pycom07g22280

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0010270
Physical Location & Seq
Forward (+)
23675184 .. 23677221
2038 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 801 bp
ATGAAGTGTTTGAAAATTTTCCTTCTTTTTTCCCTGCTTTCCGTCGCGTTTTCTCACGAGACCTTCGACTCCCACCTCCTGCCACGGCCGTTGATCCTTGAATACCAAGAAAACACCGAGACCCAGTCCAAGGAATTGGAGGATGAGATCAGATTACACTGCGCCAGCTGGAGATTTTCTGTGGAAGCAAACAATGTCAATCCTTGGAAAACAATCCCGGAGGAGTGTGCGGAGTATGTCAAGGATTACTTGACGGGTCGGGCTTATGGGATCGATCTCGAAAGGGTGTCTAAGGAGGCTGGGGTTTACGCCAAGAGTGTTGAGTTGAATGGTGATGGAAAGGATGTGTGGATTTTCGACATTGATGACACGCTGCTCTCTAATCTTCCCTATTATGCTGACCATGGTTACGGCTTGGAGGTTTTTGATAATGTGGAGTTTGATAAGTGGGTTGAGAAGGCCATGGCGCCTGCCATAAAGTCCAGCTTGAAACTCTATGAAGAGGTCTTGAGTTTGGGTTTTAAGGTCTTCTTGCTCACGGGGCGCACTGAAGGGAAAAGGAAGGTTACCGTTGAGAATCTGAACAATGCAGGGTTTCGAGATTGGCATAAGCTTATTTTGAGGTCCGCTGATGACCTCGAGAAACTGGCGACGATTTACAAGTCCGAGAAGAGGAGTGAGATGGAAAAGGAGGGATATAGAATACTTGGGAATTCCGGGGACCAGTGGAGTGATTTACTGGGTACCTCAGTCTCCCTCCGCTCGTTCAAGCTTCCGAATCCTATGTATTATATTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

267

Amino Acids

30.63

Weight (kDa)

