Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007625

Physical Location & Seq

Genomic Coordinates Forward (+)

21560927 .. 21561408

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTTTTACAATCTCCTCTTTAGGAAATTGGCAAAGAATGTAGCTGTTCCAAGTGATGGATACGAACAACCGGCGCCAAGGGCTGTAACTGCAGCTGTCGACCAACCAACAACGGCGGTAGTATCCAAACCTCCGCAGCCGCCTGCAGCAGCAACCTCAGCAGTCCCTCAGCTGACACCAAGGGAGAGGGATGTAGGTAGGGAACTTGGTCAACCTCGAAGCCGCAGTAGAGCACGATGCCTATGGAATTGCTGCTGCGTCATCCTTGGTTTTCTCATCATTCTTTATTACAAGATTAGGAATATGTACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008194 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0030312 GO:0033036 GO:0033037 GO:0035251 GO:0044464 GO:0046527 GO:0051179 GO:0052545 GO:0071944 GO:0080165

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

105

Amino Acids

11.61

Weight (kDa)

9.8

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73370 AT1G73370 AT1G73370
fragaria_vesca	FvH4_5g18160
malus_domestica	MD06G1237200.v1.1 MD14G1244000.v1.1
prunus_persica	Prupe.5G241700_v2.0.a1
pyrus_communis	pycom06g21270 pycom06g21280 pycom13g14020 pycom14g20510 pycom14g20520
rosa_chinensis	RchiOBHm_Chr7g0177421
rosa_laevigata	RLG00000005538
rosa_multiflora	Rmu_co8123436.1_g000001 Rmu_co8463065.1_g000001 Rmu_sc0003114.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275880
rosa_rugosa	Rorug06G0405700
rosa_samantha	Rh7AG005400 Rh7BG005400 Rh7CG005500 Rh7DG005200
rosa_wichuraiana	Rw7G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	4 cut(s)	116, 134, 140, 223
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	56
AluBI	AGCT	3 cut(s)	44, 95, 172
AluI	AGCT	3 cut(s)	44, 95, 172
Alw21I	GWGCWC	1 cut(s)	235
ApeKI	GCWGC	6 cut(s)	92, 136, 146, 149, 252, 255
AspLEI	GCGC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	235
BbvCI	CCTCAGC	2 cut(s)	157, 168
BbvI	GCAGC	6 cut(s)	104, 148, 158, 161, 239, 242
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	129
BciVI	GTATCC	2 cut(s)	53, 133
BfmI	CTRYAG	2 cut(s)	90, 144
BfoI	RGCGCY	1 cut(s)	77
BfuI	GTATCC	2 cut(s)	53, 133
BisI	GCNGC	8 cut(s)	93, 137, 140, 147, 150, 223, 253, 256
BlsI	GCNGC	8 cut(s)	94, 138, 141, 148, 151, 224, 254, 257
BmiI	GGNNCC	1 cut(s)	75
BmsI	GCATC	1 cut(s)	227
Bpu10I	CCTNAGC	2 cut(s)	157, 168
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	77, 179, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	70
BseDI	CCNNGG	3 cut(s)	77, 179, 265
BseGI	GGATG	2 cut(s)	196, 261
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	171, 182
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	6 cut(s)	104, 148, 158, 161, 239, 242
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp1407I	TGTACA	1 cut(s)	306
BspACI	CCGC	4 cut(s)	116, 134, 140, 223
BspCNI	CTCAG	2 cut(s)	170, 181
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	2 cut(s)	94, 148
BspT107I	GGYRCC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	77, 179, 265
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	3 cut(s)	77, 179, 265
BstACI	GRCGYC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	157, 168
BstF5I	GGATG	2 cut(s)	196, 261
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 158
BstSFI	CTRYAG	2 cut(s)	90, 144
BstV1I	GCAGC	6 cut(s)	104, 148, 158, 161, 239, 242
BsuI	GTATCC	2 cut(s)	53, 133
BtsCI	GGATG	2 cut(s)	196, 261
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	70
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	307
CviJI	RGCY	6 cut(s)	44, 83, 95, 139, 172, 222
CviKI_1	RGCY	6 cut(s)	44, 83, 95, 139, 172, 222
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	157, 168
DinI	GGCGCC	1 cut(s)	75
Eco130I	CCWWGG	3 cut(s)	77, 179, 265
EcoT14I	CCWWGG	3 cut(s)	77, 179, 265
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
ErhI	CCWWGG	3 cut(s)	77, 179, 265
FaiI	YATR	2 cut(s)	244, 305
FaqI	GGGAC	1 cut(s)	149
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	8 cut(s)	93, 137, 140, 147, 150, 223, 253, 256
FokI	GGATG	2 cut(s)	203, 248
Fsp4HI	GCNGC	8 cut(s)	93, 137, 140, 147, 150, 223, 253, 256
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	8 cut(s)	93, 137, 140, 147, 150, 223, 253, 256
HaeII	RGCGCY	1 cut(s)	77
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	2 cut(s)	100, 212
HindII	GTYRAC	2 cut(s)	100, 212
HpaII	CCGG	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	100, 212
Hpy8I	GTNNAC	2 cut(s)	100, 212
HpyCH4V	TGCA	2 cut(s)	92, 146
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 158
HpyF3I	CTNAG	2 cut(s)	157, 168
Hsp92I	GRCGYC	1 cut(s)	74
HspAI	GCGC	1 cut(s)	74
KasI	GGCGCC	1 cut(s)	73
LpnPI	CCDG	2 cut(s)	84, 156
Lsp1109I	GCAGC	6 cut(s)	104, 148, 158, 161, 239, 242
LweI	GCATC	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	3 cut(s)	26, 247, 310
Mly113I	GGCGCC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	26, 141, 166, 177, 180, 225
MseI	TTAA	1 cut(s)	313
MspA1I	CMGCKG	2 cut(s)	95, 172
MspI	CCGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 158
NarI	GGCGCC	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	75
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	8 cut(s)	94, 138, 141, 148, 151, 224, 254, 257
PluTI	GGCGCC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	75
PstI	CTGCAG	2 cut(s)	94, 148
PvuII	CAGCTG	2 cut(s)	95, 172
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	313
SatI	GCNGC	8 cut(s)	93, 137, 140, 147, 150, 223, 253, 256
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	7 cut(s)	46, 97, 133, 158, 174, 199, 217
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	2 cut(s)	90, 144
SfoI	GGCGCC	1 cut(s)	75
Sse9I	AATT	3 cut(s)	26, 247, 310
SsiI	CCGC	4 cut(s)	116, 134, 140, 223
SspDI	GGCGCC	1 cut(s)	73
StyI	CCWWGG	3 cut(s)	77, 179, 265
TaqI	TCGA	2 cut(s)	99, 217
TasI	AATT	3 cut(s)	26, 247, 310
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	2 cut(s)	142, 225
Tru1I	TTAA	1 cut(s)	313
Tru9I	TTAA	1 cut(s)	313
TseI	GCWGC	6 cut(s)	92, 136, 146, 149, 252, 255
Van91I	CCANNNNNTGG	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.