pycom07g15370

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0004169
Physical Location & Seq
Forward (+)
17666625 .. 17669507
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 957 bp
ATGAAGATAAACCTCTTCAGGCTCTGCTCCGGCCTCAAAGTCATCGGCTACTTCATGATCCTCCTCGTTGCTGCCATCATCTCCGTCTCCTACTATACCGTCGTCGTCGTCACTTGGGCACCCAAGCTGCTCCACGGCGGGGTGCACTCGTTTCTAGCTTTCTTCATCATCGTAATGTTCCATATTCTGCTTGTAATGTTACTGTGGAGTTACTTTATGGTAGTCTTTAAAGACCCTGGTTCTGTTCCGGAAAACTGGAAACCTCTAATAGACGAGGAAAATTTGGAGGCTGGTAGTTCTCTGACTTTGTCAGAAAATATCGAACCCAAGGTTTTCACTTCAACACAACCTTCAGATGGGGGAGAAAGACGACCACAACCTTCAGATGGAGTAGAAAGACGACCACAAGTACGGTATTGTAGTCGATGCCAAAATGGCAAGCCACCACGATGCCATCATTGCTCTGTCTGTCAAAGATGTGTACTTAAGATCGATCACCATTGTGTTTGGGTGGTGAATTGTGTTGGTGCACGCAACTACAAGTTTTTTCTTCTTTTCTTGCTTTATACATTTCTGGAGACGACGATGGATACCTTAGTTTTGCTGCCAAATTTTGTCGATTTTTTCTCTGACGCCAAGGATCATTCCGAATCTCCTGGCCATCTTGCAGTCATTTTTTTTACTTTTGTGCTTAATTTAGCCTTTGCACTGAGTCTTCTTTGTTTTGTGGTTATGCATGGGTCCCTTCTGTCTAGCAACACTACTACAGTTGAGGTTCATGAAAAGAAAGGAACAATCAGATGGAAGTATGACTTGGGCAGGAAGAAGAATTTTGAGCAGGTTTTTGGCACGAAGAAGGCACTGTGGCTCTTACCACTGTTCTCAAAAGAGGATTTAGACAACGTACCTGCTCTTCGGGGACTGGAATTTCCGACACTTTCAGATACTGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

319

Amino Acids

36.18

Weight (kDa)