5.15

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 40 - 266 6.2e-88 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25150 AT5G51260 AT5G51260
fragaria_vesca FvH4_7g27010 FvH4_7g27010 FvH4_7g27010
malus_domestica MD01G1177700.v1.1 MD07G1249500.v1.1
prunus_persica Prupe.2G273200_v2.0.a1
pyrus_communis pycom01g18850 pycom07g22280
rosa_chinensis RchiOBHm_Chr1g0373811
rosa_laevigata RLG00000026804
rosa_multiflora Rmu_ssc0000294.1_g000001
rosa_roxburghii Rroxscaffold_4G00283990
rosa_rugosa Rorug01G0379500
rosa_samantha Rh1AG388900 Rh1BG353100 Rh1CG366300 Rh1DG384000
rosa_wichuraiana Rw1G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 743
AccB1I GGYRCC 2 cut(s) 466, 743
AccBSI CCGCTC 1 cut(s) 762
AccII CGCG 1 cut(s) 47
AciI CCGC 3 cut(s) 230, 627, 760
AclWI GGATC 2 cut(s) 88, 278
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 2 cut(s) 15, 712
AcuI CTGAAG 1 cut(s) 570
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 1 cut(s) 745
AfiI CCNNNNNNNGG 2 cut(s) 130, 672
AgsI TTSAA 5 cut(s) 13, 101, 328, 490, 769
AluBI AGCT 4 cut(s) 168, 486, 613, 772
AluI AGCT 4 cut(s) 168, 486, 613, 772
Alw26I GTCTC 3 cut(s) 53, 113, 757
AlwI GGATC 2 cut(s) 88, 278
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 2 cut(s) 86, 459
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 2 cut(s) 15, 712
Asp700I GAANNNNTTC 1 cut(s) 17
Asp718I GGTACC 1 cut(s) 743
AspLEI GCGC 3 cut(s) 164, 469, 546
AspS9I GGNCC 2 cut(s) 624, 721
AsuC2I CCSGG 2 cut(s) 218, 718
AsuHPI GGTGA 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 2 cut(s) 624, 721
BaeI ACNNNNGTAYC 2 cut(s) 735, 768
BanI GGYRCC 2 cut(s) 466, 743
BauI CACGAG 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 520
BbvI GCAGC 1 cut(s) 360
BccI CCATC 2 cut(s) 329, 676
BceAI ACGGC 3 cut(s) 73, 101, 427
BcnI CCSGG 2 cut(s) 218, 718
BcoDI GTCTC 3 cut(s) 53, 113, 757
BfoI RGCGCY 1 cut(s) 470
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 2 cut(s) 218, 718
Bme18I GGWCC 2 cut(s) 624, 721
BmeT110I CYCGRG 1 cut(s) 638
BmgT120I GGNCC 2 cut(s) 624, 721
BmiI GGNNCC 3 cut(s) 468, 722, 745
BmrFI CCNGG 2 cut(s) 218, 718
BmrI ACTGGG 2 cut(s) 118, 749
BmuI ACTGGG 2 cut(s) 118, 749
BpiI GAAGAC 1 cut(s) 520
BpmI CTGGAG 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 529
BpuMI CCSGG 2 cut(s) 218, 718
Bsa29I ATCGAT 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 467
BsaI GGTCTC 2 cut(s) 53, 113
BsaJI CCNNGG 6 cut(s) 83, 129, 203, 403, 462, 717
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 672
Bse1I ACTGG 4 cut(s) 124, 651, 724, 744
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 6 cut(s) 83, 129, 203, 403, 462, 717
BseGI GGATG 2 cut(s) 148, 349
BseLI CCNNNNNNNGG 2 cut(s) 130, 672
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 4 cut(s) 124, 651, 724, 744
BseRI GAGGAG 2 cut(s) 236, 688
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 360
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 461
BshNI GGYRCC 2 cut(s) 466, 743
BshVI ATCGAT 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 2 cut(s) 218, 717
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 2 cut(s) 130, 672
BsmAI GTCTC 3 cut(s) 53, 113, 757
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 2 cut(s) 88, 461
Bso31I GGTCTC 2 cut(s) 53, 113
BsoBI CYCGRG 1 cut(s) 638
Bsp143I GATC 4 cut(s) 93, 147, 270, 274
Bsp19I CCATGG 2 cut(s) 403, 462
BspACI CCGC 3 cut(s) 230, 627, 760
BspANI GGCC 2 cut(s) 88, 461
BspCNI CTCAG 1 cut(s) 761
BspDI ATCGAT 1 cut(s) 273
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 3 cut(s) 468, 722, 745
BspPI GGATC 2 cut(s) 88, 278
BspT107I GGYRCC 2 cut(s) 466, 743
BspTNI GGTCTC 2 cut(s) 53, 113
BsrBI CCGCTC 1 cut(s) 762
BsrI ACTGG 4 cut(s) 124, 651, 724, 744
BssECI CCNNGG 6 cut(s) 83, 129, 203, 403, 462, 717
