Rh1BG346500

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010989
Physical Location & Seq
Forward (+)
47900969 .. 47901975
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG346500.1

Sequence Viewer

Length: 429 bp
ATGGCAATCAATAAATTCGGTATCGCTGCTGTTAGGAATGCATGGTATGACTCGAAGAAAGTCACTGATGAAGACATCAGTGGTTATACAAAGCCATTGAGGACGAAGGGTTGGGATAAGGCACTTGTGGAGTACACGGCAGCAATGCTCACAGACACTTCATCTGAATCAAAGCCACCATTGGCAAAGAGACTCCGTGATATCAAATGTCCTGTTCTGATTGTTACGGGTGATACTGACCGAATTGTCCCATCATGGAATGCGAAGAGACTTTCAAAAGCCATACCAGGGTCTTGCTTTGAAGTAATAAAGCGTTGTGGGCACTTGCCACATGAAGAGAAAGTTGACGAGTTTGTTTCAATAGTTAAGAAATTTCTACAAACCGCTTTTGATGATTCTCCGCAGGAGCAATTACGAGTTATAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

142

Amino Acids

15.98

Weight (kDa)

8.97

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 36 - 119 3.2e-07 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10840 AT3G10840 AT3G10840 AT3G10840
fragaria_vesca FvH4_7g26310
malus_domestica MD07G1238400.v1.1
prunus_persica Prupe.2G267200_v2.0.a1 Prupe.2G267200_v2.0.a1
pyrus_communis pycom07g21440
rosa_chinensis RchiOBHm_Chr1g0372761
rosa_laevigata RLG00000026874
rosa_multiflora Rmu_co8126034.1_g000001 Rmu_sc0009717.1_g000006
rosa_roxburghii Rroxscaffold_4G00284700
rosa_rugosa Rorug01G0374200
rosa_samantha Rh1AG382900 Rh1BG346500 Rh1CG359700 Rh1DG377500
rosa_wichuraiana Rw1G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AciI CCGC 2 cut(s) 384, 401
AcsI RAATTY 2 cut(s) 14, 371
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 3 cut(s) 276, 302, 360
AjnI CCWGG 1 cut(s) 286
Alw26I GTCTC 2 cut(s) 184, 262
ApeKI GCWGC 2 cut(s) 26, 140
ApoI RAATTY 2 cut(s) 14, 371
AsuHPI GGTGA 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 13, 152
BccI CCATC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 184, 262
BisI GCNGC 2 cut(s) 27, 141
BlsI GCNGC 2 cut(s) 28, 142
Bme1390I CCNGG 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 2 cut(s) 13, 152
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 2 cut(s) 184, 262
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 2 cut(s) 43, 265
Bsp1286I GDGCHC 1 cut(s) 324
BspACI CCGC 2 cut(s) 384, 401
BsrDI GCAATG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 288
Bst6I CTCTTC 2 cut(s) 260, 330
BstMAI GTCTC 2 cut(s) 184, 262
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 324
BstV1I GCAGC 2 cut(s) 13, 152
BstV2I GAAGAC 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 63, 85
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 42, 255, 332
CviJI RGCY 3 cut(s) 94, 175, 281
CviKI_1 RGCY 3 cut(s) 94, 175, 281
CviQI GTAC 1 cut(s) 133
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 260, 330
EarI CTCTTC 2 cut(s) 260, 330
Eco32I GATATC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 286
EcoRV GATATC 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 43
FaeI CATG 3 cut(s) 45, 258, 335
FaiI YATR 7 cut(s) 43, 48, 87, 256, 284, 333, 422
FaqI GGGAC 1 cut(s) 233
FatI CATG 3 cut(s) 41, 254, 331
Fnu4HI GCNGC 2 cut(s) 27, 141
Fsp4HI GCNGC 2 cut(s) 27, 141
GluI GCNGC 2 cut(s) 27, 141
Hin1II CATG 3 cut(s) 45, 258, 335
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 4 cut(s) 50, 167, 192, 395
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 135, 346
Hpy188I TCNGA 2 cut(s) 166, 219
Hpy8I GTNNAC 2 cut(s) 135, 346
HpyAV CCTTC 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
Hsp92II CATG 3 cut(s) 45, 258, 335
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 4 cut(s) 225, 273, 300, 389
Lsp1109I GCAGC 2 cut(s) 13, 152
MaeIII GTNAC 2 cut(s) 61, 223
MboII GAAGA 4 cut(s) 67, 83, 277, 347
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 4 cut(s) 14, 243, 371, 410
MlyI GAGTC 2 cut(s) 44, 186
MnlI CCTC 1 cut(s) 93
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 288
Mva1269I GAATGC 2 cut(s) 43, 265
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 319
NlaIII CATG 3 cut(s) 45, 258, 335
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 43
PctI GAATGC 2 cut(s) 43, 265
PfeI GAWTC 2 cut(s) 167, 395
PkrI GCNGC 2 cut(s) 28, 142
PleI GAGTC 2 cut(s) 44, 186
PpsI GAGTC 2 cut(s) 44, 186
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 27, 141
SchI GAGTC 2 cut(s) 44, 186
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 324
Sse9I AATT 4 cut(s) 14, 243, 371, 410
SsiI CCGC 2 cut(s) 384, 401
StyD4I CCNGG 1 cut(s) 286
TaqI TCGA 1 cut(s) 53
TaqII GACCGA 1 cut(s) 255
TasI AATT 4 cut(s) 14, 243, 371, 410
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 2 cut(s) 167, 395
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 2 cut(s) 70, 85
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 26, 140
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 84, 150, 348
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 70, 85
XapI RAATTY 2 cut(s) 14, 371
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.