RchiOBHm_Chr1g0372761

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010989
Physical Location & Seq
Forward (+)
61313066 .. 61315941
2876 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59673

Sequence Viewer

Length: 1449 bp
ATGAGGAGCTTGGCGGGTATATGGGTGTTGCCGAGTTGCAGTAAAGTTTCGAGCTTTAATGGCAGACTCATTAGCTCCAGCTTTGCTTCGAGATTTGGTGGCCCAGATACTCCAAACTACGTCGTTTTGAAGTCTTCTCCGGTGGCTGCTGCTGCTTCAGTCAGCGGCTCCGGTGCCCAGTACTCCGGTTCTGGGGGATTGCTTGGTGTGCAAACTAAGGAGGAGAAGAAGAAGGAGGGAATAGCTGGGATTGATCAAGATGAACTGGTGGAGGATCCAAAGCTTTTAGCTGACCCAGATAGTTGTTTCTGTGAGTTTAGTGGAGTGGAGATACATCATAAGGTATATGAAGCACAATTGAAGGTGCATGAGACTGAGAGTGTCTCAAGTGAGACTAAGACTGTTGGTCTTGCTATGATCTTGTTGCATGGGTTTGGAGCCTCGGTTTTCTCTTGGAAACGGGTTATGAAGCCGTTGGCCGAGGCCATTGGTTCCAAAGTTCTGGCGTTTGATAGGCCGGCGTTTGGGTTGACATCTAGGGGAAACTCTGTCAGGCATTTATCTTCTGGAAATGGGGAATCCAAACCTGTGAATCCGTATTCCTTGGCATTTTCAGTGCTTGCAACCTTGTATTTCGTTGATTTTCTGGCAGCTGAGAAGGCCATTATAGTGGGGCATTCAGCTGGTTCTCTTGTAGCAGTTGAGTCATATTTTGAAGCACCGGAACGTGTGGCTGCTCTAATCCTTGTTGCCCCAGCCATTTTTGCCCCAATTACAACCCAGAAGGTTGACAAGGGATCTCAACCTGGAACAAATAACCAGACAGAAGAAGAAGGCTCAAATTCAGTTGATAATGGGAATCCATTTGTCCAGTTCTCTAAGGTTCTGTCCAAATTTGCCAGATTTATTTCACAGGCAATTATGGGATTGGTGAAAGGGATGGCAGTTATGCTCAACTCTTTGTATAAGAAATTCTTGTCGGTTCTTCTGCGCTCTGCTTTTGCGATAATGCTGGTAAGAATGGCAATCAATAAATTCGGTATCGCTGCTGTTAGGAATGCATGGTATGACTCGAAGAAAGTCACTGATGAAGACATCAGTGGTTATACAAAGCCATTGAGGACGAAGGGTTGGGATAAGGCACTTGTGGAGTACACGGCAGCAATGCTCACAGACACTTCATCTGAATCAAAGCCACCATTGGCAAAGAGACTCTGTGATATCAAATGTCCCGTTCTGATTGTTACGGGTGATACTGACCGAATTGTCCCATCATGGAATGCGAAGAGACTTTCAAAAGCCATACCAGGGTCTTGCTTTGAAGTAATAAAGCGTTGTGGGCACTTGCCACATGAAGAGAAAGTTGACGAGTTTGTTTCAATAGTTAAGAAATTTCTACAAACCGCTTATGATGATTCTCCGCAGGAGCAATTAGGAGTTATAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

482

Amino Acids

52.01

Weight (kDa)

