pycom07g18530

Dolichyl-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011278
Physical Location & Seq
Reverse (-)
20982880 .. 20985837
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 981 bp
ATGGAGTTTGTAATTGTATGGGCGATGGTGGAGCTCCTCCTCGCCCTCATTCTCGTCGTCGCCACAGCCTTCATTTCTGCCGTCTTCTTCGAAGCTTATCGCAGAAAAAACAACAACGCGCATGTTGATGCTCCCGCGATCTTCGAGGACCCCAATTCGTTGAAACAGGTTCCTTGCCCTTCGATTTTTGATCCGGCAGAGAAGTATTTATCTTTGATTGTCCCTGCATTCAATGAGGAGCTTAGGCTTCCCGGAGCACTTGACGAAACCATGAATTATCTTCAACAACGTGCTGCTAAGGATAAGTCTTTTACTTATGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGGACAAAAAGAGTAGCATTTGAATTTGTAAAGAAATACGGTGTGGATAATGTGAGGATTATCCTTCTCGGTAGAAATCATGGAAAGGGAGAAGCTATTAGAAAAGGAATGCTACATTCACGTGGTGAGCTACTTCTAATGCTGGATGCTGATGGAGCAACCAAGATTCATGCAGTTGCCGAACAGGATAAGTTTAGGGACTCTTCTGCTGGTAATTCAAGTTTTAGAATATCTGATATCCCCATTGCTGCATTTGGTTCTCGTGCTCATCTTGAGGGGAAAGCCCTGGCTACAAGGAAGTGGTACCGCAATTTTTTGATGAAAGGTTTTCATCTTGTGGTACTTTTGGCTGCTGGTCCCGGGATTCGGGATACACAGTGTGGTTTTAAGATGTTCACTAGGGCTGCTGCTAGGAAGCTTTTCACTAACATCCGTTTGAACAGATGGTGCTTTGATGTTGAGGTGGTTTACCTGTGCAAATGGTTCAAAATCCCAATGCTTGAGATATCTGTAAGCTGGTCTGAAATTCCTGGATCGAAGGTGAACCCGTTGAGCATCCCAAATATGCTTTGGGAGCTTGTGCTCATGTCTGTTGGATATAGAACCGGCATGTGGAAAATTCGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
Glycos_transf_2

Protein Analysis

327

Amino Acids

36.77

Weight (kDa)

9.25

Isoelectric Point (pI)

