Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011932

Physical Location & Seq

Genomic Coordinates Forward (+)

20745610 .. 20748882

Gene Structure 3273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3099 bp

ATGCCGGTTCTGAGCAGCCCAAGAGCTTCCTGGCTTCGATTTCCCAAAACCCTAACCCCCAATTGCAGATACCAATTAGGGTCTGATTCAGAAAGTGAAAACCTTGAGGAGTGTGGTGAGAGAGATGATAAATTTGGGCCTATTGGGTCTGAATCAAATATGGGTCTCTCATTATTCTGTGGGCGCCAGCAAGCTGAAGCTGTTCCTCCAACTTCTACCAGTTTTCTTACCATGATCGTGAAACATGGAGTTCGAACCAGGCCATACCATGCACTCGCACCAGCGGCTTCCGAAATTCCTTCCTTGCCATCGACCACCAACAAGAATTACCGGCAGCACCACAGCCTCCTTCCTCAATGCAAAAGCTTGAAGTCTCTGCGGCAAATCCACGCCCACCTGATAGTCTCAGGCTTCCAGCAAGACCATTCGACACTGACCCATCTCATAAATTCCTACTCTTTGTTCAAAAAATGCGGTTCTGCGCTCTCAGTTTTTTGTTCTGCGCAAAACCCAAGTGTGATTTTGTGGAACTCCATGATTCGAGCTTATACGAGAGCAAAACAGTACAGGGAAGCTCGAAAAATGTACAATTCGATGGGGGAACAAGGCGTAGAGCCGGATAAGTATACCTTCAACTTTGTTTTGAAAGCTTGTACTTCTGCTTTGGATTTCGAAGATGGTGTCTTGGTGCACCGTGAAGTTGCTCGGAAGCGGCTGGACTCTGATGTGTTTATAGGGACCAGTCTCATTGACATGTACTGTAAAATGGGTGACTTAGAGAGTGCGGGAGAGGTGTTTAATAGATTGCCTAAGAGAGATGTTGTAGCTTGTAATGCTTTGATTGCGGGTTTATCGCAAAGTGAGGATCCTTGTGAGGCATTGGGGTTTTTCCGGAAGATGCAGACATGGGGGCTGAGGCCGAACTTGGTGAGCTTGGTCAATTTGGTTCCAGCAGTGTCTCGGTTGGCAGATATTGATACTTGTAGGTGTATTCATGGTTATCTGTTGAGGAGGGATTTTAGTTCGGTGGTTTCTAATGGTTTGATTGATATGTACTCCAAGTGTGGAGATGTAGATGCTGCTCACCGGGTTTTTGACATGATGCAGGACCGGGATGATGTTTCGTGGGGAACAATGATGGCAGGGTATGCGAGTAATGGATGTTTTGTTGAGGTTTTGGAGTTATTTGATTGGATTAAAGGAGAGAATACTACGATGAATAAGGTTTCAATCATAAGTGCTCTTTTGGCTGCTACGGAGATGAGAGATTTAGAGAAAGGGAAGGTGATCCATTTTTGTGCCTCACAACAAGACCTCGATGCTGATGTTTCGGTTGCTACTTCTATAATGACCATGTATGCAAAATGCGGAGAGATAGAGAAGGCTAAACAAATTTTTGAGGGACTAGGGAAAAGAGATTCAGTTTCTTGGGCTGCACTTTTATCTGCTTGCGTCCAATCTGGTTATCCTGGCGCAGCATTGTCTCTCTTTCGAGATGAGCAGAATGAAATTTTGAAACCAGGTGGAATAACACTGATAAGCGTCCTCTTGGCATGTGCAGAATTATCGTATCTGAAGTTAGGTATGAGCATACATTGCTATGCTCTCAAGGCAAACATTGCTTCCGATATTTCTTTTGGAACAGCCCTAGTCTCCATGTATGCCAGATGTGGAAATTTTACTTCTGCATTAACTCTATTCAATAGAATGCCATGCAAAGATGTTGTGACATGGAATGCTTTGATAAATGCATACACCCAAATTGGTGACGCCTGCCATGCTATAGATATGTTTCGTGAATTATGGTTGTCTGGAATAATGCCTGATGCAGGAACCCTGGTGGGCATTATCTCCGCTTGTAGCATACTGAGTGACCTAGATCAAGGTACCTGTATTCATGGACAAATTATAAAGAATGGGTGTGAGCATGATGTTGCTGTCAAAAATGCTCTTATTAGCATCTATTGCAAATGCAGTAACATATGCTCAGCTGAACTTCTGTTTAACAGAACCATATTTACGAAGGATGTGGTATCATGGAATGCAATGATGTCCGGATACGTGCAGGCTGGATATGCCAGGGAAGCTATATCTGCTTTTCACCAGATGAAATTGGAGAACGTTCGGCCTAATTTAGTCACATTTGTTTGTATCCTTCCTGCAGTGGCATATCTGGCAGCCCCAAGAGAGGGAATGGCTTTTCATTCTTGCATTATCCAAATGGGGTTTCTGTCCAACACACTTGTGGGAAATAGTCTTATTGATATGTATGCTAAATGCGGACAGCTCAATTATTCAGAGAAATGCTTTAATGAGATGGAGCACAAGGACAAAGTTTCATGGAATGCAATGCTTGCAGCATATGCAGTGCACGGGCAAGGAGTTGATGCAGTTGCACTTTTCTCACTGATGCAAGAGAGTTCTGTCCAAGTTGATTCTGTGTCATTCATCAGTGTTCTGTCCGCTTGCAGACATGCCGGTCTGGTACAAGAAGGAAGGAGTATTTTCCAGGTCATGCATGAAAAGCATCATCTTGAACCAGAGTTGGAACATTATGCGTGCATGGTAGATCTTTTAGGTCGTGCTGGTTTATTCGATGAAGCTTTAAACTTAATTAATAAAATGCCAATGGAGCCGGATGCTGGAGTCTGGGGAGCGTTATTAGGTGCGTGTAGGGTGCATTCTAATGTGGAGTTAGGAGAAATTGCATTGGGTCATCTTGTTAAGCTTGAGCCTAGGAATGCAGCAAATTACATAGTTTTATCTGATATACATGCTCATTCTGCTAGATGGGGTGATTCTGGCAAGACAAGATCAATGATGAGTGACTCGGGGTTAAAGAGAACACCGGGATGTAGTTGGGTAGAGGTTGAAAACAGGCTGAGAACATGCAGTCTCTTGGAAGAACTCTCTGTGCTGATGTGCATTGCCATGCTGCAGATTGCGAAGATGAGAAACCGGATAAAAGCTGTCAGTGATGCTATTTGTTTCCGTAATTTTGTGCTGGTATCTGCTCGTGCAAAGATCGCCGGTGAACTGGATGAGGTGCACAACTCCCATCATACAAAAGTAAGCAATCAGATCTTCAACGAACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1033

Amino Acids

113.93

Weight (kDa)

6.48

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	171 - 218	4.7e-14	PPR repeat family
PPR_3	PF13812	171 - 218	1.3e-06	Pentatricopeptide repeat domain
PPR	PF01535	175 - 204	3.9e-06	PPR repeat
PPR_2	PF13041	272 - 311	8.1e-07	PPR repeat family
PPR_2	PF13041	573 - 620	5.7e-07	PPR repeat family
PPR_2	PF13041	675 - 719	3.4e-11	PPR repeat family
PPR	PF01535	678 - 707	5.9e-07	PPR repeat
PPR_2	PF13041	777 - 823	2e-07	PPR repeat family
E_motif	PF20431	894 - 956	6.9e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39620 AT2G40720
fragaria_vesca	FvH4_7g21891
malus_domestica	MD07G1193300.v1.1
prunus_persica	Prupe.2G231000_v2.0.a1
pyrus_communis	pycom07g18250
rosa_chinensis	RchiOBHm_Chr1g0366141
rosa_laevigata	RLG00000027363
rosa_multiflora	Rmu_co8484073.1_g000001 Rmu_sc0003987.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290450 Rroxscaffold_4G00290460
