Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Forward (+)

5504933 .. 5511360

Gene Structure 6428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGAAAGAGAGTGTTTTCCACCACTATATTTTGGAAACCCTATCTGGGCCTCCACTAGACGAGGACGAAAGGGAGCTTCCCAATCATCGTTTTCAGGCTTCGAGGTCGTTGCCCGCAAGGCTGAGAGACAAGTCTCATCCAGTTTCAAGGTCTTATAGGCGAGAAGGGTCGAGGAGGATTGACATGGACAGGCTTAGAAGGTTGAGCATGACGAGAAGAGCAACGGCGTGGAGCGTGAAGAGGCTTGTAAACTACGTTAAGTCTTCGGGGTTGTCCACGATTTCGAGAACTATAAATGATTTTGGAAATGCAGAGTCGGAGATTACAAGTGAATGGGAGGCCAGAAATAGTGGTCGAAGGATTTTCAAGAACGTTGCCAAGCCTGGTGCTAAATACATAGAAGAGGAAGATTTACTACGGTTCTTGAAGAGTGATGAAACTCACACCATATTTCCTCTCTTTGAAGGAGCAATTGAAACTGGAAAAATAACGAAGTCTTCCTTCAGAAATTGGGTGGTGTATGCCTATATTGAGCGCAAAGCATTGGCTCACTCCTTGAATGATACCAAGACTGCTGTCCAACAACTTCACAAGTTGGCGAGTGCAGTCGTAATTGTAATTATAACCGTGGTGAGCCTTTTGGTGATGGGTCTGGCCACTACTAAGGTGATCTTTGTTGTTACGTCTCAACTGCTGCTTGTGGGATTCATGTTCCAGAACATGTGCAAAACTATGTTCGAGTCCATCATCTTTGTGTTTGTGATGCACCCTTTCGATGTTGGTGATCGATGTGTGGTGGATGGCGTGCAGATGATTGTAGAAGAGATGAACATTTTATCAACCGTTTTCTTAAGATACGACAATGAGAAAATATACTACCCAAATTCTGTGCTTCTTACAAAACCAATTAGTAATTTCAGAAGGAGTCCAGATATGGCTGACACTGTTGATTTCACAATTGATGTCTCTACTCCAGTTGATGATGTTTCCGCACTCAAGAAGTCCATACAATCATACCTTGAGAGCAGGCCGAAGTATTGGAACCAAAAACACTCAATCCTAGTGAAGGAGATAGAGAATGTGGACAAGATGAAAATGACGCTGTGTGTTCAACACACCATGAACCATCAAAATTATGGGGAAAAGAGTGCTCGAAGATCAGAGCTTGTGTTCGAGTTAAAGAAAATTTTCCAAAACCTTGGCATAAAGTACCATCTTCTTCCTCAAGAAGTAAACATACCGCAATTCAACACAAGCAACGGGAGGTTAACCATGGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

428

Amino Acids

49.2

Weight (kDa)

