Rorug01G0374200

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010989
Physical Location & Seq
Reverse (-)
48847242 .. 48848900
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0374200.1

Sequence Viewer

Length: 1374 bp
ATGGAGAGTAGGAACCACCACTTCCTTGTCATCTCCTGCACAGCACAAGGCCATATGAACCCTAGTCTCCAACTAGCTAAGCGGCTGATAGACATTGGAAGCTCACATGTCACCTTTGTCACCGACGTCGACCATGGCCTTGCCCAAATCAAATCCTTACCTTCTCTAGAAGGCTTATCATTTGCTTCGTTCTCCAATGGCTTTGACGATGGAGTCAGACCCGCCAATGACCCAGACCACATCATGTCTGAGCTGAAGCGGGCGGGATCACAATCACTCACAGCTTTGATTGAGAAGATCTCCAAATCCGATAAGCATGGCCCCATCACTTTCTTAATCTACACCATCCTCCTCCCTTGGGCTGCTGAAGTTGCTAGTAGTTTTGGTATAGCTTCTGCGTATCTATGCATATTATCCACCACTTCCTTTGCTATTTGCCACCACTACTTCAAAGATTACTATAAGAATCAGAGTAGCCTTCCATTTCCGAGTTCCATAACAATAGATGGTTTGCCACCTTTTGCTTCTGATGAGCTACCTTCCTATCTCCTACCCACCAGTCCACATGTTTCGATTCTCCCTACTTTGCAGGAACACTACCAAATCTTGGAACAGGATCCCAACTCTTGTGTGCTGCTTAACACCTTTGATGGGTTAGAGGAGGCAGCAATTAGAGATATGAGAAGTCATATGAATCTGATTACTGTTGGTCCCTTGATTCGTTCCAATGGTGTCGAAGTTTGTTGCGACTTGTTTGACAAGTCTGGGGACGATTACCTTCAGTGGCTGGACTCAAAAGCAGATTCTTCTGTGGTTTATGCATCGTTTGGGAGCATGGTGGTGTTGTCGAGTGGTCAGATGGAAGAGATACTACATGGTTTGGTTGACAGTGGACTCCCAGTTCTATGGGTTATCCGCAAGTCAGGAAATGAAGGGGGTCAAGAAACTCAAAATCTGATAAACAATACACTAAAGAAGGAACAGGGGTTAATAGTGCCATGGTGTTCACAAGTAGAGGTGCTGAACCACAAGTCAGTTGGGTGTTTTGTGATGCATTGTGGGTGGAACTCTACTATAGAGAGCTTGGCAGCTGGTGTTCCGGTTGTCGGGTGCCCTCATTTTGCAGACCAGACTACAAATGCCAAGCTCGTGGAGGAGCTGTGGGGGACTGGAGTTAGAGCCAGAGCGAATGAAGAGGGAGTGATCGAGCGTGGCGAGATTAAGATGTGTTTGGAAGTGGTGATGGGGGATGGAGAGAGAGGGGAGGACATGAGAAGGAATGCTCAGAAATGGAAAGGTTTGGCTGTGAAGGCTGTGAAGGAAGGTGGTTCTTCGGATGATAATCTCAGGAACTTCGTCAGAAGGTTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

457

Amino Acids

50.07

Weight (kDa)