rosa_rugosa	Rorug01G0327800 Rorug01G0327900
rosa_samantha	Rh1AG335900 Rh1BG297300 Rh1CG313300 Rh1DG329100
rosa_wichuraiana	Rw1G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1910
AasI	GACNNNNNNGTC	1 cut(s)	2478
Acc16I	TGCGCA	1 cut(s)	504
Acc65I	GGTACC	1 cut(s)	1886
AccB1I	GGYRCC	2 cut(s)	183, 1886
AccI	GTMKAC	1 cut(s)	626
AccIII	TCCGGA	2 cut(s)	891, 2054
AclI	AACGTT	1 cut(s)	2121
AclWI	GGATC	3 cut(s)	860, 873, 1282
AcsI	RAATTY	6 cut(s)	131, 294, 448, 1392, 1509, 1675
AcuI	CTGAAG	2 cut(s)	216, 1595
AcyI	GRCGYC	2 cut(s)	184, 1770
AfaI	GTAC	7 cut(s)	566, 587, 655, 758, 1055, 1888, 2487
AfiI	CCNNNNNNNGG	4 cut(s)	1829, 2188, 2189, 2642
AflIII	ACRYGT	1 cut(s)	753
AjnI	CCWGG	7 cut(s)	29, 257, 1468, 1519, 1836, 2078, 2508
AjuI	GAANNNNNNNTTGG	2 cut(s)	2211, 2243
AleI	CACNNNNGTG	1 cut(s)	2243
Alw21I	GWGCWC	5 cut(s)	693, 1243, 2325, 2373, 3051
Alw26I	GTCTC	8 cut(s)	170, 378, 409, 749, 963, 1488, 1657, 2900
Alw44I	GTGCAC	3 cut(s)	689, 2369, 3047
AlwI	GGATC	3 cut(s)	860, 873, 1282
Ama87I	CYCGRG	1 cut(s)	2830
Aor13HI	TCCGGA	2 cut(s)	891, 2054
AoxI	GGCC	4 cut(s)	137, 260, 917, 2126
ApaLI	GTGCAC	3 cut(s)	689, 2369, 3047
ApoI	RAATTY	6 cut(s)	131, 294, 448, 1392, 1509, 1675
ArsI	GACNNNNNNTTYG	2 cut(s)	666, 698
AseI	ATTAAT	1 cut(s)	2616
Asp700I	GAANNNNTTC	1 cut(s)	201
Asp718I	GGTACC	1 cut(s)	1886
AspA2I	CCTAGG	1 cut(s)	2735
AspLEI	GCGC	4 cut(s)	186, 484, 505, 1475
AspS9I	GGNCC	3 cut(s)	137, 738, 1108
AsuC2I	CCSGG	3 cut(s)	1088, 1112, 2850
AsuHPI	GGTGA	9 cut(s)	128, 782, 940, 1076, 1297, 1778, 2093, 2807, 3044
AsuII	TTCGAA	2 cut(s)	253, 672
AvaI	CYCGRG	1 cut(s)	2830
AvaII	GGWCC	2 cut(s)	738, 1108
AvrII	CCTAGG	1 cut(s)	2735
BaeGI	GKGCMC	3 cut(s)	693, 2373, 3051
BamHI	GGATCC	1 cut(s)	865
BanI	GGYRCC	2 cut(s)	183, 1886
BauI	CACGAG	1 cut(s)	3015
Bbv12I	GWGCWC	5 cut(s)	693, 1243, 2325, 2373, 3051
BbvCI	CCTCAGC	1 cut(s)	914
BccI	CCATC	8 cut(s)	316, 447, 589, 671, 1132, 2311, 2784, 3066
BcgI	CGANNNNNNTGC	2 cut(s)	1548, 1582
BciT130I	CCWGG	7 cut(s)	31, 259, 1470, 1521, 1838, 2080, 2510
BciVI	GTATCC	2 cut(s)	2051, 2162
BcnI	CCSGG	3 cut(s)	1088, 1112, 2850
BcoDI	GTCTC	8 cut(s)	170, 378, 409, 749, 963, 1488, 1657, 2900
BfaI	CTAG	5 cut(s)	1406, 1649, 1877, 2736, 2787