9.37

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	250 - 308	4.7e-11	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AciI	CCGC	3 cut(s)	114, 990, 1241
AclI	AACGTT	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	2 cut(s)	883, 1185
AcuI	CTGAAG	1 cut(s)	487
AfaI	GTAC	1 cut(s)	1211
AfiI	CCNNNNNNNGG	2 cut(s)	45, 1066
AflII	CTTAAG	1 cut(s)	850
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	8 cut(s)	147, 367, 427, 464, 476, 559, 1112, 1249
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	76, 1165
AluI	AGCT	2 cut(s)	76, 1165
Alw21I	GWGCWC	1 cut(s)	1153
Alw26I	GTCTC	4 cut(s)	120, 138, 690, 970
AoxI	GGCC	4 cut(s)	47, 339, 654, 1028
ApeKI	GCWGC	1 cut(s)	694
ApoI	RAATTY	2 cut(s)	883, 1185
Asp700I	GAANNNNTTC	1 cut(s)	1187
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	4 cut(s)	643, 655, 679, 794
BalI	TGGCCA	1 cut(s)	656
BarI	GAAGNNNNNNTAC	4 cut(s)	399, 431, 1221, 1253
BbsI	GAAGAC	2 cut(s)	255, 489
Bbv12I	GWGCWC	1 cut(s)	1153
BbvI	GCAGC	1 cut(s)	681
BccI	CCATC	5 cut(s)	640, 752, 794, 1134, 1221
BceAI	ACGGC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	4 cut(s)	120, 138, 690, 970
BfaI	CTAG	2 cut(s)	56, 1061
BfrI	CTTAAG	1 cut(s)	850
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	695
BlsI	GCNGC	1 cut(s)	696
Bme1390I	CCNGG	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	1043
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	753
BoxI	GACNNNNGTC	1 cut(s)	575
BpiI	GAAGAC	2 cut(s)	255, 489
BpmI	CTGGAG	1 cut(s)	957
BpuEI	CTTGAG	3 cut(s)	980, 1040, 1209
Bsa29I	ATCGAT	1 cut(s)	787
BsaJI	CCNNGG	3 cut(s)	627, 1198, 1272
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 1066
Bse1I	ACTGG	3 cut(s)	140, 484, 974
BseBI	CCWGG	1 cut(s)	384
BseCI	ATCGAT	1 cut(s)	787
BseDI	CCNNGG	3 cut(s)	627, 1198, 1272
BseGI	GGATG	2 cut(s)	136, 805
BseLI	CCNNNNNNNGG	2 cut(s)	45, 1066
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	3 cut(s)	140, 484, 974
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	681
BsgI	GTGCAG	2 cut(s)	624, 827
BshFI	GGCC	4 cut(s)	49, 341, 656, 1030
BshVI	ATCGAT	1 cut(s)	787
BsiHKAI	GWGCWC	1 cut(s)	1153
BslI	CCNNNNNNNGG	2 cut(s)	45, 1066
BsmAI	GTCTC	4 cut(s)	120, 138, 690, 970
BsmBI	CGTCTC	1 cut(s)	690
BsnI	GGCC	4 cut(s)	49, 341, 656, 1030
Bsp1286I	GDGCHC	1 cut(s)	1153
Bsp143I	GATC	3 cut(s)	669, 784, 1157
Bsp19I	CCATGG	1 cut(s)	1272
BspACI	CCGC	3 cut(s)	114, 990, 1241
BspANI	GGCC	4 cut(s)	49, 341, 656, 1030
BspCNI	CTCAG	1 cut(s)	114
BspDI	ATCGAT	1 cut(s)	787
BspLI	GGNNCC	1 cut(s)	1043
BspQI	GCTCTTC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	850
BsrI	ACTGG	3 cut(s)	140, 484, 974
BssECI	CCNNGG	3 cut(s)	627, 1198, 1272
BssMI	GATC	3 cut(s)	669, 784, 1157
BssT1I	CCWWGG	2 cut(s)	1198, 1272
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	4 cut(s)	420, 628, 844, 946
Bst6I	CTCTTC	5 cut(s)	211, 233, 396, 422, 816
BstAFI	CTTAAG	1 cut(s)	850
BstC8I	GCNNGC	3 cut(s)	114, 806, 1028
BstDEI	CTNAG	3 cut(s)	122, 194, 663
BstDSI	CCRYGG	2 cut(s)	627, 1272
BstENI	CCTNNNNNAGG	1 cut(s)	1064
BstF5I	GGATG	2 cut(s)	136, 805
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	3 cut(s)	672, 787, 1160
BstMAI	GTCTC	4 cut(s)	120, 138, 690, 970
BstMBI	GATC	3 cut(s)	669, 784, 1157
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	724
BstPAI	GACNNNNGTC	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	681
BstV2I	GAAGAC	2 cut(s)	255, 489
BstXI	CCANNNNNNTGG	1 cut(s)	1199
Bsu15I	ATCGAT	1 cut(s)	787
BsuRI	GGCC	4 cut(s)	49, 341, 656, 1030
BsuTUI	ATCGAT	1 cut(s)	787
BtgI	CCRYGG	2 cut(s)	627, 1272
BtsCI	GGATG	2 cut(s)	136, 805
BtsIMutI	CAGTG	1 cut(s)	942
Cac8I	GCNNGC	3 cut(s)	114, 806, 1028
CfoI	GCGC	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	787
CseI	GACGC	1 cut(s)	1108
Csp6I	GTAC	1 cut(s)	1210
CviAII	CATG	6 cut(s)	184, 208, 709, 721, 1120, 1273
CviQI	GTAC	1 cut(s)	1210
DdeI	CTNAG	3 cut(s)	122, 194, 663
DpnI	GATC	3 cut(s)	671, 786, 1159
DpnII	GATC	3 cut(s)	669, 784, 1157
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	5 cut(s)	211, 233, 396, 422, 816
EarI	CTCTTC	5 cut(s)	211, 233, 396, 422, 816
Eco130I	CCWWGG	2 cut(s)	1198, 1272
Eco57I	CTGAAG	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	1064
