Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Forward (+)

702851 .. 706398

Gene Structure 3548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCAAGTGCAAACTCAAATCTCTCTCTGAAAAGAAAGAAGACTGCAGTTTCTCTTACTTATCCTCCGAGCTGCCCATTTTTGCTTCACAGCGAAATGCGAAGGGAGTTTTGGCTTAAAAGTAAGATTGTTTATGTGAATCTCGGTTTGATAAGTGGTGCAAAAATGAATGAGAATGGACATATGGAAGTGCATTACCAAGACACCGGCTTTCCTTACACACCTACCGACGGCTTCATGGGTTTCTTTGACGGTTTTTCTCATGTACCGATGAATTATGGTCTCGCCATGCCAATGCATGATCAGGAAACTGCATACTGGTCAATGAACATGAGTTCGTACAAGGCTTTACCATCTGGTCCGGAGAGTAGTTCTTATTACGGTACTTATGAGGTAAATGATCATTTACCAAGCATGGACGTCAGCAGGGGGAGTTGGGAATACCCTTCAGTGATGAATGCAGAAGAGCCTGCAAACACCGACTCACAGCTAGAAGATGCTGCCATGGAAGCGCAAGCTACACCTGAGGAATGTATTCAGAATCAGCAAAATACAAGTACTTCTGAGGTTGCATGGCAAGAGGACATTGATCCTGATAACATGACCTATGAGGAATTACTTGACTTGGGTGAGGCAGTTGGCACTCAAAGCCGAGGTCTTTCCGACGAACTTATTAGCTTGCTTCCATTGTCAAAATACAAGTGTGGAAACTTCTTTTTAAGGAAAAAATCCGGAGAGAGGTGTGTGATTTGCCAGATGCAGTATAAAAGAGGGGATCGACCGATCACATTGCCATGCAAACATGTCTACCATAGCGAATGCATCAGCAAATGGCTCGGTATCAACAAGATATGCCCAGTTTGCAACCTCGAGGTTTTCGGTGAGGAGTCAAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

300

Amino Acids

33.82

Weight (kDa)