8.63

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 138 - 256 8.9e-07 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 139 - 454 2.3e-19 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 140 - 459 9.5e-21 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10840 AT3G10840 AT3G10840 AT3G10840
fragaria_vesca FvH4_7g26310
malus_domestica MD07G1238400.v1.1
prunus_persica Prupe.2G267200_v2.0.a1 Prupe.2G267200_v2.0.a1
pyrus_communis pycom07g21440
rosa_chinensis RchiOBHm_Chr1g0372761
rosa_laevigata RLG00000026874
rosa_multiflora Rmu_co8126034.1_g000001 Rmu_sc0009717.1_g000006
rosa_roxburghii Rroxscaffold_4G00284700
rosa_rugosa Rorug01G0374200
rosa_samantha Rh1AG382900 Rh1BG346500 Rh1CG359700 Rh1DG377500
rosa_wichuraiana Rw1G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1265
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 4 cut(s) 14, 165, 1404, 1421
AclWI GGATC 3 cut(s) 269, 282, 805
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 5 cut(s) 841, 893, 971, 1034, 1391
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 2 cut(s) 182, 1154
AfiI CCNNNNNNNGG 3 cut(s) 192, 524, 1308
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 6 cut(s) 130, 361, 716, 1296, 1322, 1380
AhdI GACNNNNNGTC 1 cut(s) 405
AjnI CCWGG 2 cut(s) 805, 1306
AluBI AGCT 9 cut(s) 9, 54, 75, 81, 245, 283, 290, 653, 683
AluI AGCT 9 cut(s) 9, 54, 75, 81, 245, 283, 290, 653, 683
Alw26I GTCTC 5 cut(s) 365, 386, 388, 1204, 1282
AlwI GGATC 3 cut(s) 269, 282, 805
AoxI GGCC 5 cut(s) 100, 477, 483, 515, 660
ApeKI GCWGC 7 cut(s) 146, 149, 152, 650, 734, 1046, 1160
ApoI RAATTY 5 cut(s) 841, 893, 971, 1034, 1391
AspLEI GCGC 1 cut(s) 993
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 943, 1262
BaeGI GKGCMC 2 cut(s) 178, 1344
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 173
BbsI GAAGAC 2 cut(s) 126, 1098
BbvI GCAGC 7 cut(s) 133, 136, 139, 662, 721, 1033, 1172
BccI CCATC 2 cut(s) 934, 1279
BceAI ACGGC 2 cut(s) 457, 1173
BciT130I CCWGG 2 cut(s) 807, 1308
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 5 cut(s) 365, 386, 388, 1204, 1282
BfaI CTAG 1 cut(s) 537
BisI GCNGC 8 cut(s) 147, 150, 153, 166, 651, 735, 1047, 1161
BlsI GCNGC 8 cut(s) 148, 151, 154, 167, 652, 736, 1048, 1162
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 2 cut(s) 807, 1308
BmeRI GACNNNNNGTC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 5 cut(s) 169, 175, 276, 439, 493
BmrFI CCNGG 2 cut(s) 807, 1308
BmrI ACTGGG 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 2 cut(s) 126, 1098
BplI GAGNNNNNCTC 2 cut(s) 368, 400
BpmI CTGGAG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 370
BsaJI CCNNGG 4 cut(s) 441, 480, 603, 1307
BsaWI WCCGGW 4 cut(s) 139, 170, 185, 721
BsaXI ACNNNNNCTCC 3 cut(s) 429, 459, 1428
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 524, 1308
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 3 cut(s) 178, 270, 871
Bse3DI GCAATG 1 cut(s) 1170
BseBI CCWGG 2 cut(s) 807, 1308
BseDI CCNNGG 4 cut(s) 441, 480, 603, 1307
BseGI GGATG 1 cut(s) 945
BseLI CCNNNNNNNGG 3 cut(s) 192, 524, 1308
BseMI GCAATG 1 cut(s) 1170
BseMII CTCAG 2 cut(s) 366, 645
BseNI ACTGG 3 cut(s) 178, 270, 871
BseRI GAGGAG 2 cut(s) 19, 236
BseSI GKGCMC 2 cut(s) 178, 1344
BseXI GCAGC 7 cut(s) 133, 136, 139, 662, 721, 1033, 1172
BseYI CCCAGC 2 cut(s) 245, 754
BshFI GGCC 5 cut(s) 102, 479, 485, 517, 662
BshNI GGYRCC 1 cut(s) 173
BsiSI CCGG 5 cut(s) 140, 171, 186, 518, 722
BslFI GGGAC 2 cut(s) 1215, 1253
BslI CCNNNNNNNGG 3 cut(s) 192, 524, 1308