8.01

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 138 - 262 4.2e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 829, 916
AccB1I GGYRCC 1 cut(s) 118
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 52, 648
AcoI YGGCCR 1 cut(s) 658
AcsI RAATTY 4 cut(s) 280, 610, 829, 926
AcuI CTGAAG 2 cut(s) 336, 366
AcyI GRCGYC 1 cut(s) 633
AfaI GTAC 3 cut(s) 411, 483, 906
AfiI CCNNNNNNNGG 3 cut(s) 139, 356, 386
AflII CTTAAG 1 cut(s) 485
AgsI TTSAA 1 cut(s) 342
AjnI CCWGG 2 cut(s) 235, 655
AjuI GAANNNNNNNTTGG 2 cut(s) 797, 829
AleI CACNNNNGTG 1 cut(s) 501
AluBI AGCT 2 cut(s) 127, 158
AluI AGCT 2 cut(s) 127, 158
Alw21I GWGCWC 2 cut(s) 147, 532
Alw26I GTCTC 2 cut(s) 91, 572
Alw44I GTGCAC 2 cut(s) 143, 528
AlwI GGATC 2 cut(s) 52, 648
AlwNI CAGNNNCTG 2 cut(s) 24, 947
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 2 cut(s) 31, 658
ApaLI GTGCAC 2 cut(s) 143, 528
ApeKI GCWGC 3 cut(s) 71, 127, 604
ApoI RAATTY 4 cut(s) 280, 610, 829, 926
AspS9I GGNCC 1 cut(s) 741
AsuHPI GGTGA 2 cut(s) 488, 526
AvaII GGWCC 1 cut(s) 741
BaeGI GKGCMC 3 cut(s) 121, 147, 532
BaeI ACNNNNGTAYC 2 cut(s) 582, 615
BalI TGGCCA 1 cut(s) 660
BanI GGYRCC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 897, 929
BbsI GAAGAC 1 cut(s) 707
Bbv12I GWGCWC 2 cut(s) 147, 532
BbvI GCAGC 3 cut(s) 58, 114, 591
BccI CCATC 7 cut(s) 83, 350, 380, 462, 580, 669, 795
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 2 cut(s) 237, 657
BciVI GTATCC 1 cut(s) 583
BcoDI GTCTC 2 cut(s) 91, 572
BfaI CTAG 2 cut(s) 155, 753
BfmI CTRYAG 1 cut(s) 765
BfrI CTTAAG 1 cut(s) 485
BfuAI ACCTGC 2 cut(s) 829, 916
BfuI GTATCC 1 cut(s) 583
BglI GCCNNNNNGGC 1 cut(s) 435
BisI GCNGC 3 cut(s) 72, 128, 605
BlsI GCNGC 3 cut(s) 73, 129, 606
Bme1390I CCNGG 2 cut(s) 237, 657
Bme18I GGWCC 1 cut(s) 741
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 3 cut(s) 120, 742, 743
BmrFI CCNGG 2 cut(s) 237, 657
BmsI GCATC 2 cut(s) 416, 440
BpiI GAAGAC 1 cut(s) 707
BpmI CTGGAG 1 cut(s) 596
Bsa29I ATCGAT 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 633
BsaJI CCNNGG 4 cut(s) 133, 235, 327, 636
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 356, 386
Bse1I ACTGG 2 cut(s) 260, 927
Bse3DI GCAATG 1 cut(s) 457
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 2 cut(s) 237, 657
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 4 cut(s) 133, 235, 327, 636
BseLI CCNNNNNNNGG 3 cut(s) 139, 356, 386
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 2 cut(s) 701, 939
BseNI ACTGG 2 cut(s) 260, 927
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 3 cut(s) 121, 147, 532
BseXI GCAGC 3 cut(s) 58, 114, 591
BshFI GGCC 2 cut(s) 33, 660
BshNI GGYRCC 1 cut(s) 118
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 2 cut(s) 147, 532
BsiSI CCGG 2 cut(s) 30, 248
BslFI GGGAC 2 cut(s) 727, 933
BslI CCNNNNNNNGG 3 cut(s) 139, 356, 386
BsmAI GTCTC 2 cut(s) 91, 572
BsmBI CGTCTC 2 cut(s) 91, 572
BsmFI GGGAC 2 cut(s) 727, 933
BsnI GGCC 2 cut(s) 33, 660
Bsp1286I GDGCHC 3 cut(s) 121, 147, 532
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 4 cut(s) 57, 489, 493, 640
BspACI CCGC 1 cut(s) 138
BspANI GGCC 2 cut(s) 33, 660
BspCNI CTCAG 2 cut(s) 702, 940
BspDI ATCGAT 1 cut(s) 492
BspEI TCCGGA 1 cut(s) 247
BspHI TCATGA 2 cut(s) 54, 778