5.08

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	242 - 289	9e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	247 - 289	1.8e-14	Ring finger domain
zf-C3HC4_2	PF13923	247 - 288	3.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	247 - 289	7.1e-06	zinc-RING finger domain
zf-RING_11	PF17123	248 - 275	1.3e-07	RING-like zinc finger
zf-C3HC4	PF00097	248 - 288	4.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	248 - 286	5.6e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	423
AbsI	CCTCGAGG	1 cut(s)	869
AccI	GTMKAC	1 cut(s)	807
AccIII	TCCGGA	2 cut(s)	361, 731
AclWI	GGATC	2 cut(s)	584, 783
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	4 cut(s)	267, 341, 385, 559
AfiI	CCNNNNNNNGG	2 cut(s)	230, 738
AflIII	ACRYGT	1 cut(s)	802
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AluBI	AGCT	4 cut(s)	72, 490, 518, 678
AluI	AGCT	4 cut(s)	72, 490, 518, 678
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	2 cut(s)	584, 783
Ama87I	CYCGRG	1 cut(s)	869
Aor13HI	TCCGGA	2 cut(s)	361, 731
ApeKI	GCWGC	2 cut(s)	72, 500
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	641, 893
AvaI	CYCGRG	1 cut(s)	869
AvaII	GGWCC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	59, 487
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	4 cut(s)	772, 806, 817, 851
BclI	TGATCA	2 cut(s)	301, 400
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	73, 501
BlsI	GCNGC	2 cut(s)	74, 502
BmcAI	AGTACT	1 cut(s)	559
Bme18I	GGWCC	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	869
BmgT120I	GGNCC	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	851
BmsI	GCATC	3 cut(s)	487, 747, 831
BmuI	ACTGGG	1 cut(s)	851
BpiI	GAAGAC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	504, 652
BsaWI	WCCGGW	2 cut(s)	361, 731
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 738
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	323, 857
Bse21I	CCTNAGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	788
BseAI	TCCGGA	2 cut(s)	361, 731
BseDI	CCNNGG	2 cut(s)	504, 652
BseLI	CCNNNNNNNGG	2 cut(s)	230, 738
BseMI	GCAATG	1 cut(s)	788
BseMII	CTCAG	2 cut(s)	516, 555
BseNI	ACTGG	2 cut(s)	323, 857
BseRI	GAGGAG	1 cut(s)	899
BseXI	GCAGC	2 cut(s)	59, 487
Bsh1285I	CGRYCG	1 cut(s)	782
BsiEI	CGRYCG	1 cut(s)	782
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	3 cut(s)	207, 362, 732
BslI	CCNNNNNNNGG	2 cut(s)	230, 738
BsmAI	GTCTC	1 cut(s)	287
BsmI	GAATGC	2 cut(s)	463, 824
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	869
Bsp13I	TCCGGA	2 cut(s)	361, 731
Bsp143I	GATC	5 cut(s)	301, 400, 589, 775, 783
Bsp19I	CCATGG	1 cut(s)	504
BspCNI	CTCAG	2 cut(s)	517, 556
BspEI	TCCGGA	2 cut(s)	361, 731
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	2 cut(s)	584, 783
BspQI	GCTCTTC	1 cut(s)	459
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	788
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	323, 857
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	504, 652
BssMI	GATC	5 cut(s)	301, 400, 589, 775, 783
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	504
Bst4CI	ACNGT	2 cut(s)	254, 383
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	3 cut(s)	471, 516, 680
BstDEI	CTNAG	2 cut(s)	525, 564
BstDSI	CCRYGG	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	5 cut(s)	304, 403, 592, 778, 786
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	5 cut(s)	301, 400, 589, 775, 783
BstMCI	CGRYCG	1 cut(s)	782
BstMWI	GCNNNNNNNGC	3 cut(s)	509, 648, 861
BstNSI	RCATGY	1 cut(s)	806
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	59, 487
BstV2I	GAAGAC	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	525
BtgI	CCRYGG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	3 cut(s)	471, 516, 680
CfoI	GCGC	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	4 cut(s)	266, 340, 384, 558
CviQI	GTAC	4 cut(s)	266, 340, 384, 558
