Rroxscaffold_4G00284700

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010989
Physical Location & Seq
Reverse (-)
6273820 .. 6277463
3644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284700.1

Sequence Viewer

Length: 1452 bp
ATGAGGAGCTTGGCTGGGATATGGGTGTTGCCCAGTTGCAGTAAAGTTTCGAGCTTTAATGGCAGACTCATTAGCTCAAGCTTTGCTTCGAGATTTGATGGCCCAGATACTCCAAACTACGTCGTTTTGAAGTCTTCTCCAGTGGCTGCTGCTGCTGCTTCAGTCAGCGGCTCCGGTGCCCAGTACCCCGGTTCTGGGGGATTGCTTGGTGTGCAAACTAAGGAGAAGAAGAAGAAGGAGGAAATAGCTGGTATTGATCAAGATGAACTGGTGGAGGATCCAAAGCTTTTAGCTGACCCGGATAGTTGTTTTTGTGAGTTTAGTGGAGTGGAGATACATCATAAGGTATATGAAGCACAATTGAAGGTGCATGAGACTGAGAGTGTCTCAAGTGAGACCAAGACTGTTGGTCTTGCTATGATCTTGTTACATGGGTTTGGAGCCTCGGTTTTCTCTTGGAAACGGGTTATGAAGCCGTTGGCCGAGGCCATTGGTTCCAAAGTACTGGCGTTTGATAGGCCGGCGTTTGGGTTGACATCTAGGGGAAACTCTGTCAGGCATTTATCTTCTGGAAATGGGGAATCCAAACCTGTGAATCCGTATTCCATGGCATTTTCTGTGCTTGCAACCTTGTATTTCATTGATTTTCTGGCAGCTGAGAAGGCCATTATAGTGGGGCATTCAGCTGGTTCTCTTGTAGCAGTGGAGTCATATTTTGAAGCACCGGAACGTGTGGCCGCTCTAATCCTTGTTGCCCCAGCCATTTTTGCCCCAATTACAACCCAGAAGGTTGACAAGGGATCTCAACCTGGAACAAATAACCAGACAGAAGAAGATGGCTCAAATTCAGTTGATAATGGGAATCCATTTGTCCAGTTCTCTAAGGTTCTGTCCAAATTTGCCAGATTTATTTCACAGGCAATTATGGGATTGGTGAAAGGGATGGCAGTTATGCTCAACTCTTTGTATAAGAAATTCTTGTCAGCTCTTCTCCGCTCTGCTTTTGCGATAATGCTGGTAAGAATGGCAATCAATAAATTCGGTATTGCTGCTGTTAGGAATGCATGGTATGACTCGAAGAAAGTCACTGATGAAGACATCAGTGGTTATACAAAGCCATTGAGGACGAAGGGTTGGGATAAGGCACTTGTGGAGTACACAGCAGCAATGCTCACAGACACTTCATCGGAATCAAAGCCGCCATTGGCAAAGAGACTCCGTGATATCAAATGTCCTGTTCTGATTGTTACGGGTGATACTGACCGAATTGTCCCGTCATGGAATGCGGAGAGACTTTCAAAAGCCATACCGGGGTCTTGCTTTGAAGTAATAAAGCGTTGTGGGCACTTGCCACATGAAGAGAAAGTTGACGAGTTTGTTTCTATAGTTAAGAAATTTCTACAAAGCGCTTTTGATGATTCTCCACAGGAGCAATTACAAGTTATAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

483

Amino Acids

52.3

Weight (kDa)