22.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 71 - 174 1.4e-20 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39630
fragaria_vesca FvH4_7g22450 FvH4_7g22450
malus_domestica MD01G1133900.v1.1 MD07G1198100.v1.1
prunus_persica Prupe.2G235200_v2.0.a1
pyrus_communis pycom01g15470 pycom07g18530
rosa_chinensis RchiOBHm_Chr1g0367061
rosa_laevigata RLG00000027302
rosa_multiflora Rmu_sc0037952.1_g000001 Rmu_sc0037953.1_g000001
rosa_roxburghii Rroxscaffold_4G00289650
rosa_rugosa Rorug01G0334200 Rorug01G0334300
rosa_samantha Rh1AG341100 Rh1BG301600 Rh1CG317800 Rh1DG334000
rosa_wichuraiana Rw1G030300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 654
AccB1I GGYRCC 1 cut(s) 654
AccII CGCG 2 cut(s) 119, 137
AciI CCGC 2 cut(s) 135, 658
AclWI GGATC 2 cut(s) 185, 892
AcsI RAATTY 3 cut(s) 374, 876, 969
AcvI CACGTG 1 cut(s) 473
AdeI CACNNNGTG 2 cut(s) 476, 731
AfaI GTAC 2 cut(s) 656, 693
AfiI CCNNNNNNNGG 2 cut(s) 717, 963
AgsI TTSAA 7 cut(s) 163, 232, 284, 374, 570, 790, 838
AjnI CCWGG 2 cut(s) 636, 880
AluBI AGCT 9 cut(s) 34, 95, 241, 446, 481, 769, 867, 928, 978
AluI AGCT 9 cut(s) 34, 95, 241, 446, 481, 769, 867, 928, 978
Alw21I GWGCWC 4 cut(s) 36, 259, 619, 936
AlwI GGATC 2 cut(s) 185, 892
Ama87I CYCGRG 1 cut(s) 710
ApeKI GCWGC 5 cut(s) 293, 599, 701, 755, 758
ApoI RAATTY 3 cut(s) 374, 876, 969
Asp700I GAANNNNTTC 1 cut(s) 770
Asp718I GGTACC 1 cut(s) 654
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 148, 707
AsuC2I CCSGG 3 cut(s) 252, 711, 712
AsuHPI GGTGA 3 cut(s) 337, 488, 904
AsuII TTCGAA 1 cut(s) 90
AvaI CYCGRG 1 cut(s) 710
AvaII GGWCC 2 cut(s) 148, 707
BanI GGYRCC 1 cut(s) 654
BanII GRGCYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 612
BbrPI CACGTG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 4 cut(s) 36, 259, 619, 936
BbvI GCAGC 5 cut(s) 280, 586, 688, 742, 745
BccI CCATC 5 cut(s) 19, 332, 344, 497, 789
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 2 cut(s) 638, 882
BciVI GTATCC 1 cut(s) 715
BcnI CCSGG 3 cut(s) 252, 711, 712
BfaI CTAG 2 cut(s) 750, 762
BfuI GTATCC 1 cut(s) 715
BisI GCNGC 5 cut(s) 294, 600, 702, 756, 759
BlsI GCNGC 5 cut(s) 295, 601, 703, 757, 760
Bme1390I CCNGG 5 cut(s) 252, 638, 711, 712, 882
Bme18I GGWCC 2 cut(s) 148, 707
BmeT110I CYCGRG 1 cut(s) 710
BmgT120I GGNCC 2 cut(s) 148, 707
BmiI GGNNCC 4 cut(s) 150, 171, 656, 709
BmrFI CCNGG 5 cut(s) 252, 638, 711, 712, 882
BmsI GCATC 3 cut(s) 118, 487, 915
BpiI GAAGAC 1 cut(s) 76
Bpu10I CCTNAGC 2 cut(s) 242, 297
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 644, 872
BpuMI CCSGG 3 cut(s) 252, 711, 712
BsaAI YACGTR 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 636, 710
Bsc4I CCNNNNNNNGG 2 cut(s) 717, 963
Bse118I RCCGGY 1 cut(s) 956
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 2 cut(s) 638, 882
BseDI CCNNGG 2 cut(s) 636, 710
BseGI GGATG 3 cut(s) 502, 780, 906
BseLI CCNNNNNNNGG 2 cut(s) 717, 963
BseMI GCAATG 1 cut(s) 594
BseRI GAGGAG 3 cut(s) 26, 29, 251
BseXI GCAGC 5 cut(s) 280, 586, 688, 742, 745
Bsh1236I CGCG 2 cut(s) 119, 137
BshNI GGYRCC 1 cut(s) 654
BsiHKAI GWGCWC 4 cut(s) 36, 259, 619, 936
BsiHKCI CYCGRG 1 cut(s) 710
BsiSI CCGG 4 cut(s) 194, 252, 711, 957
BslFI GGGAC 4 cut(s) 206, 367, 563, 693
