102, 1005
BstC8I	GCNNGC	2 cut(s)	603, 1002
BstDEI	CTNAG	4 cut(s)	258, 372, 690, 918
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	433
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	7 cut(s)	142, 299, 696, 730, 745, 778, 793
BstMAI	GTCTC	2 cut(s)	163, 929
BstMBI	GATC	7 cut(s)	139, 296, 693, 727, 742, 775, 790
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 377, 928
BstNI	CCWGG	3 cut(s)	102, 165, 795
BstNSI	RCATGY	1 cut(s)	914
BstSCI	CCNGG	3 cut(s)	100, 163, 793
BstV1I	GCAGC	3 cut(s)	539, 610, 861
BstX2I	RGATCY	1 cut(s)	790
BstXI	CCANNNNNNTGG	1 cut(s)	1000
BstYI	RGATCY	1 cut(s)	790
BsuRI	GGCC	5 cut(s)	624, 654, 684, 798, 1004
BtgI	CCRYGG	1 cut(s)	318
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	3 cut(s)	84, 785, 799
Cac8I	GCNNGC	2 cut(s)	603, 1002
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	683
Csp6I	GTAC	3 cut(s)	30, 847, 973
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	8 cut(s)	192, 227, 319, 479, 643, 677, 722, 911
CviQI	GTAC	3 cut(s)	30, 847, 973
DdeI	CTNAG	4 cut(s)	258, 372, 690, 918
DpnI	GATC	7 cut(s)	141, 298, 695, 729, 744, 777, 792
DpnII	GATC	7 cut(s)	139, 296, 693, 727, 742, 775, 790
EaeI	YGGCCR	2 cut(s)	796, 1002
Eam1104I	CTCTTC	2 cut(s)	102, 1005
EarI	CTCTTC	2 cut(s)	102, 1005
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	561
Eco32I	GATATC	2 cut(s)	813, 947
Eco53kI	GAGCTC	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	559
EcoRII	CCWGG	3 cut(s)	100, 163, 793
EcoRV	GATATC	2 cut(s)	813, 947
EcoT14I	CCWWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	8 cut(s)	195, 230, 322, 482, 646, 680, 725, 914
FalI	AAGNNNNNCTT	4 cut(s)	810, 842, 835, 867
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	8 cut(s)	191, 226, 318, 478, 642, 676, 721, 910
FauI	CCCGC	1 cut(s)	814
FbaI	TGATCA	2 cut(s)	742, 775
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	4 cut(s)	528, 599, 875, 1016
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	4 cut(s)	528, 599, 875, 1016
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	4 cut(s)	528, 599, 875, 1016
GsaI	CCCAGC	1 cut(s)	891
GsuI	CTGGAG	1 cut(s)	971
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	5 cut(s)	624, 654, 684, 798, 1004
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	8 cut(s)	195, 230, 322, 482, 646, 680, 725, 914
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HindIII	AAGCTT	2 cut(s)	615, 920
HphI	GGTGA	4 cut(s)	16, 566, 619, 997
Hpy166II	GTNNAC	4 cut(s)	121, 224, 400, 849
Hpy188I	TCNGA	4 cut(s)	199, 518, 762, 868
Hpy188III	TCNNGA	3 cut(s)	433, 904, 950
Hpy8I	GTNNAC	4 cut(s)	121, 224, 400, 849
Hpy99I	CGWCG	2 cut(s)	272, 635
HpyAV	CCTTC	3 cut(s)	100, 665, 781
HpyCH4III	ACNGT	4 cut(s)	72, 542, 631, 707
HpyCH4IV	ACGT	2 cut(s)	63, 328
HpyCH4V	TGCA	6 cut(s)	11, 461, 478, 575, 598, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 377, 928
HpyF3I	CTNAG	4 cut(s)	258, 372, 690, 918
HpySE526I	ACGT	2 cut(s)	63, 328
Hsp92II	CATG	8 cut(s)	195, 230, 322, 482, 646, 680, 725, 914
HspAI	GCGC	1 cut(s)	378
Ksp22I	TGATCA	2 cut(s)	742, 775
