Rmu_sc0009717.1_g000006

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009717.1
OG0010989
Physical Location & Seq
Reverse (-)
24553 .. 26287
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009717.1_g000006.1.cds

Sequence Viewer

Length: 1086 bp
atgaggagcttggcgggggtatgggtgttgccgagttgcagtaaagtttcgagctttaatggcagactcattagctcaagctttgcttcgagatttggtggcccagatactccaaactacgtcgttttgaagtcttctccggtggctgctgctgcttcagtcagcggctccggtgcccagtactccggttctgggggattgcttggtgtgcaaactaaggaggagaagaagaaggagggaatagctgggattgatcaagatgaactggtggaggatccaaagcttttagctgacccagatagttgtttctgtgagtttagtggagtggagatacatcataaggtatatgaagcacaattgaaggtgcatgagactgagagtgtctcaagtgagactaagactgttggtcttgctatgatcttgttgcatgggtttggagcctccgttttctcttggaaacgggttatgaagccgttggccgaggccattggttccaaagttctggcgtttgatcggccggcgtttgggttgacatctaggggaaactctgtcaggcatttatcttctggaaatggggaatccaaacctgtgaatccgtattccttggcattttcagtgcttgcaaccttgtatttcattgattttctggcagctgagaaggccattatagtggggcattcagctggttctcttgtagcagttgagtcatattttgaagcaccggaacgtgtggctgctctaatccttgttgccccagccatttttgccccaattacaacccagaaggttgacaagggatctcaacctggaacaaataaccagacagaagaagatggctcaaattcagttgataatgggaatccatttgtccagttctctaaggttctgtccaaatttgccagatttatttcacaggcaattatgggattggtgaaagggatggcagttatgctcaactctttgtataagaaattcttgtcggttcttctgcgctctgcttttgcgataatgctggtaaggaatttttatctggaggttttacattacacttggtttgtgttatccagatacggtctaagtaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

361

Amino Acids

38.77

Weight (kDa)

8.59

Isoelectric Point (pI)