BslI CCNNNNNNNGG 2 cut(s) 717, 963
BsmFI GGGAC 4 cut(s) 206, 367, 563, 693
BsmI GAATGC 2 cut(s) 227, 465
BsoBI CYCGRG 1 cut(s) 710
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 4 cut(s) 36, 259, 619, 936
Bsp143I GATC 3 cut(s) 138, 190, 884
BspACI CCGC 2 cut(s) 135, 658
BspFNI CGCG 2 cut(s) 119, 137
BspLI GGNNCC 4 cut(s) 150, 171, 656, 709
BspPI GGATC 2 cut(s) 185, 892
BspT104I TTCGAA 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 654
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 956
BssAI RCCGGY 1 cut(s) 956
BssECI CCNNGG 2 cut(s) 636, 710
BssMI GATC 3 cut(s) 138, 190, 884
BssSI CACGAG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 2 cut(s) 638, 882
Bst4CI ACNGT 2 cut(s) 392, 729
Bst6I CTCTTC 1 cut(s) 559
BstBAI YACGTR 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 242, 297
BstF5I GGATG 3 cut(s) 502, 780, 906
BstFNI CGCG 2 cut(s) 119, 137
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 141, 193, 887
BstMBI GATC 3 cut(s) 138, 190, 884
BstMWI GCNNNNNNNGC 2 cut(s) 506, 925
BstNI CCWGG 2 cut(s) 638, 882
BstNSI RCATGY 2 cut(s) 125, 964
BstSCI CCNGG 5 cut(s) 250, 636, 709, 710, 880
BstUI CGCG 2 cut(s) 119, 137
BstV1I GCAGC 5 cut(s) 280, 586, 688, 742, 745
BstV2I GAAGAC 1 cut(s) 76
BsuI GTATCC 1 cut(s) 715
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 3 cut(s) 502, 780, 906
BtsIMutI CAGTG 1 cut(s) 734
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 956
Cfr13I GGNCC 2 cut(s) 148, 707
Cfr9I CCCGGG 1 cut(s) 710
Csp6I GTAC 2 cut(s) 655, 692
CviAII CATG 6 cut(s) 122, 271, 431, 521, 937, 961
CviQI GTAC 2 cut(s) 655, 692
DdeI CTNAG 2 cut(s) 242, 297
DpnI GATC 3 cut(s) 140, 192, 886
DpnII GATC 3 cut(s) 138, 190, 884
DraIII CACNNNGTG 2 cut(s) 476, 731
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco32I GATATC 2 cut(s) 589, 858
Eco47I GGWCC 2 cut(s) 148, 707
Eco53kI GAGCTC 1 cut(s) 34
Eco72I CACGTG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 636, 880
EcoRV GATATC 2 cut(s) 589, 858
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 6 cut(s) 125, 274, 434, 524, 940, 964
FaqI GGGAC 4 cut(s) 206, 367, 563, 693
FatI CATG 6 cut(s) 121, 270, 430, 520, 936, 960
FauI CCCGC 1 cut(s) 142
Fnu4HI GCNGC 5 cut(s) 294, 600, 702, 756, 759
FokI GGATG 3 cut(s) 509, 767, 893
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 5 cut(s) 294, 600, 702, 756, 759
FspBI CTAG 2 cut(s) 750, 762
GlaI GCGC 1 cut(s) 120
GluI GCNGC 5 cut(s) 294, 600, 702, 756, 759
HapII CCGG 4 cut(s) 194, 252, 711, 957
HhaI GCGC 1 cut(s) 121
Hin1II CATG 6 cut(s) 125, 274, 434, 524, 940, 964
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 2 cut(s) 93, 767
HinfI GANTC 3 cut(s) 517, 551, 715
HpaII CCGG 4 cut(s) 194, 252, 711, 957
HphI GGTGA 3 cut(s) 337, 488, 904
Hpy166II GTNNAC 3 cut(s) 747, 820, 895
Hpy188I TCNGA 2 cut(s) 586, 874
Hpy188III TCNNGA 2 cut(s) 623, 719
Hpy8I GTNNAC 3 cut(s) 747, 820, 895
Hpy99I CGWCG 2 cut(s) 59, 62
HpyAV CCTTC 4 cut(s) 79, 189, 425, 883
HpyCH4III ACNGT 2 cut(s) 392, 729
HpyCH4IV ACGT 2 cut(s) 289, 472
HpyCH4V TGCA 4 cut(s) 227, 524, 602, 828
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 925
HpyF3I CTNAG 2 cut(s) 242, 297
HpySE526I ACGT 2 cut(s) 289, 472