5.37

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 249 - 391 5e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10840 AT3G10840 AT3G10840 AT3G10840
fragaria_vesca FvH4_7g26310
malus_domestica MD07G1238400.v1.1
prunus_persica Prupe.2G267200_v2.0.a1 Prupe.2G267200_v2.0.a1
pyrus_communis pycom07g21440
rosa_chinensis RchiOBHm_Chr1g0372761
rosa_laevigata RLG00000026874
rosa_multiflora Rmu_co8126034.1_g000001 Rmu_sc0009717.1_g000006
rosa_roxburghii Rroxscaffold_4G00284700
rosa_rugosa Rorug01G0374200
rosa_samantha Rh1AG382900 Rh1BG346500 Rh1CG359700 Rh1DG377500
rosa_wichuraiana Rw1G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AatII GACGTC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 1110
AccB7I CCANNNNNTGG 1 cut(s) 607
AccI GTMKAC 1 cut(s) 129
AciI CCGC 5 cut(s) 82, 222, 259, 263, 916
AclWI GGATC 3 cut(s) 274, 611, 624
AcuI CTGAAG 3 cut(s) 275, 387, 764
AcyI GRCGYC 1 cut(s) 126
AfiI CCNNNNNNNGG 4 cut(s) 358, 607, 651, 1106
AflIII ACRYGT 2 cut(s) 106, 565
AgsI TTSAA 1 cut(s) 451
AloI GAACNNNNNNTCC 2 cut(s) 885, 917
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 3 cut(s) 274, 611, 624
AlwNI CAGNNNCTG 1 cut(s) 787
AoxI GGCC 3 cut(s) 49, 136, 319
ApeKI GCWGC 4 cut(s) 362, 634, 665, 1088
AspS9I GGNCC 2 cut(s) 320, 710
AsuHPI GGTGA 3 cut(s) 103, 112, 1252
AvaII GGWCC 1 cut(s) 710
BaeGI GKGCMC 1 cut(s) 1115
BamHI GGATCC 1 cut(s) 616
BanI GGYRCC 1 cut(s) 1110
BarI GAAGNNNNNNTAC 2 cut(s) 855, 887
BauI CACGAG 1 cut(s) 1148
BbvI GCAGC 4 cut(s) 349, 621, 677, 1100
BccI CCATC 8 cut(s) 203, 332, 353, 500, 644, 853, 1237, 1244
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 4 cut(s) 63, 74, 167, 375
BfmI CTRYAG 1 cut(s) 1074
BglII AGATCT 1 cut(s) 297
BisI GCNGC 5 cut(s) 83, 363, 635, 666, 1089
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 5 cut(s) 84, 364, 636, 667, 1090
Bme18I GGWCC 1 cut(s) 710
BmgT120I GGNCC 2 cut(s) 320, 710
BmiI GGNNCC 5 cut(s) 14, 322, 618, 712, 1112
BmrI ACTGGG 1 cut(s) 893
BmsI GCATC 2 cut(s) 830, 1041
BmuI ACTGGG 1 cut(s) 893
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BpmI CTGGAG 1 cut(s) 1191
Bpu1102I GCTNAGC 1 cut(s) 78
BsaBI GATNNNNATC 2 cut(s) 271, 1341
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 3 cut(s) 133, 356, 998
BsaWI WCCGGW 1 cut(s) 1099
BsaXI ACNNNNNCTCC 2 cut(s) 1145, 1175
Bsc4I CCNNNNNNNGG 4 cut(s) 358, 607, 651, 1106
Bse1I ACTGG 3 cut(s) 558, 899, 1174
Bse8I GATNNNNATC 2 cut(s) 271, 1341
BseDI CCNNGG 3 cut(s) 133, 356, 998
BseGI GGATG 3 cut(s) 345, 1255, 1342
BseJI GATNNNNATC 2 cut(s) 271, 1341
BseLI CCNNNNNNNGG 4 cut(s) 358, 607, 651, 1106
BseMII CTCAG 3 cut(s) 240, 1298, 1360
BseNI ACTGG 3 cut(s) 558, 899, 1174
BseRI GAGGAG 3 cut(s) 341, 674, 1169
BseSI GKGCMC 1 cut(s) 1115
BseXI GCAGC 4 cut(s) 349, 621, 677, 1100
BsgI GTGCAG 1 cut(s) 22
BshFI GGCC 3 cut(s) 51, 138, 321
BshNI GGYRCC 1 cut(s) 1110
BsiSI CCGG 1 cut(s) 1100
BslFI GGGAC 3 cut(s) 696, 782, 1180
BslI CCNNNNNNNGG 4 cut(s) 358, 607, 651, 1106
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 3 cut(s) 696, 782, 1180
BsmI GAATGC 1 cut(s) 1285
BsnI GGCC 3 cut(s) 51, 138, 321
Bsp1286I GDGCHC 1 cut(s) 1115