Kzo9I	GATC	7 cut(s)	139, 296, 693, 727, 742, 775, 790
LguI	GCTCTTC	1 cut(s)	1005
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	3 cut(s)	539, 610, 861
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	63, 328
MaeIII	GTNAC	2 cut(s)	290, 419
MalI	GATC	7 cut(s)	141, 298, 695, 729, 744, 777, 792
MboI	GATC	7 cut(s)	139, 296, 693, 727, 742, 775, 790
MboII	GAAGA	5 cut(s)	89, 251, 464, 868, 1022
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	3 cut(s)	547, 561, 705
MlsI	TGGCCA	1 cut(s)	798
MluCI	AATT	5 cut(s)	126, 234, 343, 456, 834
MluNI	TGGCCA	1 cut(s)	798
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	7 cut(s)	457, 494, 578, 635, 721, 864, 921
Mox20I	TGGCCA	1 cut(s)	798
Mph1103I	ATGCAT	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	798
MseI	TTAA	4 cut(s)	150, 347, 489, 828
MslI	CAYNNNNRTG	1 cut(s)	632
Msp20I	TGGCCA	1 cut(s)	798
MspA1I	CMGCKG	1 cut(s)	1000
MspR9I	CCNGG	3 cut(s)	102, 165, 795
MunI	CAATTG	1 cut(s)	234
MvaI	CCWGG	3 cut(s)	102, 165, 795
MwoI	GCNNNNNNNGC	3 cut(s)	280, 377, 928
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	7 cut(s)	139, 296, 693, 727, 742, 775, 790
NlaIII	CATG	8 cut(s)	195, 230, 322, 482, 646, 680, 725, 914
NlaIV	GGNNCC	3 cut(s)	709, 719, 792
NmuCI	GTSAC	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	1 cut(s)	914
OliI	CACNNNNGTG	1 cut(s)	632
PciSI	GCTCTTC	1 cut(s)	1005
PkrI	GCNGC	4 cut(s)	529, 600, 876, 1017
Psp124BI	GAGCTC	1 cut(s)	561
Psp1406I	AACGTT	1 cut(s)	63
Psp6I	CCWGG	3 cut(s)	100, 163, 793
PspFI	CCCAGC	1 cut(s)	887
PspGI	CCWGG	3 cut(s)	100, 163, 793
PspN4I	GGNNCC	3 cut(s)	709, 719, 792
PspPI	GGNCC	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	790
RsaI	GTAC	3 cut(s)	31, 848, 974
RsaNI	GTAC	3 cut(s)	30, 847, 973
RseI	CAYNNNNRTG	1 cut(s)	632
SacI	GAGCTC	1 cut(s)	561
SapI	GCTCTTC	1 cut(s)	1005
SaqAI	TTAA	4 cut(s)	150, 347, 489, 828
SatI	GCNGC	4 cut(s)	528, 599, 875, 1016
Sau3AI	GATC	7 cut(s)	139, 296, 693, 727, 742, 775, 790
Sau96I	GGNCC	1 cut(s)	683
ScrFI	CCNGG	3 cut(s)	102, 165, 795
SduI	GDGCHC	3 cut(s)	547, 561, 705
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	4 cut(s)	502, 816, 923, 968
SmoI	CTYRAG	4 cut(s)	502, 816, 923, 968
Sse9I	AATT	5 cut(s)	126, 234, 343, 456, 834
SsiI	CCGC	3 cut(s)	565, 821, 998
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	3 cut(s)	100, 163, 793
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	4 cut(s)	72, 542, 631, 707
TaiI	ACGT	2 cut(s)	66, 331
TaqI	TCGA	1 cut(s)	112
TasI	AATT	5 cut(s)	126, 234, 343, 456, 834
TatI	WGTACW	1 cut(s)	29
Tru1I	TTAA	4 cut(s)	150, 347, 489, 828
Tru9I	TTAA	4 cut(s)	150, 347, 489, 828
TscAI	CASTG	3 cut(s)	91, 785, 806
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	4 cut(s)	527, 598, 874, 1015
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	5 cut(s)	7, 17, 551, 627, 855
TspGWI	ACGGA	2 cut(s)	138, 720
TspRI	CASTG	3 cut(s)	91, 785, 806
XapI	RAATTY	2 cut(s)	343, 834
XceI	RCATGY	1 cut(s)	914
XcmI	CCANNNNNNNNNTGG	2 cut(s)	44, 791
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.