Hsp92II CATG 6 cut(s) 125, 274, 434, 524, 940, 964
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 658
Kzo9I GATC 3 cut(s) 138, 190, 884
LmnI GCTCC 7 cut(s) 31, 39, 136, 238, 254, 506, 925
Lsp1109I GCAGC 5 cut(s) 280, 586, 688, 742, 745
LweI GCATC 3 cut(s) 118, 487, 915
MaeI CTAG 2 cut(s) 750, 762
MaeII ACGT 2 cut(s) 289, 472
MalI GATC 3 cut(s) 140, 192, 886
MboI GATC 3 cut(s) 138, 190, 884
MboII GAAGA 5 cut(s) 76, 79, 133, 272, 546
MhlI GDGCHC 4 cut(s) 36, 259, 619, 936
MluCI AATT 8 cut(s) 12, 154, 274, 374, 565, 661, 876, 969
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 1 cut(s) 925
MnlI CCTC 9 cut(s) 47, 50, 56, 139, 229, 313, 399, 619, 805
MroXI GAANNNNTTC 1 cut(s) 770
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 2 cut(s) 126, 471
MspI CCGG 4 cut(s) 194, 252, 711, 957
MspR9I CCNGG 5 cut(s) 252, 638, 711, 712, 882
Mva1269I GAATGC 2 cut(s) 227, 465
MvaI CCWGG 2 cut(s) 638, 882
MvnI CGCG 2 cut(s) 119, 137
MwoI GCNNNNNNNGC 2 cut(s) 506, 925
NciI CCSGG 3 cut(s) 252, 711, 712
NdeII GATC 3 cut(s) 138, 190, 884
NlaIII CATG 6 cut(s) 125, 274, 434, 524, 940, 964
NlaIV GGNNCC 4 cut(s) 150, 171, 656, 709
NspI RCATGY 2 cut(s) 125, 964
NspV TTCGAA 1 cut(s) 90
PctI GAATGC 2 cut(s) 227, 465
PdmI GAANNNNTTC 1 cut(s) 770
PfeI GAWTC 2 cut(s) 517, 715
PfoI TCCNGGA 2 cut(s) 250, 880
PkrI GCNGC 5 cut(s) 295, 601, 703, 757, 760
PleI GAGTC 1 cut(s) 545
PmaCI CACGTG 1 cut(s) 473
PmlI CACGTG 1 cut(s) 473
PpsI GAGTC 1 cut(s) 545
Ppu21I YACGTR 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 636, 880
PspCI CACGTG 1 cut(s) 473
PspGI CCWGG 2 cut(s) 636, 880
PspN4I GGNNCC 4 cut(s) 150, 171, 656, 709
PspPI GGNCC 2 cut(s) 148, 707
PspPPI RGGWCCY 1 cut(s) 148
RsaI GTAC 2 cut(s) 656, 693
RsaNI GTAC 2 cut(s) 655, 692
RseI CAYNNNNRTG 2 cut(s) 126, 471
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 738
SatI GCNGC 5 cut(s) 294, 600, 702, 756, 759
Sau3AI GATC 3 cut(s) 138, 190, 884
Sau96I GGNCC 2 cut(s) 148, 707
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 5 cut(s) 252, 638, 711, 712, 882
SduI GDGCHC 4 cut(s) 36, 259, 619, 936
SfaNI GCATC 3 cut(s) 118, 487, 915
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 2 cut(s) 148, 707
SmaI CCCGGG 1 cut(s) 712
SmiMI CAYNNNNRTG 2 cut(s) 126, 471
SmlI CTYRAG 2 cut(s) 623, 851
SmoI CTYRAG 2 cut(s) 623, 851
Sse9I AATT 8 cut(s) 12, 154, 274, 374, 565, 661, 876, 969
SsiI CCGC 2 cut(s) 135, 658
SspMI CTAG 2 cut(s) 750, 762
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 5 cut(s) 250, 636, 709, 710, 880
TaaI ACNGT 2 cut(s) 392, 729
TaiI ACGT 2 cut(s) 292, 475
TaqI TCGA 4 cut(s) 90, 144, 182, 887
TasI AATT 8 cut(s) 12, 154, 274, 374, 565, 661, 876, 969
TfiI GAWTC 2 cut(s) 517, 715
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 1 cut(s) 734
TseI GCWGC 5 cut(s) 293, 599, 701, 755, 758
TspDTI ATGAA 5 cut(s) 61, 287, 509, 671, 686
TspGWI ACGGA 1 cut(s) 773
TspMI CCCGGG 1 cut(s) 710
TspRI CASTG 1 cut(s) 734
VpaK11BI GGWCC 2 cut(s) 148, 707
XapI RAATTY 3 cut(s) 374, 876, 969
XceI RCATGY 2 cut(s) 125, 964
XcmI CCANNNNNNNNNTGG 1 cut(s) 918
XmaI CCCGGG 1 cut(s) 710
XmnI GAANNNNTTC 1 cut(s) 770
XspI CTAG 2 cut(s) 750, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.