Bsp143I GATC 4 cut(s) 266, 297, 616, 1203
Bsp1720I GCTNAGC 1 cut(s) 78
Bsp19I CCATGG 2 cut(s) 133, 998
BspACI CCGC 5 cut(s) 82, 222, 259, 263, 916
BspANI GGCC 3 cut(s) 51, 138, 321
BspCNI CTCAG 3 cut(s) 241, 1297, 1359
BspLI GGNNCC 5 cut(s) 14, 322, 618, 712, 1112
BspPI GGATC 3 cut(s) 274, 611, 624
BspT107I GGYRCC 1 cut(s) 1110
BsrI ACTGG 3 cut(s) 558, 899, 1174
BssECI CCNNGG 3 cut(s) 133, 356, 998
BssMI GATC 4 cut(s) 266, 297, 616, 1203
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 1148
BssT1I CCWWGG 3 cut(s) 133, 356, 998
Bst2BI CACGAG 1 cut(s) 1148
Bst4CI ACNGT 2 cut(s) 706, 890
Bst6I CTCTTC 2 cut(s) 858, 1188
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 4 cut(s) 78, 249, 1284, 1346
BstDSI CCRYGG 2 cut(s) 133, 998
BstF5I GGATG 3 cut(s) 345, 1255, 1342
BstKTI GATC 4 cut(s) 269, 300, 619, 1206
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 4 cut(s) 266, 297, 616, 1203
BstMWI GCNNNNNNNGC 2 cut(s) 371, 1310
BstNSI RCATGY 2 cut(s) 110, 569
BstSFI CTRYAG 1 cut(s) 1074
BstSLI GKGCMC 1 cut(s) 1115
BstV1I GCAGC 4 cut(s) 349, 621, 677, 1100
BstX2I RGATCY 2 cut(s) 297, 616
BstXI CCANNNNNNTGG 2 cut(s) 906, 1150
BstYI RGATCY 2 cut(s) 297, 616
BsuRI GGCC 3 cut(s) 51, 138, 321
BtgI CCRYGG 2 cut(s) 133, 998
BtsCI GGATG 3 cut(s) 345, 1255, 1342
BtsIMutI CAGTG 2 cut(s) 788, 895
Cac8I GCNNGC 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 787
Cfr13I GGNCC 2 cut(s) 320, 710
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 9 cut(s) 107, 134, 244, 317, 566, 835, 875, 999, 1270
DdeI CTNAG 4 cut(s) 78, 249, 1284, 1346
DpnI GATC 4 cut(s) 268, 299, 618, 1205
DpnII GATC 4 cut(s) 266, 297, 616, 1203
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 858, 1188
EarI CTCTTC 2 cut(s) 858, 1188
Eco130I CCWWGG 3 cut(s) 133, 356, 998
Eco47I GGWCC 1 cut(s) 710
Eco57I CTGAAG 3 cut(s) 275, 387, 764
EcoT14I CCWWGG 3 cut(s) 133, 356, 998
EcoT22I ATGCAT 3 cut(s) 410, 823, 1056
ErhI CCWWGG 3 cut(s) 133, 356, 998
FaeI CATG 9 cut(s) 110, 137, 247, 320, 569, 838, 878, 1002, 1273
FaqI GGGAC 3 cut(s) 696, 782, 1180
FatI CATG 9 cut(s) 106, 133, 243, 316, 565, 834, 874, 998, 1269
FauI CCCGC 3 cut(s) 229, 252, 256
FauNDI CATATG 2 cut(s) 54, 690
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 5 cut(s) 83, 363, 635, 666, 1089
FokI GGATG 3 cut(s) 332, 1262, 1349
Fsp4HI GCNGC 5 cut(s) 83, 363, 635, 666, 1089
FspBI CTAG 4 cut(s) 63, 74, 167, 375
GluI GCNGC 5 cut(s) 83, 363, 635, 666, 1089
GsuI CTGGAG 1 cut(s) 1191
HaeIII GGCC 3 cut(s) 51, 138, 321
HapII CCGG 1 cut(s) 1100
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 9 cut(s) 110, 137, 247, 320, 569, 838, 878, 1002, 1273
HincII GTYRAC 2 cut(s) 130, 886
HindII GTYRAC 2 cut(s) 130, 886
HinfI GANTC 8 cut(s) 213, 466, 574, 694, 718, 791, 803, 894
HpaII CCGG 1 cut(s) 1100
HphI GGTGA 3 cut(s) 103, 112, 1252
Hpy166II GTNNAC 5 cut(s) 130, 563, 886, 893, 1007
Hpy188III TCNNGA 4 cut(s) 167, 924, 941, 1348
Hpy8I GTNNAC 5 cut(s) 130, 563, 886, 893, 1007
Hpy99I CGWCG 2 cut(s) 128, 131
HpyCH4III ACNGT 2 cut(s) 706, 890
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 6 cut(s) 39, 408, 589, 821, 1054, 1124