8.53

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 139 - 257 6.1e-07 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 140 - 455 3.5e-20 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 141 - 460 1.6e-21 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10840 AT3G10840 AT3G10840 AT3G10840
fragaria_vesca FvH4_7g26310
malus_domestica MD07G1238400.v1.1
prunus_persica Prupe.2G267200_v2.0.a1 Prupe.2G267200_v2.0.a1
pyrus_communis pycom07g21440
rosa_chinensis RchiOBHm_Chr1g0372761
rosa_laevigata RLG00000026874
rosa_multiflora Rmu_co8126034.1_g000001 Rmu_sc0009717.1_g000006
rosa_roxburghii Rroxscaffold_4G00284700
rosa_rugosa Rorug01G0374200
rosa_samantha Rh1AG382900 Rh1BG346500 Rh1CG359700 Rh1DG377500
rosa_wichuraiana Rw1G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1268
AccB1I GGYRCC 1 cut(s) 176
AccBSI CCGCTC 2 cut(s) 740, 996
AciI CCGC 5 cut(s) 168, 738, 994, 1199, 1286
AclWI GGATC 3 cut(s) 272, 285, 808
AcoI YGGCCR 2 cut(s) 480, 735
AcsI RAATTY 5 cut(s) 844, 896, 974, 1037, 1394
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 3 cut(s) 185, 504, 1157
AfeI AGCGCT 1 cut(s) 1408
AfiI CCNNNNNNNGG 4 cut(s) 194, 195, 527, 1311
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 5 cut(s) 130, 364, 719, 1299, 1325
AhdI GACNNNNNGTC 1 cut(s) 408
AjnI CCWGG 1 cut(s) 808
Alw26I GTCTC 5 cut(s) 368, 389, 391, 1207, 1285
AlwI GGATC 3 cut(s) 272, 285, 808
AlwNI CAGNNNCTG 1 cut(s) 146
Aor51HI AGCGCT 1 cut(s) 1408
AoxI GGCC 6 cut(s) 100, 480, 486, 518, 663, 735
ApeKI GCWGC 7 cut(s) 146, 149, 152, 155, 653, 1049, 1163
ApoI RAATTY 5 cut(s) 844, 896, 974, 1037, 1394
AspLEI GCGC 1 cut(s) 1409
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 3 cut(s) 189, 299, 1311
AsuHPI GGTGA 2 cut(s) 946, 1265
BaeGI GKGCMC 2 cut(s) 181, 1347
BamHI GGATCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 176
BbsI GAAGAC 2 cut(s) 126, 1101
BbvI GCAGC 7 cut(s) 133, 136, 139, 142, 665, 1036, 1175
BccI CCATC 3 cut(s) 92, 830, 937
BceAI ACGGC 1 cut(s) 460
BciT130I CCWGG 1 cut(s) 810
BclI TGATCA 1 cut(s) 256
BcnI CCSGG 3 cut(s) 189, 299, 1311
BcoDI GTCTC 5 cut(s) 368, 389, 391, 1207, 1285
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 1383
BfoI RGCGCY 1 cut(s) 1410
BmcAI AGTACT 1 cut(s) 504
Bme1390I CCNGG 4 cut(s) 189, 299, 810, 1311
BmeRI GACNNNNNGTC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 5 cut(s) 172, 178, 279, 442, 496
BmrFI CCNGG 4 cut(s) 189, 299, 810, 1311
BmrI ACTGGG 2 cut(s) 27, 175
BmuI ACTGGG 2 cut(s) 27, 175
BpiI GAAGAC 2 cut(s) 126, 1101
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpmI CTGGAG 1 cut(s) 123
BpuEI CTTGAG 2 cut(s) 61, 373
BpuMI CCSGG 3 cut(s) 189, 299, 1311
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 5 cut(s) 187, 444, 483, 606, 1310
