pycom07g21440

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0010989
Physical Location & Seq
Forward (+)
23155432 .. 23158280
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21440.5

Sequence Viewer

Length: 1467 bp
ATGGGGAGCAGCGCAGGAGTTGGGGTGCTTCCTCCGGACTTTGCCTTGCTCAAGAATTGCAGCAAAGTATCAAGCTTTCGTGGCGGCAACACCACCATCAGCTTAAGCTTTCCGTCAAGATTTGGTTCAGATGCCAAAAACCACACAATTCTCAAGTCTTTTCCGGTCGCTTCTGCTGCTTCCGTCAGTGGCTCCGGCGGCGCCCAATACTCCGGTTCTGAGCAATTGCTGGATGTGCAAACAAAGCAGAAGAGGAGGGGAATAGCTGGGGTTGAAGAAGATGAACTGGAGAATCCAAAACTTTTAGCTGACCCGGATAGTTGTTTTTGTGAGTTTAGAGGAGTGGAGATACACCACAAGGTATATGATGCACAATCACAGGTACATGAGGCTGAGGCTCTCTCTAGCCAGACTAAGAATGTTGGGTTTCCTATGATTTTGTTACATGGCTTCGGAGCCTCAGTTTTCTCGTTCAGTCGAGTTATGAAGCCGTTGGCAGAGGCTACTGGTTCCAAAGTTCTTGCCTTTGATAGACCAGCCTTTGGATTGACATCAAGGGTAAGCGCTTTTGGGCATTTATCTTCTGAAAATGGGGAATCCAAGCCTTTGAATCCGTATTCCATGGCGTTTGCAGTGCTTGCTACCTTGTACTTCATTGATTTTCTGGCAGCTGAGAAGGCGATTCTAGTGGGGCATTCCGCTGGTTGTCTTGTAGCAGTTGATTCATATTTTGAATCCCCAGAGCGTGTTGCTGCTCTAATCCTTATCTCCCCAGCAATTTTTGCCCCAAGGGCTATTGAGAAGGTTGCTAAGGGCCATCAACCGGAAGAAGATAACCAGACTGAAGAAGATGCCTCAAATTCTGTAAATCAAGGAAATCCATTTATCCAGTTTTTCAAGACTCTGTCCAAGTTTACCAAATTTATTTCAGATGCAGTAATGCGACTCGTGAAGGGAATGGTTGGCATGCTTAACTCTTTGTACAAGAAATTCTTATTGGCTATTCTACGCTCTGCCTTTGCTGCAATGCTCGTGAGGATGGTTATTGATAAATTTGGCGTTGCTGGTGTTAAGAATGCGTGGTATGACTCGAAACAAGTCACTGAACATGTCATACAAGGTTATACAAAGCCATTGAGGATTAAGGGTTGGGACAAGGCACTTCTGGAGTACACAGCAGCAATGCTCACCGACACTTCATCTGAGTCGAAGCCACCATTGTCGAAAAGACTTCGTGAAATCTCATGCCCTGTTCTGATTGTTACGGGTGATACTGACCGGATTGTCCCCTCGTGGAATGCCAAGAGGCTATCACAAGCCATACCCGGATCTTACCTTGAAGTAATAAAGCACTGTGGGCACTTGCCACATGAAGAGAAATTTCATGAGTTTGTCTCGATAGTTAAGAAGTTTCTGCAAACAGCTTTGGGAGACTCTCAGGAGCAGCACATACAAGCTGTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

489

Amino Acids

53.14

Weight (kDa)