BspLI GGNNCC 3 cut(s) 120, 742, 743
BspMI ACCTGC 2 cut(s) 829, 916
BspPI GGATC 2 cut(s) 52, 648
BspQI GCTCTTC 1 cut(s) 918
BspT107I GGYRCC 1 cut(s) 118
BspTI CTTAAG 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 457
BsrI ACTGG 2 cut(s) 260, 927
BssECI CCNNGG 4 cut(s) 133, 235, 327, 636
BssMI GATC 4 cut(s) 57, 489, 493, 640
BssNI GRCGYC 1 cut(s) 633
BssT1I CCWWGG 2 cut(s) 327, 636
Bst2UI CCWGG 2 cut(s) 237, 657
Bst4CI ACNGT 6 cut(s) 100, 204, 414, 769, 864, 879
Bst6I CTCTTC 2 cut(s) 20, 918
BstACI GRCGYC 1 cut(s) 633
BstAFI CTTAAG 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 440, 532
BstDEI CTNAG 3 cut(s) 595, 710, 948
BstDSI CCRYGG 1 cut(s) 133
BstKTI GATC 4 cut(s) 60, 492, 496, 643
BstMAI GTCTC 2 cut(s) 91, 572
BstMBI GATC 4 cut(s) 57, 489, 493, 640
BstMWI GCNNNNNNNGC 2 cut(s) 435, 459
BstNI CCWGG 2 cut(s) 237, 657
BstSCI CCNGG 2 cut(s) 235, 655
BstSFI CTRYAG 1 cut(s) 765
BstSLI GKGCMC 3 cut(s) 121, 147, 532
BstV1I GCAGC 3 cut(s) 58, 114, 591
BstV2I GAAGAC 1 cut(s) 707
Bsu15I ATCGAT 1 cut(s) 492
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 2 cut(s) 33, 660
BsuTUI ATCGAT 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 133
BtsIMutI CAGTG 3 cut(s) 707, 860, 875
BveI ACCTGC 2 cut(s) 829, 916
Cac8I GCNNGC 2 cut(s) 440, 532
CaiI CAGNNNCTG 2 cut(s) 24, 947
CciI TCATGA 2 cut(s) 54, 778
Cfr13I GGNCC 1 cut(s) 741
ClaI ATCGAT 1 cut(s) 492
CseI GACGC 1 cut(s) 641
Csp6I GTAC 3 cut(s) 410, 482, 905
CviAII CATG 3 cut(s) 55, 737, 779
CviQI GTAC 3 cut(s) 410, 482, 905
DdeI CTNAG 3 cut(s) 595, 710, 948
DpnI GATC 4 cut(s) 59, 491, 495, 642
DpnII GATC 4 cut(s) 57, 489, 493, 640
DraI TTTAAA 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 658
Eam1104I CTCTTC 2 cut(s) 20, 918
EarI CTCTTC 2 cut(s) 20, 918
Eco130I CCWWGG 2 cut(s) 327, 636
Eco47I GGWCC 1 cut(s) 741
Eco57I CTGAAG 2 cut(s) 336, 366
EcoO109I RGGNCCY 1 cut(s) 741
EcoRII CCWGG 2 cut(s) 235, 655
EcoT14I CCWWGG 2 cut(s) 327, 636
EcoT22I ATGCAT 1 cut(s) 738
ErhI CCWWGG 2 cut(s) 327, 636
Esp3I CGTCTC 2 cut(s) 91, 572
FaeI CATG 3 cut(s) 58, 740, 782
FaiI YATR 9 cut(s) 56, 96, 183, 218, 567, 734, 738, 780, 810
FalI AAGNNNNNCTT 2 cut(s) 797, 829
FaqI GGGAC 2 cut(s) 727, 933
FatI CATG 3 cut(s) 54, 736, 778
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 3 cut(s) 72, 128, 605
Fsp4HI GCNGC 3 cut(s) 72, 128, 605
FspBI CTAG 2 cut(s) 155, 753
GluI GCNGC 3 cut(s) 72, 128, 605
GsuI CTGGAG 1 cut(s) 596
HaeIII GGCC 2 cut(s) 33, 660
HapII CCGG 2 cut(s) 30, 248
HgaI GACGC 1 cut(s) 641
Hin1I GRCGYC 1 cut(s) 633
Hin1II CATG 3 cut(s) 58, 740, 782
HinfI GANTC 2 cut(s) 650, 712
HpaII CCGG 2 cut(s) 30, 248
HphI GGTGA 2 cut(s) 488, 526
Hpy166II GTNNAC 3 cut(s) 145, 482, 530
Hpy188I TCNGA 9 cut(s) 303, 313, 355, 385, 631, 649, 800, 933, 943
Hpy188III TCNNGA 4 cut(s) 55, 248, 575, 779
Hpy8I GTNNAC 3 cut(s) 145, 482, 530
Hpy99I CGWCG 4 cut(s) 104, 107, 110, 586
HpyAV CCTTC 4 cut(s) 360, 390, 755, 850
HpyCH4III ACNGT 6 cut(s) 100, 204, 414, 769, 864, 879
HpyCH4IV ACGT 1 cut(s) 903
HpyCH4V TGCA 5 cut(s) 145, 530, 668, 707, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 435, 459
HpyF3I CTNAG 3 cut(s) 595, 710, 948
HpySE526I ACGT 1 cut(s) 903
Hsp92I GRCGYC 1 cut(s) 633
Hsp92II CATG 3 cut(s) 58, 740, 782
KflI GGGWCCC 1 cut(s) 741