DdeI	CTNAG	2 cut(s)	525, 564
DpnI	GATC	5 cut(s)	303, 402, 591, 777, 785
DpnII	GATC	5 cut(s)	301, 400, 589, 775, 783
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	869
EcoT14I	CCWWGG	1 cut(s)	504
EcoT22I	ATGCAT	2 cut(s)	300, 824
ErhI	CCWWGG	1 cut(s)	504
FauNDI	CATATG	1 cut(s)	183
FbaI	TGATCA	2 cut(s)	301, 400
FblI	GTMKAC	1 cut(s)	807
Fnu4HI	GCNGC	2 cut(s)	73, 501
Fsp4HI	GCNGC	2 cut(s)	73, 501
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	2 cut(s)	73, 501
HapII	CCGG	3 cut(s)	207, 362, 732
HhaI	GCGC	1 cut(s)	514
Hin1I	GRCGYC	1 cut(s)	420
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HinfI	GANTC	4 cut(s)	139, 482, 541, 887
HpaII	CCGG	3 cut(s)	207, 362, 732
HphI	GGTGA	2 cut(s)	641, 893
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	5 cut(s)	30, 69, 540, 565, 664
Hpy188III	TCNNGA	4 cut(s)	305, 362, 593, 732
Hpy8I	GTNNAC	1 cut(s)	808
Hpy99I	CGWCG	2 cut(s)	233, 668
HpyAV	CCTTC	2 cut(s)	96, 456
HpyCH4III	ACNGT	2 cut(s)	254, 383
HpyCH4IV	ACGT	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	509, 648, 861
HpyF3I	CTNAG	2 cut(s)	525, 564
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	420
HspAI	GCGC	1 cut(s)	512
Kpn2I	TCCGGA	2 cut(s)	361, 731
Ksp22I	TGATCA	2 cut(s)	301, 400
Kzo9I	GATC	5 cut(s)	301, 400, 589, 775, 783
LguI	GCTCTTC	1 cut(s)	459
Lsp1109I	GCAGC	2 cut(s)	59, 487
LweI	GCATC	3 cut(s)	487, 747, 831
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	420
MalI	GATC	5 cut(s)	303, 402, 591, 777, 785
MboI	GATC	5 cut(s)	301, 400, 589, 775, 783
MboII	GAAGA	3 cut(s)	52, 476, 506
MluCI	AATT	2 cut(s)	274, 614
MlyI	GAGTC	2 cut(s)	476, 896
MmeI	TCCRAC	1 cut(s)	687
Mph1103I	ATGCAT	2 cut(s)	300, 824
MroI	TCCGGA	2 cut(s)	361, 731
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	2 cut(s)	117, 719
MslI	CAYNNNNRTG	2 cut(s)	293, 793
MspI	CCGG	3 cut(s)	207, 362, 732
Mva1269I	GAATGC	2 cut(s)	463, 824
MwoI	GCNNNNNNNGC	3 cut(s)	509, 648, 861
NcoI	CCATGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	5 cut(s)	301, 400, 589, 775, 783
NmeAIII	GCCGAG	1 cut(s)	677
NsiI	ATGCAT	2 cut(s)	300, 824
NspI	RCATGY	1 cut(s)	806
PaeR7I	CTCGAG	1 cut(s)	869
PciI	ACATGT	1 cut(s)	802
PciSI	GCTCTTC	1 cut(s)	459
PctI	GAATGC	2 cut(s)	463, 824
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	139, 541
PkrI	GCNGC	2 cut(s)	74, 502
PleI	GAGTC	2 cut(s)	476, 895
PpsI	GAGTC	2 cut(s)	476, 895
PscI	ACATGT	1 cut(s)	802
PspPI	GGNCC	1 cut(s)	359
PspXI	VCTCGAGB	1 cut(s)	869
PstI	CTGCAG	1 cut(s)	49
RsaI	GTAC	4 cut(s)	267, 341, 385, 559
RsaNI	GTAC	4 cut(s)	266, 340, 384, 558
RseI	CAYNNNNRTG	2 cut(s)	293, 793
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	117, 719
SatI	GCNGC	2 cut(s)	73, 501
Sau3AI	GATC	5 cut(s)	301, 400, 589, 775, 783
Sau96I	GGNCC	1 cut(s)	359
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	2 cut(s)	476, 896
SfaNI	GCATC	3 cut(s)	487, 747, 831
SfcI	CTRYAG	1 cut(s)	45
Sfr274I	CTCGAG	1 cut(s)	869
SinI	GGWCC	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	869
SmiMI	CAYNNNNRTG	2 cut(s)	293, 793
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
Sse9I	AATT	2 cut(s)	274, 614
SspMI	CTAG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	254, 383
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	2 cut(s)	778, 870
TaqII	GACCGA	1 cut(s)	796
TasI	AATT	2 cut(s)	274, 614
TatI	WGTACW	1 cut(s)	557
TfiI	GAWTC	2 cut(s)	139, 541
Tru1I	TTAA	2 cut(s)	117, 719
Tru9I	TTAA	2 cut(s)	117, 719
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	2 cut(s)	72, 500
TspDTI	ATGAA	5 cut(s)	182, 226, 287, 341, 470
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	359
XceI	RCATGY	1 cut(s)	806
XhoI	CTCGAG	1 cut(s)	869
XmiI	GTMKAC	1 cut(s)	807
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	1 cut(s)	491
ZraI	GACGTC	1 cut(s)	421
ZrmI	AGTACT	1 cut(s)	559
Zsp2I	ATGCAT	2 cut(s)	300, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.