8.36

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10840 AT3G10840 AT3G10840 AT3G10840
fragaria_vesca FvH4_7g26310
malus_domestica MD07G1238400.v1.1
prunus_persica Prupe.2G267200_v2.0.a1 Prupe.2G267200_v2.0.a1
pyrus_communis pycom07g21440
rosa_chinensis RchiOBHm_Chr1g0372761
rosa_laevigata RLG00000026874
rosa_multiflora Rmu_co8126034.1_g000001 Rmu_sc0009717.1_g000006
rosa_roxburghii Rroxscaffold_4G00284700
rosa_rugosa Rorug01G0374200
rosa_samantha Rh1AG382900 Rh1BG346500 Rh1CG359700 Rh1DG377500
rosa_wichuraiana Rw1G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1283
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 3 cut(s) 84, 198, 699
AclWI GGATC 1 cut(s) 1336
AcsI RAATTY 5 cut(s) 859, 920, 989, 1052, 1379
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 4 cut(s) 384, 650, 983, 1172
AfeI AGCGCT 1 cut(s) 565
AfiI CCNNNNNNNGG 2 cut(s) 542, 823
AflII CTTAAG 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 1108
AgsI TTSAA 5 cut(s) 275, 610, 734, 898, 1340
AjuI GAANNNNNNNTTGG 2 cut(s) 980, 1012
AluBI AGCT 8 cut(s) 75, 102, 108, 266, 308, 671, 1424, 1457
AluI AGCT 8 cut(s) 75, 102, 108, 266, 308, 671, 1424, 1457
Alw26I GTCTC 2 cut(s) 1399, 1425
AlwI GGATC 1 cut(s) 1336
Aor13HI TCCGGA 1 cut(s) 34
Aor51HI AGCGCT 1 cut(s) 565
AoxI GGCC 1 cut(s) 814
ApeKI GCWGC 8 cut(s) 9, 60, 176, 668, 752, 1022, 1178, 1444
ApoI RAATTY 5 cut(s) 859, 920, 989, 1052, 1379
AspLEI GCGC 3 cut(s) 14, 203, 566
AspS9I GGNCC 1 cut(s) 814
AsuC2I CCSGG 2 cut(s) 314, 1326
AsuHPI GGTGA 2 cut(s) 1180, 1280
BaeGI GKGCMC 1 cut(s) 1362
BanI GGYRCC 1 cut(s) 200
BauI CACGAG 3 cut(s) 947, 1031, 1291
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 8 cut(s) 21, 72, 163, 680, 739, 1009, 1190, 1456
BccI CCATC 3 cut(s) 104, 825, 1033
BceAI ACGGC 1 cut(s) 475
BcnI CCSGG 2 cut(s) 314, 1326
BcoDI GTCTC 2 cut(s) 1399, 1425
BfaI CTAG 2 cut(s) 405, 686
BfmI CTRYAG 1 cut(s) 1458
BfoI RGCGCY 2 cut(s) 204, 567
BfrI CTTAAG 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 791
Bme1390I CCNGG 2 cut(s) 314, 1326
BmgT120I GGNCC 1 cut(s) 814
BmiI GGNNCC 4 cut(s) 193, 202, 457, 511
BmrFI CCNGG 2 cut(s) 314, 1326
BmsI GCATC 4 cut(s) 121, 358, 841, 922
BplI GAGNNNNNCTC 4 cut(s) 386, 418, 1379, 1411
BpmI CTGGAG 2 cut(s) 308, 1187
Bpu10I CCTNAGC 2 cut(s) 393, 810
BpuEI CTTGAG 2 cut(s) 35, 137
BpuMI CCSGG 2 cut(s) 314, 1326
BsaBI GATNNNNATC 1 cut(s) 550
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 621, 788
BsaWI WCCGGW 5 cut(s) 34, 163, 212, 823, 1278
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 447, 477
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 823
Bse1I ACTGG 3 cut(s) 291, 511, 889