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	1198, 1272
ErhI	CCWWGG	2 cut(s)	1198, 1272
Esp3I	CGTCTC	1 cut(s)	690
FaeI	CATG	6 cut(s)	187, 211, 712, 724, 1123, 1276
FalI	AAGNNNNNCTT	4 cut(s)	485, 517, 656, 688
FatI	CATG	6 cut(s)	183, 207, 708, 720, 1119, 1272
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	695
FokI	GGATG	2 cut(s)	123, 812
Fsp4HI	GCNGC	1 cut(s)	695
FspBI	CTAG	2 cut(s)	56, 1061
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	1 cut(s)	695
GsuI	CTGGAG	1 cut(s)	957
HaeIII	GGCC	4 cut(s)	49, 341, 656, 1030
HgaI	GACGC	1 cut(s)	1108
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	6 cut(s)	187, 211, 712, 724, 1123, 1276
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HincII	GTYRAC	1 cut(s)	1269
HindII	GTYRAC	1 cut(s)	1269
HinfI	GANTC	4 cut(s)	314, 705, 740, 925
HpaI	GTTAAC	1 cut(s)	1269
HphI	GGTGA	4 cut(s)	643, 655, 679, 794
Hpy166II	GTNNAC	5 cut(s)	250, 276, 1084, 1234, 1269
Hpy188I	TCNGA	4 cut(s)	319, 506, 920, 1162
Hpy188III	TCNNGA	7 cut(s)	285, 367, 424, 715, 929, 997, 1226
Hpy8I	GTNNAC	5 cut(s)	250, 276, 1084, 1234, 1269
HpyAV	CCTTC	7 cut(s)	158, 192, 351, 458, 511, 915, 1060
HpyCH4III	ACNGT	4 cut(s)	420, 628, 844, 946
HpyCH4IV	ACGT	3 cut(s)	255, 372, 683
HpyCH4V	TGCA	5 cut(s)	311, 605, 726, 766, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	3 cut(s)	122, 194, 663
HpySE526I	ACGT	3 cut(s)	255, 372, 683
Hsp92II	CATG	6 cut(s)	187, 211, 712, 724, 1123, 1276
HspAI	GCGC	1 cut(s)	535
KspAI	GTTAAC	1 cut(s)	1269
Kzo9I	GATC	3 cut(s)	669, 784, 1157
LguI	GCTCTTC	1 cut(s)	211
LmnI	GCTCC	3 cut(s)	73, 231, 467
Lsp1109I	GCAGC	1 cut(s)	681
LweI	GCATC	1 cut(s)	753
MaeI	CTAG	2 cut(s)	56, 1061
MaeII	ACGT	3 cut(s)	255, 372, 683
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	3 cut(s)	671, 786, 1159
MboI	GATC	3 cut(s)	669, 784, 1157
MfeI	CAATTG	2 cut(s)	471, 957
MhlI	GDGCHC	1 cut(s)	1153
MlsI	TGGCCA	1 cut(s)	656
MluNI	TGGCCA	1 cut(s)	656
MlyI	GAGTC	3 cut(s)	323, 749, 934
MmeI	TCCRAC	2 cut(s)	297, 604
Mox20I	TGGCCA	1 cut(s)	656
MroXI	GAANNNNTTC	1 cut(s)	1187
MscI	TGGCCA	1 cut(s)	656
MseI	TTAA	5 cut(s)	258, 851, 1178, 1268, 1282
MslI	CAYNNNNRTG	1 cut(s)	752
Msp20I	TGGCCA	1 cut(s)	656
MspCI	CTTAAG	1 cut(s)	850
MspR9I	CCNGG	1 cut(s)	384
MunI	CAATTG	2 cut(s)	471, 957
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	1272
NdeII	GATC	3 cut(s)	669, 784, 1157
NlaIII	CATG	6 cut(s)	187, 211, 712, 724, 1123, 1276
NlaIV	GGNNCC	1 cut(s)	1043
NspI	RCATGY	1 cut(s)	724
PciI	ACATGT	1 cut(s)	720
PciSI	GCTCTTC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	1187
PfeI	GAWTC	1 cut(s)	705
PkrI	GCNGC	1 cut(s)	696
PleI	GAGTC	3 cut(s)	322, 748, 933
PpsI	GAGTC	3 cut(s)	322, 748, 933
PscI	ACATGT	1 cut(s)	720
PshAI	GACNNNNGTC	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	623
Psp1406I	AACGTT	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	1043
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	1211
RsaNI	GTAC	1 cut(s)	1210
RseI	CAYNNNNRTG	1 cut(s)	752
SapI	GCTCTTC	1 cut(s)	211
SaqAI	TTAA	5 cut(s)	258, 851, 1178, 1268, 1282
SatI	GCNGC	1 cut(s)	695
Sau3AI	GATC	3 cut(s)	669, 784, 1157
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	3 cut(s)	323, 749, 934
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	1153
SfaNI	GCATC	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	4 cut(s)	850, 995, 1019, 1224
SmoI	CTYRAG	4 cut(s)	850, 995, 1019, 1224
SsiI	CCGC	3 cut(s)	114, 990, 1241
SspMI	CTAG	2 cut(s)	56, 1061
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	1198, 1272
TaaI	ACNGT	4 cut(s)	420, 628, 844, 946
TaiI	ACGT	3 cut(s)	258, 375, 686
TaqI	TCGA	9 cut(s)	101, 170, 284, 355, 738, 774, 787, 1153, 1173
TfiI	GAWTC	1 cut(s)	705
Tru1I	TTAA	5 cut(s)	258, 851, 1178, 1268, 1282
Tru9I	TTAA	5 cut(s)	258, 851, 1178, 1268, 1282
TscAI	CASTG	1 cut(s)	949
TseI	GCWGC	1 cut(s)	694
TspDTI	ATGAA	6 cut(s)	17, 450, 697, 842, 1106, 1136
TspRI	CASTG	1 cut(s)	949
Vha464I	CTTAAG	1 cut(s)	850
XagI	CCTNNNNNAGG	1 cut(s)	1064
XapI	RAATTY	2 cut(s)	883, 1185
XceI	RCATGY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1133
XmnI	GAANNNNTTC	1 cut(s)	1187
XspI	CTAG	2 cut(s)	56, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.