BsaWI WCCGGW 2 cut(s) 173, 724
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 195, 527, 1311
Bse118I RCCGGY 1 cut(s) 520
Bse1I ACTGG 6 cut(s) 33, 140, 181, 273, 510, 874
Bse3DI GCAATG 1 cut(s) 1173
BseBI CCWGG 1 cut(s) 810
BseDI CCNNGG 5 cut(s) 187, 444, 483, 606, 1310
BseGI GGATG 1 cut(s) 948
BseLI CCNNNNNNNGG 4 cut(s) 194, 195, 527, 1311
BseMI GCAATG 1 cut(s) 1173
BseMII CTCAG 2 cut(s) 369, 648
BseNI ACTGG 6 cut(s) 33, 140, 181, 273, 510, 874
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 2 cut(s) 181, 1347
BseXI GCAGC 7 cut(s) 133, 136, 139, 142, 665, 1036, 1175
BseYI CCCAGC 2 cut(s) 14, 757
BshFI GGCC 6 cut(s) 102, 482, 488, 520, 665, 737
BshNI GGYRCC 1 cut(s) 176
BsiSI CCGG 6 cut(s) 174, 189, 299, 521, 725, 1310
BslFI GGGAC 1 cut(s) 1256
BslI CCNNNNNNNGG 4 cut(s) 194, 195, 527, 1311
BsmAI GTCTC 5 cut(s) 368, 389, 391, 1207, 1285
BsmFI GGGAC 1 cut(s) 1256
BsmI GAATGC 3 cut(s) 679, 1066, 1288
BsnI GGCC 6 cut(s) 102, 482, 488, 520, 665, 737
Bso31I GGTCTC 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 181, 1347
Bsp143I GATC 4 cut(s) 256, 277, 420, 800
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 5 cut(s) 168, 738, 994, 1199, 1286
BspANI GGCC 6 cut(s) 102, 482, 488, 520, 665, 737
BspCNI CTCAG 2 cut(s) 370, 649
BspLI GGNNCC 5 cut(s) 172, 178, 279, 442, 496
BspPI GGATC 3 cut(s) 272, 285, 808
BspQI GCTCTTC 1 cut(s) 993
BspT107I GGYRCC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 389
BsrBI CCGCTC 2 cut(s) 740, 996
BsrDI GCAATG 1 cut(s) 1173
BsrFI RCCGGY 1 cut(s) 520
BsrI ACTGG 6 cut(s) 33, 140, 181, 273, 510, 874
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 5 cut(s) 187, 444, 483, 606, 1310
BssMI GATC 4 cut(s) 256, 277, 420, 800
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 1 cut(s) 406
Bst6I CTCTTC 2 cut(s) 993, 1353
BstC8I GCNNGC 2 cut(s) 522, 624
BstDEI CTNAG 4 cut(s) 219, 378, 657, 882
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 1 cut(s) 948
BstH2I RGCGCY 1 cut(s) 1410
BstHHI GCGC 1 cut(s) 1409
BstKTI GATC 4 cut(s) 259, 280, 423, 803
BstMAI GTCTC 5 cut(s) 368, 389, 391, 1207, 1285
BstMBI GATC 4 cut(s) 256, 277, 420, 800
BstMWI GCNNNNNNNGC 7 cut(s) 60, 152, 155, 211, 662, 767, 1342
BstNI CCWGG 1 cut(s) 810
BstSCI CCNGG 4 cut(s) 187, 297, 808, 1309
BstSFI CTRYAG 1 cut(s) 1383
BstSLI GKGCMC 2 cut(s) 181, 1347
BstV1I GCAGC 7 cut(s) 133, 136, 139, 142, 665, 1036, 1175
BstV2I GAAGAC 2 cut(s) 126, 1101
BstX2I RGATCY 2 cut(s) 277, 800
BstXI CCANNNNNNTGG 2 cut(s) 505, 673
BstYI RGATCY 2 cut(s) 277, 800
BsuRI GGCC 6 cut(s) 102, 482, 488, 520, 665, 737
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 1 cut(s) 948
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 4 cut(s) 147, 708, 1086, 1108
Cac8I GCNNGC 2 cut(s) 522, 624