Bse3DI GCAATG 2 cut(s) 1032, 1188
Bse8I GATNNNNATC 1 cut(s) 550
BseAI TCCGGA 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 621, 788
BseGI GGATG 2 cut(s) 238, 1044
BseJI GATNNNNATC 1 cut(s) 550
BseLI CCNNNNNNNGG 2 cut(s) 542, 823
BseMI GCAATG 2 cut(s) 1032, 1188
BseMII CTCAG 6 cut(s) 210, 384, 474, 663, 1194, 1451
BseNI ACTGG 3 cut(s) 291, 511, 889
BseRI GAGGAG 2 cut(s) 268, 354
BseSI GKGCMC 1 cut(s) 1362
BseXI GCAGC 8 cut(s) 21, 72, 163, 680, 739, 1009, 1190, 1456
BseYI CCCAGC 2 cut(s) 266, 772
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 816
BshNI GGYRCC 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 168
BsiSI CCGG 8 cut(s) 35, 164, 195, 213, 314, 824, 1279, 1326
BslFI GGGAC 2 cut(s) 1166, 1271
BslI CCNNNNNNNGG 2 cut(s) 542, 823
BsmAI GTCTC 2 cut(s) 1399, 1425
BsmFI GGGAC 2 cut(s) 1166, 1271
BsmI GAATGC 3 cut(s) 694, 1081, 1303
BsnI GGCC 1 cut(s) 816
Bsp1286I GDGCHC 1 cut(s) 1362
Bsp13I TCCGGA 1 cut(s) 34
Bsp1407I TGTACA 1 cut(s) 981
Bsp143I GATC 1 cut(s) 1328
Bsp19I CCATGG 1 cut(s) 621
BspACI CCGC 3 cut(s) 84, 198, 699
BspANI GGCC 1 cut(s) 816
BspCNI CTCAG 6 cut(s) 211, 385, 473, 664, 1195, 1450
BspEI TCCGGA 1 cut(s) 34
BspHI TCATGA 1 cut(s) 1384
BspLI GGNNCC 4 cut(s) 193, 202, 457, 511
BspPI GGATC 1 cut(s) 1336
BspT107I GGYRCC 1 cut(s) 200
BspTI CTTAAG 1 cut(s) 103
BsrDI GCAATG 2 cut(s) 1032, 1188
BsrGI TGTACA 1 cut(s) 981
BsrI ACTGG 3 cut(s) 291, 511, 889
BssECI CCNNGG 2 cut(s) 621, 788
BssMI GATC 1 cut(s) 1328
BssNI GRCGYC 1 cut(s) 201
BssSI CACGAG 3 cut(s) 947, 1031, 1291
BssT1I CCWWGG 2 cut(s) 621, 788
Bst2BI CACGAG 3 cut(s) 947, 1031, 1291
Bst4CI ACNGT 1 cut(s) 1355
Bst6I CTCTTC 2 cut(s) 245, 1368
BstACI GRCGYC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 103
BstAPI GCANNNNNTGC 2 cut(s) 638, 782
BstAUI TGTACA 1 cut(s) 981
BstC8I GCNNGC 2 cut(s) 639, 968
BstDEI CTNAG 8 cut(s) 219, 393, 414, 460, 672, 810, 1203, 1437
BstDSI CCRYGG 1 cut(s) 621
BstF5I GGATG 2 cut(s) 238, 1044
BstH2I RGCGCY 2 cut(s) 204, 567
BstHHI GCGC 3 cut(s) 14, 203, 566
BstKTI GATC 1 cut(s) 1331
BstMAI GTCTC 2 cut(s) 1399, 1425
BstMBI GATC 1 cut(s) 1328
BstMCI CGRYCG 1 cut(s) 168
BstNSI RCATGY 2 cut(s) 970, 1112
BstSCI CCNGG 2 cut(s) 312, 1324
BstSFI CTRYAG 1 cut(s) 1458
BstSLI GKGCMC 1 cut(s) 1362
BstV1I GCAGC 8 cut(s) 21, 72, 163, 680, 739, 1009, 1190, 1456
BstX2I RGATCY 1 cut(s) 1328
BstYI RGATCY 1 cut(s) 1328
BsuRI GGCC 1 cut(s) 816
BtgI CCRYGG 1 cut(s) 621
BtsCI GGATG 2 cut(s) 238, 1044
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 4 cut(s) 193, 639, 1101, 1351
Cac8I GCNNGC 2 cut(s) 639, 968
CciI TCATGA 1 cut(s) 1384
CfoI GCGC 3 cut(s) 14, 203, 566