BfmI	CTRYAG	3 cut(s)	1782, 2160, 2936
BfoI	RGCGCY	1 cut(s)	187
BfuI	GTATCC	2 cut(s)	2051, 2162
BglII	AGATCT	2 cut(s)	2569, 3081
BlnI	CCTAGG	1 cut(s)	2735
BlpI	GCTNAGC	1 cut(s)	1987
Bme18I	GGWCC	2 cut(s)	738, 1108
BmeT110I	CYCGRG	1 cut(s)	2830
BmgT120I	GGNCC	3 cut(s)	137, 738, 1108
BmiI	GGNNCC	7 cut(s)	185, 739, 867, 948, 1834, 1888, 2634
BpmI	CTGGAG	1 cut(s)	2664
Bpu10I	CCTNAGC	1 cut(s)	914
Bpu1102I	GCTNAGC	1 cut(s)	1987
Bpu14I	TTCGAA	2 cut(s)	253, 672
BpuEI	CTTGAG	3 cut(s)	125, 1592, 2750
BpuMI	CCSGG	3 cut(s)	1088, 1112, 2850
BsaAI	YACGTR	1 cut(s)	2062
BsaHI	GRCGYC	2 cut(s)	184, 1770
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	1836, 2079, 2735
BsaWI	WCCGGW	3 cut(s)	891, 2054, 2958
Bsc4I	CCNNNNNNNGG	4 cut(s)	1829, 2188, 2189, 2642
Bse118I	RCCGGY	4 cut(s)	4, 330, 2477, 3029
Bse1I	ACTGG	3 cut(s)	219, 741, 3042
Bse3DI	GCAATG	5 cut(s)	1594, 1617, 2052, 2355, 2925
BseAI	TCCGGA	2 cut(s)	891, 2054
BseBI	CCWGG	7 cut(s)	31, 259, 1470, 1521, 1838, 2080, 2510
BseDI	CCNNGG	3 cut(s)	1836, 2079, 2735
BseGI	GGATG	6 cut(s)	1120, 1166, 2032, 2644, 2858, 3046
BseLI	CCNNNNNNNGG	4 cut(s)	1829, 2188, 2189, 2642
BseMI	GCAATG	5 cut(s)	1594, 1617, 2052, 2355, 2925
BseMII	CTCAG	6 cut(s)	420, 501, 905, 1859, 2001, 2873
BseNI	ACTGG	3 cut(s)	219, 741, 3042
BseRI	GAGGAG	2 cut(s)	122, 1024
BseSI	GKGCMC	3 cut(s)	693, 2373, 3051
BsgI	GTGCAG	3 cut(s)	1419, 1578, 2084
BshFI	GGCC	4 cut(s)	139, 262, 919, 2128
BshNI	GGYRCC	2 cut(s)	183, 1886
BsiHKAI	GWGCWC	5 cut(s)	693, 1243, 2325, 2373, 3051
BsiHKCI	CYCGRG	1 cut(s)	2830
BslFI	GGGAC	2 cut(s)	751, 1416
BslI	CCNNNNNNNGG	4 cut(s)	1829, 2188, 2189, 2642
BsmAI	GTCTC	8 cut(s)	170, 378, 409, 749, 963, 1488, 1657, 2900
BsmFI	GGGAC	2 cut(s)	751, 1416
BsmI	GAATGC	6 cut(s)	1713, 1741, 2047, 2350, 2680, 2746
BsnI	GGCC	4 cut(s)	139, 262, 919, 2128
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	2830
Bsp119I	TTCGAA	2 cut(s)	253, 672
Bsp1286I	GDGCHC	5 cut(s)	693, 1243, 2325, 2373, 3051
Bsp13I	TCCGGA	2 cut(s)	891, 2054
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	8 cut(s)	234, 865, 1287, 1879, 2569, 2813, 3024, 3081
Bsp1720I	GCTNAGC	1 cut(s)	1987
BspANI	GGCC	4 cut(s)	139, 262, 919, 2128