BsmAI GTCTC 5 cut(s) 365, 386, 388, 1204, 1282
BsmFI GGGAC 2 cut(s) 1215, 1253
BsmI GAATGC 3 cut(s) 676, 1063, 1285
BsnI GGCC 5 cut(s) 102, 479, 485, 517, 662
Bsp1286I GDGCHC 2 cut(s) 178, 1344
Bsp143I GATC 4 cut(s) 253, 274, 417, 797
BspACI CCGC 4 cut(s) 14, 165, 1404, 1421
BspANI GGCC 5 cut(s) 102, 479, 485, 517, 662
BspCNI CTCAG 2 cut(s) 367, 646
BspLI GGNNCC 5 cut(s) 169, 175, 276, 439, 493
BspPI GGATC 3 cut(s) 269, 282, 805
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 1170
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 3 cut(s) 178, 270, 871
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 441, 480, 603, 1307
BssMI GATC 4 cut(s) 253, 274, 417, 797
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 807, 1308
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 2 cut(s) 1280, 1350
BstC8I GCNNGC 2 cut(s) 519, 621
BstDEI CTNAG 5 cut(s) 216, 375, 396, 654, 879
BstF5I GGATG 1 cut(s) 945
BstHHI GCGC 1 cut(s) 993
BstKTI GATC 4 cut(s) 256, 277, 420, 800
BstMAI GTCTC 5 cut(s) 365, 386, 388, 1204, 1282
BstMBI GATC 4 cut(s) 253, 274, 417, 797
BstMWI GCNNNNNNNGC 6 cut(s) 60, 152, 208, 659, 764, 1339
BstNI CCWGG 2 cut(s) 807, 1308
BstSCI CCNGG 2 cut(s) 805, 1306
BstSLI GKGCMC 2 cut(s) 178, 1344
BstV1I GCAGC 7 cut(s) 133, 136, 139, 662, 721, 1033, 1172
BstV2I GAAGAC 2 cut(s) 126, 1098
BstX2I RGATCY 2 cut(s) 274, 797
BstXI CCANNNNNNTGG 2 cut(s) 502, 670
BstYI RGATCY 2 cut(s) 274, 797
BsuRI GGCC 5 cut(s) 102, 479, 485, 517, 662
BtsCI GGATG 1 cut(s) 945
BtsIMutI CAGTG 3 cut(s) 621, 1083, 1105
Cac8I GCNNGC 2 cut(s) 519, 621
CfoI GCGC 1 cut(s) 993
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 181, 1153
CviAII CATG 5 cut(s) 368, 428, 1062, 1275, 1352
CviQI GTAC 2 cut(s) 181, 1153
DdeI CTNAG 5 cut(s) 216, 375, 396, 654, 879
DpnI GATC 4 cut(s) 255, 276, 419, 799
DpnII GATC 4 cut(s) 253, 274, 417, 797
DrdI GACNNNNNNGTC 1 cut(s) 1265
DriI GACNNNNNGTC 1 cut(s) 405
DseDI GACNNNNNNGTC 1 cut(s) 1265
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 1280, 1350
Eam1105I GACNNNNNGTC 1 cut(s) 405
EarI CTCTTC 2 cut(s) 1280, 1350
Eco130I CCWWGG 1 cut(s) 603
Eco32I GATATC 1 cut(s) 1222
Eco57I CTGAAG 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 805, 1306
EcoRV GATATC 1 cut(s) 1222
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 1063
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 5 cut(s) 371, 431, 1065, 1278, 1355
FalI AAGNNNNNCTT 2 cut(s) 959, 991
FaqI GGGAC 2 cut(s) 1215, 1253
FatI CATG 5 cut(s) 367, 427, 1061, 1274, 1351
FauI CCCGC 1 cut(s) 7
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 8 cut(s) 147, 150, 153, 166, 651, 735, 1047, 1161
FokI GGATG 1 cut(s) 952
Fsp4HI GCNGC 8 cut(s) 147, 150, 153, 166, 651, 735, 1047, 1161
FspBI CTAG 1 cut(s) 537
GlaI GCGC 1 cut(s) 992
GluI GCNGC 8 cut(s) 147, 150, 153, 166, 651, 735, 1047, 1161
GsaI CCCAGC 2 cut(s) 249, 758
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 5 cut(s) 102, 479, 485, 517, 662
HapII CCGG 5 cut(s) 140, 171, 186, 518, 722
HhaI GCGC 1 cut(s) 993
Hin1II CATG 5 cut(s) 371, 431, 1065, 1278, 1355
Hin6I GCGC 1 cut(s) 991
HinP1I GCGC 1 cut(s) 991
HincII GTYRAC 3 cut(s) 531, 790, 1366
HindII GTYRAC 3 cut(s) 531, 790, 1366
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 9 cut(s) 66, 578, 592, 704, 859, 1070, 1187, 1212, 1415
HpaII CCGG 5 cut(s) 140, 171, 186, 518, 722
HphI GGTGA 2 cut(s) 943, 1262
Hpy166II GTNNAC 4 cut(s) 531, 790, 1155, 1366
Hpy188I TCNGA 2 cut(s) 1186, 1239
Hpy188III TCNNGA 3 cut(s) 90, 257, 567