Cfr13I GGNCC 1 cut(s) 814
Csp6I GTAC 4 cut(s) 383, 649, 982, 1171
CviAII CATG 8 cut(s) 386, 446, 622, 967, 1109, 1245, 1370, 1385
CviQI GTAC 4 cut(s) 383, 649, 982, 1171
DdeI CTNAG 8 cut(s) 219, 393, 414, 460, 672, 810, 1203, 1437
DinI GGCGCC 1 cut(s) 202
DpnI GATC 1 cut(s) 1330
DpnII GATC 1 cut(s) 1328
DrdI GACNNNNNNGTC 1 cut(s) 1283
DseDI GACNNNNNNGTC 1 cut(s) 1283
Eam1104I CTCTTC 2 cut(s) 245, 1368
EarI CTCTTC 2 cut(s) 245, 1368
Eco130I CCWWGG 2 cut(s) 621, 788
Eco47III AGCGCT 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 864
EcoT14I CCWWGG 2 cut(s) 621, 788
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
ErhI CCWWGG 2 cut(s) 621, 788
FaeI CATG 8 cut(s) 389, 449, 625, 970, 1112, 1248, 1373, 1388
FalI AAGNNNNNCTT 2 cut(s) 977, 1009
FaqI GGGAC 2 cut(s) 1166, 1271
FatI CATG 8 cut(s) 385, 445, 621, 966, 1108, 1244, 1369, 1384
FokI GGATG 2 cut(s) 245, 1051
FspBI CTAG 2 cut(s) 405, 686
GlaI GCGC 3 cut(s) 13, 202, 565
GsaI CCCAGC 2 cut(s) 270, 776
GsuI CTGGAG 2 cut(s) 308, 1187
HaeII RGCGCY 2 cut(s) 204, 567
HaeIII GGCC 1 cut(s) 816
HapII CCGG 8 cut(s) 35, 164, 195, 213, 314, 824, 1279, 1326
HhaI GCGC 3 cut(s) 14, 203, 566
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 8 cut(s) 389, 449, 625, 970, 1112, 1248, 1373, 1388
Hin6I GCGC 3 cut(s) 12, 201, 564
HinP1I GCGC 3 cut(s) 12, 201, 564
HindIII AAGCTT 2 cut(s) 73, 106
HpaII CCGG 8 cut(s) 35, 164, 195, 213, 314, 824, 1279, 1326
HphI GGTGA 2 cut(s) 1180, 1280
Hpy166II GTNNAC 2 cut(s) 915, 1173
Hpy188I TCNGA 7 cut(s) 130, 220, 455, 586, 931, 1204, 1257
Hpy8I GTNNAC 2 cut(s) 915, 1173
HpyAV CCTTC 3 cut(s) 670, 796, 946
HpyCH4III ACNGT 1 cut(s) 1355
HpyCH4V TGCA 7 cut(s) 60, 238, 371, 632, 935, 1025, 1417
HpyF3I CTNAG 8 cut(s) 219, 393, 414, 460, 672, 810, 1203, 1437
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 8 cut(s) 389, 449, 625, 970, 1112, 1248, 1373, 1388
HspAI GCGC 3 cut(s) 12, 201, 564
KasI GGCGCC 1 cut(s) 200
Kpn2I TCCGGA 1 cut(s) 34
Kzo9I GATC 1 cut(s) 1328
LmnI GCTCC 4 cut(s) 6, 197, 455, 1441
Lsp1109I GCAGC 8 cut(s) 21, 72, 163, 680, 739, 1009, 1190, 1456
LweI GCATC 4 cut(s) 121, 358, 841, 922
MaeI CTAG 2 cut(s) 405, 686
MaeIII GTNAC 3 cut(s) 441, 1099, 1261
MalI GATC 1 cut(s) 1330
MboI GATC 1 cut(s) 1328
MboII GAAGA 9 cut(s) 262, 287, 290, 573, 839, 842, 857, 860, 1385
MfeI CAATTG 1 cut(s) 224
MflI RGATCY 1 cut(s) 1328
MhlI GDGCHC 1 cut(s) 1362
MluCI AATT 9 cut(s) 55, 147, 224, 777, 859, 920, 989, 1052, 1379
Mly113I GGCGCC 1 cut(s) 201
MlyI GAGTC 5 cut(s) 895, 939, 1082, 1214, 1427
MroI TCCGGA 1 cut(s) 34
MseI TTAA 5 cut(s) 104, 972, 1071, 1143, 1404
MspA1I CMGCKG 2 cut(s) 671, 701