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 1310
HpyF3I CTNAG 4 cut(s) 78, 249, 1284, 1346
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 9 cut(s) 110, 137, 247, 320, 569, 838, 878, 1002, 1273
Kzo9I GATC 4 cut(s) 266, 297, 616, 1203
LmnI GCTCC 2 cut(s) 831, 1156
Lsp1109I GCAGC 4 cut(s) 349, 621, 677, 1100
LweI GCATC 2 cut(s) 830, 1041
MaeI CTAG 4 cut(s) 63, 74, 167, 375
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 109, 118
MalI GATC 4 cut(s) 268, 299, 618, 1205
MboI GATC 4 cut(s) 266, 297, 616, 1203
MboII GAAGA 5 cut(s) 307, 798, 875, 1205, 1323
MflI RGATCY 2 cut(s) 297, 616
MhlI GDGCHC 1 cut(s) 1115
MluCI AATT 1 cut(s) 669
MlyI GAGTC 3 cut(s) 222, 785, 888
MmeI TCCRAC 1 cut(s) 94
Mph1103I ATGCAT 3 cut(s) 410, 823, 1056
MseI TTAA 4 cut(s) 335, 639, 989, 1221
MslI CAYNNNNRTG 1 cut(s) 839
MspA1I CMGCKG 1 cut(s) 1091
MspI CCGG 1 cut(s) 1100
Mva1269I GAATGC 1 cut(s) 1285
MwoI GCNNNNNNNGC 2 cut(s) 371, 1310
NcoI CCATGG 2 cut(s) 133, 998
NdeI CATATG 2 cut(s) 54, 690
NdeII GATC 4 cut(s) 266, 297, 616, 1203
NlaIII CATG 9 cut(s) 110, 137, 247, 320, 569, 838, 878, 1002, 1273
NlaIV GGNNCC 5 cut(s) 14, 322, 618, 712, 1112
NmuCI GTSAC 2 cut(s) 109, 118
NsiI ATGCAT 3 cut(s) 410, 823, 1056
NspI RCATGY 2 cut(s) 110, 569
PciI ACATGT 2 cut(s) 106, 565
PcsI WCGNNNNNNNCGW 1 cut(s) 1212
PctI GAATGC 1 cut(s) 1285
PfeI GAWTC 5 cut(s) 466, 574, 694, 718, 803
PflMI CCANNNNNTGG 1 cut(s) 607
PkrI GCNGC 5 cut(s) 84, 364, 636, 667, 1090
PleI GAGTC 3 cut(s) 221, 785, 888
PpsI GAGTC 3 cut(s) 221, 785, 888
PscI ACATGT 2 cut(s) 106, 565
PspN4I GGNNCC 5 cut(s) 14, 322, 618, 712, 1112
PspPI GGNCC 2 cut(s) 320, 710
PstNI CAGNNNCTG 1 cut(s) 787
PsuI RGATCY 2 cut(s) 297, 616
PvuII CAGCTG 1 cut(s) 1091
RseI CAYNNNNRTG 1 cut(s) 839
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 4 cut(s) 335, 639, 989, 1221
SatI GCNGC 5 cut(s) 83, 363, 635, 666, 1089
Sau3AI GATC 4 cut(s) 266, 297, 616, 1203
Sau96I GGNCC 2 cut(s) 320, 710
SchI GAGTC 3 cut(s) 222, 785, 888
SduI GDGCHC 1 cut(s) 1115
SfaNI GCATC 2 cut(s) 830, 1041
SfcI CTRYAG 1 cut(s) 1074
SinI GGWCC 1 cut(s) 710
SmiMI CAYNNNNRTG 1 cut(s) 839
Sse9I AATT 1 cut(s) 669
SsiI CCGC 5 cut(s) 82, 222, 259, 263, 916
SspMI CTAG 4 cut(s) 63, 74, 167, 375
StyI CCWWGG 3 cut(s) 133, 356, 998
TaaI ACNGT 2 cut(s) 706, 890
TaiI ACGT 1 cut(s) 129
TaqI TCGA 5 cut(s) 129, 572, 735, 848, 1206
TasI AATT 1 cut(s) 669
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 5 cut(s) 466, 574, 694, 718, 803
Tru1I TTAA 4 cut(s) 335, 639, 989, 1221
Tru9I TTAA 4 cut(s) 335, 639, 989, 1221
TscAI CASTG 2 cut(s) 788, 895
TseFI GTSAC 2 cut(s) 109, 118
TseI GCWGC 4 cut(s) 362, 634, 665, 1088
Tsp45I GTSAC 2 cut(s) 109, 118
TspDTI ATGAA 4 cut(s) 71, 707, 945, 1206
TspRI CASTG 2 cut(s) 788, 895
Van91I CCANNNNNTGG 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 710
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 2 cut(s) 110, 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 1034
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 4 cut(s) 63, 74, 167, 375
ZraI GACGTC 1 cut(s) 127
Zsp2I ATGCAT 3 cut(s) 410, 823, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.