29.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10840 AT3G10840 AT3G10840 AT3G10840
fragaria_vesca FvH4_7g26310
malus_domestica MD07G1238400.v1.1
prunus_persica Prupe.2G267200_v2.0.a1 Prupe.2G267200_v2.0.a1
pyrus_communis pycom07g21440
rosa_chinensis RchiOBHm_Chr1g0372761
rosa_laevigata RLG00000026874
rosa_multiflora Rmu_co8126034.1_g000001 Rmu_sc0009717.1_g000006
rosa_roxburghii Rroxscaffold_4G00284700
rosa_rugosa Rorug01G0374200
rosa_samantha Rh1AG382900 Rh1BG346500 Rh1CG359700 Rh1DG377500
rosa_wichuraiana Rw1G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 2 cut(s) 14, 165
AclWI GGATC 3 cut(s) 269, 282, 805
AcoI YGGCCR 2 cut(s) 477, 515
AcsI RAATTY 4 cut(s) 841, 893, 971, 1021
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 192, 524
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 3 cut(s) 130, 361, 716
AhdI GACNNNNNGTC 1 cut(s) 405
AjnI CCWGG 1 cut(s) 805
AluBI AGCT 9 cut(s) 9, 54, 75, 81, 245, 283, 290, 653, 683
AluI AGCT 9 cut(s) 9, 54, 75, 81, 245, 283, 290, 653, 683
Alw26I GTCTC 3 cut(s) 365, 386, 388
AlwI GGATC 3 cut(s) 269, 282, 805
AoxI GGCC 5 cut(s) 100, 477, 483, 515, 660
ApeKI GCWGC 5 cut(s) 146, 149, 152, 650, 734
ApoI RAATTY 4 cut(s) 841, 893, 971, 1021
AspLEI GCGC 1 cut(s) 993
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 943
BaeGI GKGCMC 1 cut(s) 178
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 5 cut(s) 133, 136, 139, 662, 721
BccI CCATC 2 cut(s) 827, 934
BceAI ACGGC 1 cut(s) 457
BciT130I CCWGG 1 cut(s) 807
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 3 cut(s) 365, 386, 388
BfaI CTAG 1 cut(s) 537
BisI GCNGC 6 cut(s) 147, 150, 153, 166, 651, 735
BlsI GCNGC 6 cut(s) 148, 151, 154, 167, 652, 736
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 807
BmeRI GACNNNNNGTC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 5 cut(s) 169, 175, 276, 439, 493
BmrFI CCNGG 1 cut(s) 807
BmrI ACTGGG 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 368, 400
BpmI CTGGAG 1 cut(s) 1052
BpuEI CTTGAG 2 cut(s) 61, 370
BsaJI CCNNGG 2 cut(s) 480, 603
BsaWI WCCGGW 4 cut(s) 139, 170, 185, 721
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 524
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 3 cut(s) 178, 270, 871
BseBI CCWGG 1 cut(s) 807
BseDI CCNNGG 2 cut(s) 480, 603
BseGI GGATG 1 cut(s) 945
BseLI CCNNNNNNNGG 2 cut(s) 192, 524
BseMII CTCAG 2 cut(s) 366, 645
BseNI ACTGG 3 cut(s) 178, 270, 871
BseRI GAGGAG 2 cut(s) 19, 236
BseSI GKGCMC 1 cut(s) 178
BseX3I CGGCCG 1 cut(s) 515
BseXI GCAGC 5 cut(s) 133, 136, 139, 662, 721
BseYI CCCAGC 2 cut(s) 245, 754
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 5 cut(s) 102, 479, 485, 517, 662
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 518
BsiSI CCGG 5 cut(s) 140, 171, 186, 518, 722
BslI CCNNNNNNNGG 2 cut(s) 192, 524
BsmAI GTCTC 3 cut(s) 365, 386, 388
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 5 cut(s) 102, 479, 485, 517, 662
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 5 cut(s) 253, 274, 417, 511, 797
BspACI CCGC 2 cut(s) 14, 165
BspANI GGCC 5 cut(s) 102, 479, 485, 517, 662
BspCNI CTCAG 2 cut(s) 367, 646
BspLI GGNNCC 5 cut(s) 169, 175, 276, 439, 493
BspPI GGATC 3 cut(s) 269, 282, 805
BspT107I GGYRCC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 3 cut(s) 178, 270, 871
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 2 cut(s) 480, 603
BssMI GATC 5 cut(s) 253, 274, 417, 511, 797
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 2 cut(s) 403, 1073
BstC8I GCNNGC 2 cut(s) 519, 621
BstDEI CTNAG 6 cut(s) 216, 375, 396, 654, 879, 1076
BstF5I GGATG 1 cut(s) 945
BstHHI GCGC 1 cut(s) 993
BstKTI GATC 5 cut(s) 256, 277, 420, 514, 800
BstMAI GTCTC 3 cut(s) 365, 386, 388
BstMBI GATC 5 cut(s) 253, 274, 417, 511, 797
BstMCI CGRYCG 1 cut(s) 518
BstMWI GCNNNNNNNGC 5 cut(s) 60, 152, 208, 659, 764
BstNI CCWGG 1 cut(s) 807
BstSCI CCNGG 1 cut(s) 805
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 5 cut(s) 133, 136, 139, 662, 721
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 2 cut(s) 274, 797
BstXI CCANNNNNNTGG 2 cut(s) 502, 670
BstYI RGATCY 2 cut(s) 274, 797
BstZI CGGCCG 1 cut(s) 515
BsuRI GGCC 5 cut(s) 102, 479, 485, 517, 662
BtsCI GGATG 1 cut(s) 945
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 2 cut(s) 519, 621
CfoI GCGC 1 cut(s) 993
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 368, 428
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 6 cut(s) 216, 375, 396, 654, 879, 1076
DpnI GATC 5 cut(s) 255, 276, 419, 513, 799