MspCI CTTAAG 1 cut(s) 103
MspI CCGG 8 cut(s) 35, 164, 195, 213, 314, 824, 1279, 1326
MspR9I CCNGG 2 cut(s) 314, 1326
MunI CAATTG 1 cut(s) 224
Mva1269I GAATGC 3 cut(s) 694, 1081, 1303
NarI GGCGCC 1 cut(s) 201
NciI CCSGG 2 cut(s) 314, 1326
NcoI CCATGG 1 cut(s) 621
NdeII GATC 1 cut(s) 1328
NlaIII CATG 8 cut(s) 389, 449, 625, 970, 1112, 1248, 1373, 1388
NlaIV GGNNCC 4 cut(s) 193, 202, 457, 511
NmuCI GTSAC 1 cut(s) 1099
NspI RCATGY 2 cut(s) 970, 1112
PaeI GCATGC 1 cut(s) 970
PagI TCATGA 1 cut(s) 1384
PciI ACATGT 1 cut(s) 1108
PctI GAATGC 3 cut(s) 694, 1081, 1303
PfeI GAWTC 6 cut(s) 292, 596, 610, 682, 722, 734
PflFI GACNNNGTC 1 cut(s) 904
PflMI CCANNNNNTGG 1 cut(s) 542
PleI GAGTC 5 cut(s) 895, 939, 1082, 1213, 1427
PluTI GGCGCC 1 cut(s) 204
PpsI GAGTC 5 cut(s) 895, 939, 1082, 1213, 1427
PscI ACATGT 1 cut(s) 1108
PspFI CCCAGC 2 cut(s) 266, 772
PspN4I GGNNCC 4 cut(s) 193, 202, 457, 511
PspPI GGNCC 1 cut(s) 814
PsrI GAACNNNNNNTAC 2 cut(s) 1098, 1130
PsuI RGATCY 1 cut(s) 1328
PsyI GACNNNGTC 1 cut(s) 904
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 4 cut(s) 384, 650, 983, 1172
RsaNI GTAC 4 cut(s) 383, 649, 982, 1171
SaqAI TTAA 5 cut(s) 104, 972, 1071, 1143, 1404
Sau3AI GATC 1 cut(s) 1328
Sau96I GGNCC 1 cut(s) 814
SchI GAGTC 5 cut(s) 895, 939, 1082, 1214, 1427
ScrFI CCNGG 2 cut(s) 314, 1326
SduI GDGCHC 1 cut(s) 1362
SfaNI GCATC 4 cut(s) 121, 358, 841, 922
SfcI CTRYAG 1 cut(s) 1458
SfoI GGCGCC 1 cut(s) 202
SmlI CTYRAG 3 cut(s) 50, 103, 152
SmoI CTYRAG 3 cut(s) 50, 103, 152
SphI GCATGC 1 cut(s) 970
Sse9I AATT 9 cut(s) 55, 147, 224, 777, 859, 920, 989, 1052, 1379
SsiI CCGC 3 cut(s) 84, 198, 699
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 2 cut(s) 405, 686
StyD4I CCNGG 2 cut(s) 312, 1324
StyI CCWWGG 2 cut(s) 621, 788
TaaI ACNGT 1 cut(s) 1355
TaqI TCGA 5 cut(s) 478, 1091, 1208, 1223, 1397
TasI AATT 9 cut(s) 55, 147, 224, 777, 859, 920, 989, 1052, 1379
TatI WGTACW 3 cut(s) 648, 981, 1170
TauI GCSGC 2 cut(s) 87, 201
TfiI GAWTC 6 cut(s) 292, 596, 610, 682, 722, 734
Tru1I TTAA 5 cut(s) 104, 972, 1071, 1143, 1404
Tru9I TTAA 5 cut(s) 104, 972, 1071, 1143, 1404
TscAI CASTG 4 cut(s) 193, 639, 1108, 1358
TseFI GTSAC 1 cut(s) 1099
TseI GCWGC 8 cut(s) 9, 60, 176, 668, 752, 1022, 1178, 1444
Tsp45I GTSAC 1 cut(s) 1099
TspDTI ATGAA 7 cut(s) 297, 500, 643, 714, 1188, 1373, 1386
TspGWI ACGGA 3 cut(s) 102, 172, 603
TspRI CASTG 4 cut(s) 193, 639, 1108, 1358
Tth111I GACNNNGTC 1 cut(s) 904
Van91I CCANNNNNTGG 1 cut(s) 542
Vha464I CTTAAG 1 cut(s) 103
XapI RAATTY 5 cut(s) 859, 920, 989, 1052, 1379
XceI RCATGY 2 cut(s) 970, 1112
XspI CTAG 2 cut(s) 405, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.