CaiI CAGNNNCTG 1 cut(s) 146
CfoI GCGC 1 cut(s) 1409
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 184, 503, 1156
CviAII CATG 6 cut(s) 371, 431, 607, 1065, 1278, 1355
CviQI GTAC 3 cut(s) 184, 503, 1156
DdeI CTNAG 4 cut(s) 219, 378, 657, 882
DpnI GATC 4 cut(s) 258, 279, 422, 802
DpnII GATC 4 cut(s) 256, 277, 420, 800
DrdI GACNNNNNNGTC 1 cut(s) 1268
DriI GACNNNNNGTC 1 cut(s) 408
DseDI GACNNNNNNGTC 1 cut(s) 1268
EaeI YGGCCR 2 cut(s) 480, 735
Eam1104I CTCTTC 2 cut(s) 993, 1353
Eam1105I GACNNNNNGTC 1 cut(s) 408
EarI CTCTTC 2 cut(s) 993, 1353
Eco130I CCWWGG 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 389
Eco32I GATATC 1 cut(s) 1225
Eco47III AGCGCT 1 cut(s) 1408
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 808
EcoRV GATATC 1 cut(s) 1225
EcoT14I CCWWGG 1 cut(s) 606
EcoT22I ATGCAT 1 cut(s) 1066
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 6 cut(s) 374, 434, 610, 1068, 1281, 1358
FalI AAGNNNNNCTT 4 cut(s) 70, 102, 962, 994
FaqI GGGAC 1 cut(s) 1256
FatI CATG 6 cut(s) 370, 430, 606, 1064, 1277, 1354
FbaI TGATCA 1 cut(s) 256
FokI GGATG 1 cut(s) 955
FspBI CTAG 1 cut(s) 540
GlaI GCGC 1 cut(s) 1408
GsaI CCCAGC 2 cut(s) 18, 761
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 1410
HaeIII GGCC 6 cut(s) 102, 482, 488, 520, 665, 737
HapII CCGG 6 cut(s) 174, 189, 299, 521, 725, 1310
HhaI GCGC 1 cut(s) 1409
Hin1II CATG 6 cut(s) 374, 434, 610, 1068, 1281, 1358
Hin6I GCGC 1 cut(s) 1407
HinP1I GCGC 1 cut(s) 1407
HincII GTYRAC 3 cut(s) 534, 793, 1369
HindII GTYRAC 3 cut(s) 534, 793, 1369
HindIII AAGCTT 2 cut(s) 79, 284
HinfI GANTC 9 cut(s) 66, 581, 595, 707, 862, 1073, 1190, 1215, 1418
HpaII CCGG 6 cut(s) 174, 189, 299, 521, 725, 1310
HphI GGTGA 2 cut(s) 946, 1265
Hpy166II GTNNAC 4 cut(s) 534, 793, 1158, 1369
Hpy188I TCNGA 2 cut(s) 1189, 1242
Hpy188III TCNNGA 3 cut(s) 90, 260, 570
Hpy8I GTNNAC 4 cut(s) 534, 793, 1158, 1369
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 5 cut(s) 229, 358, 655, 781, 1123
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 2 cut(s) 120, 730
HpyCH4V TGCA 5 cut(s) 39, 214, 370, 626, 1064
HpyF10VI GCNNNNNNNGC 7 cut(s) 60, 152, 155, 211, 662, 767, 1342
HpyF3I CTNAG 4 cut(s) 219, 378, 657, 882
HpySE526I ACGT 2 cut(s) 120, 730
Hsp92II CATG 6 cut(s) 374, 434, 610, 1068, 1281, 1358
HspAI GCGC 1 cut(s) 1407
KroI GCCGGC 1 cut(s) 520
KroNI GCCGGC 1 cut(s) 522
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 256, 277, 420, 800
LguI GCTCTTC 1 cut(s) 993
LmnI GCTCC 4 cut(s) 6, 176, 440, 1429
Lsp1109I GCAGC 7 cut(s) 133, 136, 139, 142, 665, 1036, 1175
MaeI CTAG 1 cut(s) 540
MaeII ACGT 2 cut(s) 120, 730
MaeIII GTNAC 3 cut(s) 426, 1084, 1246
MalI GATC 4 cut(s) 258, 279, 422, 802
MbiI CCGCTC 2 cut(s) 740, 996
MboI GATC 4 cut(s) 256, 277, 420, 800