DpnII GATC 5 cut(s) 253, 274, 417, 511, 797
DriI GACNNNNNGTC 1 cut(s) 405
EaeI YGGCCR 2 cut(s) 477, 515
EagI CGGCCG 1 cut(s) 515
Eam1105I GACNNNNNGTC 1 cut(s) 405
EclXI CGGCCG 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 603
Eco52I CGGCCG 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 805
EcoT14I CCWWGG 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 2 cut(s) 371, 431
FalI AAGNNNNNCTT 4 cut(s) 70, 102, 959, 991
FatI CATG 2 cut(s) 367, 427
FauI CCCGC 1 cut(s) 7
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 6 cut(s) 147, 150, 153, 166, 651, 735
FokI GGATG 1 cut(s) 952
Fsp4HI GCNGC 6 cut(s) 147, 150, 153, 166, 651, 735
FspBI CTAG 1 cut(s) 537
GlaI GCGC 1 cut(s) 992
GluI GCNGC 6 cut(s) 147, 150, 153, 166, 651, 735
GsaI CCCAGC 2 cut(s) 249, 758
GsuI CTGGAG 1 cut(s) 1052
HaeIII GGCC 5 cut(s) 102, 479, 485, 517, 662
HapII CCGG 5 cut(s) 140, 171, 186, 518, 722
HhaI GCGC 1 cut(s) 993
Hin1II CATG 2 cut(s) 371, 431
Hin6I GCGC 1 cut(s) 991
HinP1I GCGC 1 cut(s) 991
HincII GTYRAC 2 cut(s) 531, 790
HindII GTYRAC 2 cut(s) 531, 790
HindIII AAGCTT 2 cut(s) 79, 281
HinfI GANTC 5 cut(s) 66, 578, 592, 704, 859
HpaII CCGG 5 cut(s) 140, 171, 186, 518, 722
HphI GGTGA 1 cut(s) 943
Hpy166II GTNNAC 2 cut(s) 531, 790
Hpy188III TCNNGA 5 cut(s) 90, 257, 567, 1031, 1065
Hpy8I GTNNAC 2 cut(s) 531, 790
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 226, 355, 652, 778
HpyCH4III ACNGT 2 cut(s) 403, 1073
HpyCH4IV ACGT 2 cut(s) 120, 727
HpyCH4V TGCA 5 cut(s) 39, 211, 367, 427, 623
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 152, 208, 659, 764
HpyF3I CTNAG 6 cut(s) 216, 375, 396, 654, 879, 1076
HpySE526I ACGT 2 cut(s) 120, 727
Hsp92II CATG 2 cut(s) 371, 431
HspAI GCGC 1 cut(s) 991
KroI GCCGGC 1 cut(s) 517
KroNI GCCGGC 1 cut(s) 519
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 253, 274, 417, 511, 797
LmnI GCTCC 3 cut(s) 6, 173, 437
Lsp1109I GCAGC 5 cut(s) 133, 136, 139, 662, 721
MaeI CTAG 1 cut(s) 537
MaeII ACGT 2 cut(s) 120, 727
MalI GATC 5 cut(s) 255, 276, 419, 513, 799
MboI GATC 5 cut(s) 253, 274, 417, 511, 797
MboII GAAGA 7 cut(s) 126, 238, 241, 555, 839, 842, 977
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 2 cut(s) 274, 797
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 8 cut(s) 356, 771, 841, 893, 918, 971, 1021, 1081
MlyI GAGTC 2 cut(s) 60, 713
MnlI CCTC 6 cut(s) 214, 229, 265, 451, 475, 1027
MroNI GCCGGC 1 cut(s) 517
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 668
MspA1I CMGCKG 3 cut(s) 165, 653, 683
MspI CCGG 5 cut(s) 140, 171, 186, 518, 722
MspR9I CCNGG 1 cut(s) 807
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 1 cut(s) 807
MwoI GCNNNNNNNGC 5 cut(s) 60, 152, 208, 659, 764
NaeI GCCGGC 1 cut(s) 519
NdeII GATC 5 cut(s) 253, 274, 417, 511, 797
NgoMIV GCCGGC 1 cut(s) 517
NlaIII CATG 2 cut(s) 371, 431
NlaIV GGNNCC 5 cut(s) 169, 175, 276, 439, 493
NmeAIII GCCGAG 2 cut(s) 57, 505
PctI GAATGC 1 cut(s) 676
PdiI GCCGGC 1 cut(s) 519
PfeI GAWTC 3 cut(s) 578, 592, 859
PkrI GCNGC 6 cut(s) 148, 151, 154, 167, 652, 736
PleI GAGTC 2 cut(s) 60, 712
PpsI GAGTC 2 cut(s) 60, 712
Psp6I CCWGG 1 cut(s) 805
PspFI CCCAGC 2 cut(s) 245, 754
PspGI CCWGG 1 cut(s) 805
PspN4I GGNNCC 5 cut(s) 169, 175, 276, 439, 493
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 2 cut(s) 274, 797
PvuII CAGCTG 2 cut(s) 653, 683
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 668
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 6 cut(s) 147, 150, 153, 166, 651, 735
Sau3AI GATC 5 cut(s) 253, 274, 417, 511, 797
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 2 cut(s) 60, 713
ScrFI CCNGG 1 cut(s) 807
SduI GDGCHC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 2 cut(s) 76, 385
SmoI CTYRAG 2 cut(s) 76, 385
Sse9I AATT 8 cut(s) 356, 771, 841, 893, 918, 971, 1021, 1081
SsiI CCGC 2 cut(s) 14, 165
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 805
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 2 cut(s) 403, 1073
TaiI ACGT 2 cut(s) 123, 730
TaqI TCGA 2 cut(s) 50, 89
TasI AATT 8 cut(s) 356, 771, 841, 893, 918, 971, 1021, 1081
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 3 cut(s) 578, 592, 859
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 621
TseI GCWGC 5 cut(s) 146, 149, 152, 650, 734
TspDTI ATGAA 4 cut(s) 276, 363, 482, 625
TspGWI ACGGA 2 cut(s) 433, 585
TspRI CASTG 1 cut(s) 621
XapI RAATTY 4 cut(s) 841, 893, 971, 1021
XspI CTAG 1 cut(s) 537
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.