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 4 cut(s) 57, 489, 493, 640
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 2 cut(s) 32, 135
Lsp1109I GCAGC 3 cut(s) 58, 114, 591
LweI GCATC 2 cut(s) 416, 440
MaeI CTAG 2 cut(s) 155, 753
MaeII ACGT 1 cut(s) 903
MaeIII GTNAC 3 cut(s) 109, 198, 209
MalI GATC 4 cut(s) 59, 491, 495, 642
MboI GATC 4 cut(s) 57, 489, 493, 640
MboII GAAGA 9 cut(s) 7, 16, 154, 542, 707, 835, 838, 865, 905
MhlI GDGCHC 3 cut(s) 121, 147, 532
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 6 cut(s) 280, 517, 610, 694, 829, 926
MluNI TGGCCA 1 cut(s) 660
MlyI GAGTC 1 cut(s) 721
MmeI TCCRAC 1 cut(s) 956
Mox20I TGGCCA 1 cut(s) 660
Mph1103I ATGCAT 1 cut(s) 738
MroI TCCGGA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 660
MseI TTAA 3 cut(s) 228, 486, 693
MslI CAYNNNNRTG 3 cut(s) 173, 448, 501
Msp20I TGGCCA 1 cut(s) 660
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 2 cut(s) 30, 248
MspR9I CCNGG 2 cut(s) 237, 657
MvaI CCWGG 2 cut(s) 237, 657
MwoI GCNNNNNNNGC 2 cut(s) 435, 459
NdeII GATC 4 cut(s) 57, 489, 493, 640
NlaIII CATG 3 cut(s) 58, 740, 782
NlaIV GGNNCC 3 cut(s) 120, 742, 743
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 738
OliI CACNNNNGTG 1 cut(s) 501
PagI TCATGA 2 cut(s) 54, 778
PciSI GCTCTTC 1 cut(s) 918
PfeI GAWTC 1 cut(s) 650
PflFI GACNNNGTC 1 cut(s) 307
PkrI GCNGC 3 cut(s) 73, 129, 606
PleI GAGTC 1 cut(s) 720
PpsI GAGTC 1 cut(s) 720
PpuMI RGGWCCY 1 cut(s) 741
Psp5II RGGWCCY 1 cut(s) 741
Psp6I CCWGG 2 cut(s) 235, 655
PspGI CCWGG 2 cut(s) 235, 655
PspN4I GGNNCC 3 cut(s) 120, 742, 743
PspPI GGNCC 1 cut(s) 741
PspPPI RGGWCCY 1 cut(s) 741
PstNI CAGNNNCTG 2 cut(s) 24, 947
PsyI GACNNNGTC 1 cut(s) 307
RsaI GTAC 3 cut(s) 411, 483, 906
RsaNI GTAC 3 cut(s) 410, 482, 905
RseI CAYNNNNRTG 3 cut(s) 173, 448, 501
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 3 cut(s) 228, 486, 693
SatI GCNGC 3 cut(s) 72, 128, 605
Sau3AI GATC 4 cut(s) 57, 489, 493, 640
Sau96I GGNCC 1 cut(s) 741
SchI GAGTC 1 cut(s) 721
ScrFI CCNGG 2 cut(s) 237, 657
SduI GDGCHC 3 cut(s) 121, 147, 532
SfaNI GCATC 2 cut(s) 416, 440
SfcI CTRYAG 1 cut(s) 765
SinI GGWCC 1 cut(s) 741
SmiMI CAYNNNNRTG 3 cut(s) 173, 448, 501
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 6 cut(s) 280, 517, 610, 694, 829, 926
SsiI CCGC 1 cut(s) 138
SspMI CTAG 2 cut(s) 155, 753
StyD4I CCNGG 2 cut(s) 235, 655
StyI CCWWGG 2 cut(s) 327, 636
TaaI ACNGT 6 cut(s) 100, 204, 414, 769, 864, 879
TaiI ACGT 1 cut(s) 906
TaqI TCGA 4 cut(s) 321, 424, 492, 618
TasI AATT 6 cut(s) 280, 517, 610, 694, 829, 926
TatI WGTACW 1 cut(s) 481
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 3 cut(s) 228, 486, 693
Tru9I TTAA 3 cut(s) 228, 486, 693
TscAI CASTG 3 cut(s) 714, 867, 882
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 3 cut(s) 71, 127, 604
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 5 cut(s) 17, 43, 154, 767, 795
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 3 cut(s) 714, 867, 882
Tth111I GACNNNGTC 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 485
VneI GTGCAC 2 cut(s) 143, 528
VpaK11BI GGWCC 1 cut(s) 741
XapI RAATTY 4 cut(s) 280, 610, 829, 926
XspI CTAG 2 cut(s) 155, 753
Zsp2I ATGCAT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.