BspCNI	CTCAG	6 cut(s)	419, 500, 906, 1860, 2000, 2874
BspEI	TCCGGA	2 cut(s)	891, 2054
BspLI	GGNNCC	7 cut(s)	185, 739, 867, 948, 1834, 1888, 2634
BspMAI	CTGCAG	2 cut(s)	2164, 2940
BspPI	GGATC	3 cut(s)	860, 873, 1282
BspT104I	TTCGAA	2 cut(s)	253, 672
BspT107I	GGYRCC	2 cut(s)	183, 1886
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	5 cut(s)	1594, 1617, 2052, 2355, 2925
BsrFI	RCCGGY	4 cut(s)	4, 330, 2477, 3029
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	3 cut(s)	219, 741, 3042
BssAI	RCCGGY	4 cut(s)	4, 330, 2477, 3029
BssECI	CCNNGG	3 cut(s)	1836, 2079, 2735
BssMI	GATC	8 cut(s)	234, 865, 1287, 1879, 2569, 2813, 3024, 3081
BssNAI	GTATAC	1 cut(s)	627
BssNI	GRCGYC	2 cut(s)	184, 1770
BssSI	CACGAG	1 cut(s)	3015
BssT1I	CCWWGG	1 cut(s)	2735
Bst1107I	GTATAC	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	3015
Bst2UI	CCWGG	7 cut(s)	31, 259, 1470, 1521, 1838, 2080, 2510
Bst4CI	ACNGT	3 cut(s)	564, 695, 761
BstACI	GRCGYC	2 cut(s)	184, 1770
BstAPI	GCANNNNNTGC	6 cut(s)	1148, 1596, 1619, 1965, 2354, 2363
BstAUI	TGTACA	1 cut(s)	585
BstBAI	YACGTR	1 cut(s)	2062
BstBI	TTCGAA	2 cut(s)	253, 672
BstC8I	GCNNGC	8 cut(s)	188, 192, 1450, 1774, 2067, 2355, 2467, 2560
BstDEI	CTNAG	9 cut(s)	11, 406, 487, 775, 810, 914, 1868, 1987, 2882
BstENI	CCTNNNNNAGG	1 cut(s)	1827
BstF5I	GGATG	6 cut(s)	1120, 1166, 2032, 2644, 2858, 3046
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	4 cut(s)	186, 484, 505, 1475
BstKTI	GATC	8 cut(s)	237, 868, 1290, 1882, 2572, 2816, 3027, 3084
BstMAI	GTCTC	8 cut(s)	170, 378, 409, 749, 963, 1488, 1657, 2900
BstMBI	GATC	8 cut(s)	234, 865, 1287, 1879, 2569, 2813, 3024, 3081
BstNI	CCWGG	7 cut(s)	31, 259, 1470, 1521, 1838, 2080, 2510
BstNSI	RCATGY	5 cut(s)	757, 1557, 2477, 2777, 2892
BstSFI	CTRYAG	3 cut(s)	1782, 2160, 2936
BstSLI	GKGCMC	3 cut(s)	693, 2373, 3051
BstX2I	RGATCY	3 cut(s)	865, 2569, 3081
BstYI	RGATCY	3 cut(s)	865, 2569, 3081
BstZ17I	GTATAC	1 cut(s)	627
BsuI	GTATCC	2 cut(s)	2051, 2162
BsuRI	GGCC	4 cut(s)	139, 262, 919, 2128
BtsCI	GGATG	6 cut(s)	1120, 1166, 2032, 2644, 2858, 3046
BtsI	GCAGTG	3 cut(s)	960, 2169, 2373
BtsIMutI	CAGTG	8 cut(s)	431, 960, 1532, 2169, 2373, 2405, 2458, 2980