Hpy8I GTNNAC 4 cut(s) 531, 790, 1155, 1366
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 6 cut(s) 226, 355, 652, 778, 827, 1120
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 2 cut(s) 120, 727
HpyCH4V TGCA 6 cut(s) 39, 211, 367, 427, 623, 1061
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 152, 208, 659, 764, 1339
HpyF3I CTNAG 5 cut(s) 216, 375, 396, 654, 879
HpySE526I ACGT 2 cut(s) 120, 727
Hsp92II CATG 5 cut(s) 371, 431, 1065, 1278, 1355
HspAI GCGC 1 cut(s) 991
KroI GCCGGC 1 cut(s) 517
KroNI GCCGGC 1 cut(s) 519
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 4 cut(s) 253, 274, 417, 797
LmnI GCTCC 5 cut(s) 6, 80, 173, 437, 1426
Lsp1109I GCAGC 7 cut(s) 133, 136, 139, 662, 721, 1033, 1172
MaeI CTAG 1 cut(s) 537
MaeII ACGT 2 cut(s) 120, 727
MaeIII GTNAC 2 cut(s) 1081, 1243
MalI GATC 4 cut(s) 255, 276, 419, 799
MboI GATC 4 cut(s) 253, 274, 417, 797
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 2 cut(s) 274, 797
MhlI GDGCHC 2 cut(s) 178, 1344
MlyI GAGTC 4 cut(s) 60, 713, 1064, 1206
MnlI CCTC 6 cut(s) 214, 229, 265, 451, 475, 1113
Mph1103I ATGCAT 1 cut(s) 1063
MroNI GCCGGC 1 cut(s) 517
MseI TTAA 2 cut(s) 57, 1386
MslI CAYNNNNRTG 1 cut(s) 668
MspA1I CMGCKG 3 cut(s) 165, 653, 683
MspI CCGG 5 cut(s) 140, 171, 186, 518, 722
MspR9I CCNGG 2 cut(s) 807, 1308
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 3 cut(s) 676, 1063, 1285
MvaI CCWGG 2 cut(s) 807, 1308
MwoI GCNNNNNNNGC 6 cut(s) 60, 152, 208, 659, 764, 1339
NaeI GCCGGC 1 cut(s) 519
NdeII GATC 4 cut(s) 253, 274, 417, 797
NgoMIV GCCGGC 1 cut(s) 517
NlaIII CATG 5 cut(s) 371, 431, 1065, 1278, 1355
NlaIV GGNNCC 5 cut(s) 169, 175, 276, 439, 493
NmeAIII GCCGAG 2 cut(s) 57, 505
NmuCI GTSAC 1 cut(s) 1081
NsiI ATGCAT 1 cut(s) 1063
PctI GAATGC 3 cut(s) 676, 1063, 1285
PdiI GCCGGC 1 cut(s) 519
PfeI GAWTC 5 cut(s) 578, 592, 859, 1187, 1415
PkrI GCNGC 8 cut(s) 148, 151, 154, 167, 652, 736, 1048, 1162
PleI GAGTC 4 cut(s) 60, 712, 1064, 1206
PpsI GAGTC 4 cut(s) 60, 712, 1064, 1206
Psp6I CCWGG 2 cut(s) 805, 1306
PspFI CCCAGC 2 cut(s) 245, 754
PspGI CCWGG 2 cut(s) 805, 1306
PspN4I GGNNCC 5 cut(s) 169, 175, 276, 439, 493
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 2 cut(s) 274, 797
PvuII CAGCTG 2 cut(s) 653, 683
RsaI GTAC 2 cut(s) 182, 1154
RsaNI GTAC 2 cut(s) 181, 1153
RseI CAYNNNNRTG 1 cut(s) 668
SaqAI TTAA 2 cut(s) 57, 1386
SatI GCNGC 8 cut(s) 147, 150, 153, 166, 651, 735, 1047, 1161
Sau3AI GATC 4 cut(s) 253, 274, 417, 797
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 4 cut(s) 60, 713, 1064, 1206
ScrFI CCNGG 2 cut(s) 807, 1308
SduI GDGCHC 2 cut(s) 178, 1344
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
SsiI CCGC 4 cut(s) 14, 165, 1404, 1421
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 805, 1306
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 2 cut(s) 123, 730
TaqI TCGA 3 cut(s) 50, 89, 1073
TaqII GACCGA 1 cut(s) 1275
TatI WGTACW 2 cut(s) 180, 1152
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 5 cut(s) 578, 592, 859, 1187, 1415
Tru1I TTAA 2 cut(s) 57, 1386
Tru9I TTAA 2 cut(s) 57, 1386
TscAI CASTG 3 cut(s) 621, 1090, 1105
TseFI GTSAC 1 cut(s) 1081
TseI GCWGC 7 cut(s) 146, 149, 152, 650, 734, 1046, 1160
Tsp45I GTSAC 1 cut(s) 1081
TspDTI ATGAA 6 cut(s) 276, 363, 482, 1104, 1170, 1368
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 3 cut(s) 621, 1090, 1105
XapI RAATTY 5 cut(s) 841, 893, 971, 1034, 1391
XspI CTAG 1 cut(s) 537
ZrmI AGTACT 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.