MfeI CAATTG 1 cut(s) 359
MflI RGATCY 2 cut(s) 277, 800
MhlI GDGCHC 2 cut(s) 181, 1347
MlyI GAGTC 4 cut(s) 60, 716, 1067, 1209
MnlI CCTC 5 cut(s) 232, 268, 454, 478, 1116
Mph1103I ATGCAT 1 cut(s) 1066
MroNI GCCGGC 1 cut(s) 520
MseI TTAA 2 cut(s) 57, 1389
MslI CAYNNNNRTG 1 cut(s) 671
MspA1I CMGCKG 3 cut(s) 168, 656, 686
MspI CCGG 6 cut(s) 174, 189, 299, 521, 725, 1310
MspR9I CCNGG 4 cut(s) 189, 299, 810, 1311
MunI CAATTG 1 cut(s) 359
Mva1269I GAATGC 3 cut(s) 679, 1066, 1288
MvaI CCWGG 1 cut(s) 810
MwoI GCNNNNNNNGC 7 cut(s) 60, 152, 155, 211, 662, 767, 1342
NaeI GCCGGC 1 cut(s) 522
NciI CCSGG 3 cut(s) 189, 299, 1311
NcoI CCATGG 1 cut(s) 606
NdeII GATC 4 cut(s) 256, 277, 420, 800
NgoMIV GCCGGC 1 cut(s) 520
NlaIII CATG 6 cut(s) 374, 434, 610, 1068, 1281, 1358
NlaIV GGNNCC 5 cut(s) 172, 178, 279, 442, 496
NmeAIII GCCGAG 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 1084
NsiI ATGCAT 1 cut(s) 1066
PciSI GCTCTTC 1 cut(s) 993
PctI GAATGC 3 cut(s) 679, 1066, 1288
PdiI GCCGGC 1 cut(s) 522
PfeI GAWTC 5 cut(s) 581, 595, 862, 1190, 1418
PleI GAGTC 4 cut(s) 60, 715, 1067, 1209
PpsI GAGTC 4 cut(s) 60, 715, 1067, 1209
Psp6I CCWGG 1 cut(s) 808
PspFI CCCAGC 2 cut(s) 14, 757
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 5 cut(s) 172, 178, 279, 442, 496
PspPI GGNCC 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 146
PsuI RGATCY 2 cut(s) 277, 800
PvuII CAGCTG 2 cut(s) 656, 686
RsaI GTAC 3 cut(s) 185, 504, 1157
RsaNI GTAC 3 cut(s) 184, 503, 1156
RseI CAYNNNNRTG 1 cut(s) 671
SapI GCTCTTC 1 cut(s) 993
SaqAI TTAA 2 cut(s) 57, 1389
Sau3AI GATC 4 cut(s) 256, 277, 420, 800
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 504
SchI GAGTC 4 cut(s) 60, 716, 1067, 1209
ScrFI CCNGG 4 cut(s) 189, 299, 810, 1311
SduI GDGCHC 2 cut(s) 181, 1347
SfcI CTRYAG 1 cut(s) 1383
SmiMI CAYNNNNRTG 1 cut(s) 671
SmlI CTYRAG 2 cut(s) 76, 388
SmoI CTYRAG 2 cut(s) 76, 388
SsiI CCGC 5 cut(s) 168, 738, 994, 1199, 1286
SspMI CTAG 1 cut(s) 540
StyD4I CCNGG 4 cut(s) 187, 297, 808, 1309
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 2 cut(s) 123, 733
TaqI TCGA 3 cut(s) 50, 89, 1076
TaqII GACCGA 1 cut(s) 1278
TatI WGTACW 2 cut(s) 502, 1155
TauI GCSGC 3 cut(s) 171, 740, 1201
TfiI GAWTC 5 cut(s) 581, 595, 862, 1190, 1418
Tru1I TTAA 2 cut(s) 57, 1389
Tru9I TTAA 2 cut(s) 57, 1389
TscAI CASTG 4 cut(s) 147, 708, 1093, 1108
TseFI GTSAC 1 cut(s) 1084
TseI GCWGC 7 cut(s) 146, 149, 152, 155, 653, 1049, 1163
Tsp45I GTSAC 1 cut(s) 1084
TspDTI ATGAA 7 cut(s) 279, 366, 485, 628, 1107, 1173, 1371
TspGWI ACGGA 2 cut(s) 588, 1208
TspRI CASTG 4 cut(s) 147, 708, 1093, 1108
XapI RAATTY 5 cut(s) 844, 896, 974, 1037, 1394
XspI CTAG 1 cut(s) 540
ZrmI AGTACT 1 cut(s) 504
Zsp2I ATGCAT 1 cut(s) 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.