Cac8I	GCNNGC	8 cut(s)	188, 192, 1450, 1774, 2067, 2355, 2467, 2560
CfoI	GCGC	4 cut(s)	186, 484, 505, 1475
Cfr10I	RCCGGY	4 cut(s)	4, 330, 2477, 3029
Cfr13I	GGNCC	3 cut(s)	137, 738, 1108
CseI	GACGC	3 cut(s)	1441, 1531, 1778
CsiI	ACCWGGT	1 cut(s)	1519
Csp6I	GTAC	7 cut(s)	565, 586, 654, 757, 1054, 1887, 2486
CviQI	GTAC	7 cut(s)	565, 586, 654, 757, 1054, 1887, 2486
DdeI	CTNAG	9 cut(s)	11, 406, 487, 775, 810, 914, 1868, 1987, 2882
DinI	GGCGCC	1 cut(s)	185
DpnI	GATC	8 cut(s)	236, 867, 1289, 1881, 2571, 2815, 3026, 3083
DpnII	GATC	8 cut(s)	234, 865, 1287, 1879, 2569, 2813, 3024, 3081
DraI	TTTAAA	1 cut(s)	2607
DrdI	GACNNNNNNGTC	1 cut(s)	2478
DseDI	GACNNNNNNGTC	1 cut(s)	2478
Eco130I	CCWWGG	1 cut(s)	2735
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	738, 1108
Eco57I	CTGAAG	2 cut(s)	216, 1595
Eco88I	CYCGRG	1 cut(s)	2830
EcoNI	CCTNNNNNAGG	1 cut(s)	1827
EcoRII	CCWGG	7 cut(s)	29, 257, 1468, 1519, 1836, 2078, 2508
EcoT14I	CCWWGG	1 cut(s)	2735
EcoT22I	ATGCAT	2 cut(s)	1753, 2520
EgeI	GGCGCC	1 cut(s)	185
EheI	GGCGCC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	2735
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	2 cut(s)	751, 1416
FauI	CCCGC	2 cut(s)	778, 838
FauNDI	CATATG	2 cut(s)	1982, 2362
FblI	GTMKAC	1 cut(s)	626
FokI	GGATG	6 cut(s)	1127, 1173, 2039, 2651, 2865, 3053
FspBI	CTAG	5 cut(s)	1406, 1649, 1877, 2736, 2787
FspI	TGCGCA	1 cut(s)	504
GlaI	GCGC	4 cut(s)	185, 483, 504, 1474
GsuI	CTGGAG	1 cut(s)	2664
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	4 cut(s)	139, 262, 919, 2128
HgaI	GACGC	3 cut(s)	1441, 1531, 1778
HhaI	GCGC	4 cut(s)	186, 484, 505, 1475
Hin1I	GRCGYC	2 cut(s)	184, 1770
Hin6I	GCGC	4 cut(s)	184, 482, 503, 1473
HinP1I	GCGC	4 cut(s)	184, 482, 503, 1473
HindIII	AAGCTT	4 cut(s)	364, 648, 2601, 2726
HinfI	GANTC	9 cut(s)	86, 152, 538, 719, 1418, 2435, 2646, 2798, 2828
HphI	GGTGA	9 cut(s)	128, 782, 940, 1076, 1297, 1778, 2093, 2807, 3044
Hpy166II	GTNNAC	5 cut(s)	627, 691, 2371, 3035, 3049
Hpy188III	TCNNGA	7 cut(s)	238, 892, 1493, 1796, 1812, 2055, 2534
Hpy8I	GTNNAC	5 cut(s)	627, 691, 2371, 3035, 3049
HpyAV	CCTTC	9 cut(s)	309, 359, 640, 1276, 1375, 2017, 2165, 2486, 2490
HpyCH4III	ACNGT	3 cut(s)	564, 695, 761
HpyCH4IV	ACGT	2 cut(s)	2061, 2121
HpyF3I	CTNAG	9 cut(s)	11, 406, 487, 775, 810, 914, 1868, 1987, 2882
HpySE526I	ACGT	2 cut(s)	2061, 2121
Hsp92I	GRCGYC	2 cut(s)	184, 1770
HspAI	GCGC	4 cut(s)	184, 482, 503, 1473
KasI	GGCGCC	1 cut(s)	183
Kpn2I	TCCGGA	2 cut(s)	891, 2054
KpnI	GGTACC	1 cut(s)	1890
Kzo9I	GATC	8 cut(s)	234, 865, 1287, 1879, 2569, 2813, 3024, 3081
LmnI	GCTCC	3 cut(s)	2320, 2632, 2654
MabI	ACCWGGT	1 cut(s)	1519
MaeI	CTAG	5 cut(s)	1406, 1649, 1877, 2736, 2787
MaeII	ACGT	2 cut(s)	2061, 2121
MaeIII	GTNAC	7 cut(s)	770, 1726, 1766, 1871, 1976, 2137, 2825
MalI	GATC	8 cut(s)	236, 867, 1289, 1881, 2571, 2815, 3026, 3083
MboI	GATC	8 cut(s)	234, 865, 1287, 1879, 2569, 2813, 3024, 3081
MboII	GAAGA	5 cut(s)	686, 907, 2915, 2959, 3076
MfeI	CAATTG	1 cut(s)	61
MflI	RGATCY	3 cut(s)	865, 2569, 3081
MhlI	GDGCHC	5 cut(s)	693, 1243, 2325, 2373, 3051
Mly113I	GGCGCC	1 cut(s)	184
MlyI	GAGTC	3 cut(s)	713, 2655, 2822
MmeI	TCCRAC	3 cut(s)	233, 2259, 2526
Mph1103I	ATGCAT	2 cut(s)	1753, 2520
MroI	TCCGGA	2 cut(s)	891, 2054
MroXI	GAANNNNTTC	1 cut(s)	201
MslI	CAYNNNNRTG	8 cut(s)	236, 752, 1296, 1599, 2243, 2685, 2851, 2930
MspA1I	CMGCKG	2 cut(s)	284, 1991
MunI	CAATTG	1 cut(s)	61
Mva1269I	GAATGC	6 cut(s)	1713, 1741, 2047, 2350, 2680, 2746
MvaI	CCWGG	7 cut(s)	31, 259, 1470, 1521, 1838, 2080, 2510
NarI	GGCGCC	1 cut(s)	184
NciI	CCSGG	3 cut(s)	1088, 1112, 2850
NdeI	CATATG	2 cut(s)	1982, 2362
NdeII	GATC	8 cut(s)	234, 865, 1287, 1879, 2569, 2813, 3024, 3081
NlaIV	GGNNCC	7 cut(s)	185, 739, 867, 948, 1834, 1888, 2634
NmuCI	GTSAC	6 cut(s)	770, 1726, 1766, 1871, 2137, 2825
NsbI	TGCGCA	1 cut(s)	504
NsiI	ATGCAT	2 cut(s)	1753, 2520
NspI	RCATGY	5 cut(s)	757, 1557, 2477, 2777, 2892
NspV	TTCGAA	2 cut(s)	253, 672
OliI	CACNNNNGTG	1 cut(s)	2243
PacI	TTAATTAA	1 cut(s)	2616
PciI	ACATGT	1 cut(s)	753
PctI	GAATGC	6 cut(s)	1713, 1741, 2047, 2350, 2680, 2746
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	6 cut(s)	86, 152, 538, 1418, 2435, 2798
PleI	GAGTC	3 cut(s)	713, 2654, 2822
PluTI	GGCGCC	1 cut(s)	187
PpsI	GAGTC	3 cut(s)	713, 2654, 2822
Ppu21I	YACGTR	1 cut(s)	2062
PscI	ACATGT	1 cut(s)	753
PshBI	ATTAAT	1 cut(s)	2616
PsiI	TTATAA	1 cut(s)	1910
Psp1406I	AACGTT	1 cut(s)	2121
Psp6I	CCWGG	7 cut(s)	29, 257, 1468, 1519, 1836, 2078, 2508
PspGI	CCWGG	7 cut(s)	29, 257, 1468, 1519, 1836, 2078, 2508
PspN4I	GGNNCC	7 cut(s)	185, 739, 867, 948, 1834, 1888, 2634
PspPI	GGNCC	3 cut(s)	137, 738, 1108
PsrI	GAACNNNNNNTAC	2 cut(s)	2002, 2034
PstI	CTGCAG	2 cut(s)	2164, 2940
PsuI	RGATCY	3 cut(s)	865, 2569, 3081
PvuII	CAGCTG	1 cut(s)	1991
RsaI	GTAC	7 cut(s)	566, 587, 655, 758, 1055, 1888, 2487
RsaNI	GTAC	7 cut(s)	565, 586, 654, 757, 1054, 1887, 2486
RseI	CAYNNNNRTG	8 cut(s)	236, 752, 1296, 1599, 2243, 2685, 2851, 2930
Sau3AI	GATC	8 cut(s)	234, 865, 1287, 1879, 2569, 2813, 3024, 3081
Sau96I	GGNCC	3 cut(s)	137, 738, 1108
SchI	GAGTC	3 cut(s)	713, 2655, 2822
SduI	GDGCHC	5 cut(s)	693, 1243, 2325, 2373, 3051
SexAI	ACCWGGT	1 cut(s)	1519
SfcI	CTRYAG	3 cut(s)	1782, 2160, 2936
SfoI	GGCGCC	1 cut(s)	185
SfuI	TTCGAA	2 cut(s)	253, 672
SgrAI	CRCCGGYG	1 cut(s)	3029
SinI	GGWCC	2 cut(s)	738, 1108
SmiMI	CAYNNNNRTG	8 cut(s)	236, 752, 1296, 1599, 2243, 2685, 2851, 2930
SmlI	CTYRAG	3 cut(s)	104, 1607, 2729
SmoI	CTYRAG	3 cut(s)	104, 1607, 2729
SspDI	GGCGCC	1 cut(s)	183
SspMI	CTAG	5 cut(s)	1406, 1649, 1877, 2736, 2787
StyI	CCWWGG	1 cut(s)	2735
TaaI	ACNGT	3 cut(s)	564, 695, 761
TaiI	ACGT	2 cut(s)	2064, 2124
TatI	WGTACW	5 cut(s)	564, 585, 653, 756, 1053
TauI	GCSGC	3 cut(s)	287, 382, 715
TfiI	GAWTC	6 cut(s)	86, 152, 538, 1418, 2435, 2798
TscAI	CASTG	8 cut(s)	438, 960, 1539, 2169, 2373, 2412, 2458, 2980
TseFI	GTSAC	6 cut(s)	770, 1726, 1766, 1871, 2137, 2825
Tsp45I	GTSAC	6 cut(s)	770, 1726, 1766, 1871, 2137, 2825
TspGWI	ACGGA	2 cut(s)	1271, 2981
TspRI	CASTG	8 cut(s)	438, 960, 1539, 2169, 2373, 2412, 2458, 2980
VneI	GTGCAC	3 cut(s)	689, 2369, 3047
VpaK11BI	GGWCC	2 cut(s)	738, 1108
VspI	ATTAAT	1 cut(s)	2616
XagI	CCTNNNNNAGG	1 cut(s)	1827
XapI	RAATTY	6 cut(s)	131, 294, 448, 1392, 1509, 1675
XceI	RCATGY	5 cut(s)	757, 1557, 2477, 2777, 2892
XcmI	CCANNNNNNNNNTGG	2 cut(s)	27, 2242
XmaJI	CCTAGG	1 cut(s)	2735
XmiI	GTMKAC	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	5 cut(s)	1406, 1649, 1877, 2736, 2787
Zsp2I	ATGCAT	2 cut(s)	1753, 2520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.