BssMI GATC 4 cut(s) 93, 147, 270, 274
BssNI GRCGYC 1 cut(s) 467
BssSI CACGAG 1 cut(s) 56
BssT1I CCWWGG 4 cut(s) 129, 203, 403, 462
Bst2BI CACGAG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 2 cut(s) 495, 665
BstACI GRCGYC 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 166, 471
BstDEI CTNAG 2 cut(s) 291, 748
BstDSI CCRYGG 3 cut(s) 83, 403, 462
BstEII GGTNACC 1 cut(s) 565
BstF5I GGATG 2 cut(s) 148, 349
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 3 cut(s) 164, 469, 546
BstKTI GATC 4 cut(s) 96, 150, 273, 277
BstMAI GTCTC 3 cut(s) 53, 113, 757
BstMBI GATC 4 cut(s) 93, 147, 270, 274
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 541
BstPI GGTNACC 1 cut(s) 565
BstSCI CCNGG 2 cut(s) 216, 716
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 520
BstXI CCANNNNNNTGG 1 cut(s) 136
BstZI CGGCCG 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 2 cut(s) 88, 461
BsuTUI ATCGAT 1 cut(s) 273
BtgI CCRYGG 3 cut(s) 83, 403, 462
BtsCI GGATG 2 cut(s) 148, 349
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 3 cut(s) 157, 546, 731
Cac8I GCNNGC 2 cut(s) 166, 471
CfoI GCGC 3 cut(s) 164, 469, 546
Cfr13I GGNCC 2 cut(s) 624, 721
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 1 cut(s) 744
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 3 cut(s) 404, 463, 798
CviJI RGCY 9 cut(s) 88, 168, 263, 299, 414, 461, 486, 613, 772
CviKI_1 RGCY 9 cut(s) 88, 168, 263, 299, 414, 461, 486, 613, 772
CviQI GTAC 1 cut(s) 744
DdeI CTNAG 2 cut(s) 291, 748
DinI GGCGCC 1 cut(s) 468
DpnI GATC 4 cut(s) 95, 149, 272, 276
DpnII GATC 4 cut(s) 93, 147, 270, 274
EaeI YGGCCR 1 cut(s) 86
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 495, 665
EarI CTCTTC 2 cut(s) 495, 665
EclXI CGGCCG 1 cut(s) 86
Eco130I CCWWGG 4 cut(s) 129, 203, 403, 462
Eco31I GGTCTC 2 cut(s) 53, 113
Eco47I GGWCC 2 cut(s) 624, 721
Eco52I CGGCCG 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 565
EcoO65I GGTNACC 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 712
EcoT14I CCWWGG 4 cut(s) 129, 203, 403, 462
EgeI GGCGCC 1 cut(s) 468
EheI GGCGCC 1 cut(s) 468
ErhI CCWWGG 4 cut(s) 129, 203, 403, 462
FaeI CATG 3 cut(s) 407, 466, 801
FalI AAGNNNNNCTT 6 cut(s) 233, 265, 470, 502, 515, 547
FaqI GGGAC 1 cut(s) 734
FatI CATG 3 cut(s) 403, 462, 797
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 2 cut(s) 155, 356
Fsp4HI GCNGC 1 cut(s) 374
GlaI GCGC 3 cut(s) 163, 468, 545
GluI GCNGC 1 cut(s) 374
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 190
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 2 cut(s) 88, 461
HapII CCGG 2 cut(s) 218, 717
HhaI GCGC 3 cut(s) 164, 469, 546
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 3 cut(s) 407, 466, 801
Hin6I GCGC 3 cut(s) 162, 467, 544
HinP1I GCGC 3 cut(s) 162, 467, 544
HindIII AAGCTT 2 cut(s) 611, 770
HinfI GANTC 3 cut(s) 68, 577, 778
HpaII CCGG 2 cut(s) 218, 717
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 4 cut(s) 152, 582, 667, 777
Hpy188III TCNNGA 5 cut(s) 56, 278, 508, 599, 640
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 2 cut(s) 47, 655
HpyAV CCTTC 5 cut(s) 32, 73, 451, 545, 556
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4V TGCA 1 cut(s) 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 541
HpyF3I CTNAG 2 cut(s) 291, 748
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 3 cut(s) 407, 466, 801
HspAI GCGC 3 cut(s) 162, 467, 544
KasI GGCGCC 1 cut(s) 466
KpnI GGTACC 1 cut(s) 747
Kzo9I GATC 4 cut(s) 93, 147, 270, 274
Lsp1109I GCAGC 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 407, 565
MalI GATC 4 cut(s) 95, 149, 272, 276
MbiI CCGCTC 1 cut(s) 762
MboI GATC 4 cut(s) 93, 147, 270, 274
MboII GAAGA 4 cut(s) 377, 512, 520, 682
MluCI AATT 3 cut(s) 15, 134, 712
Mly113I GGCGCC 1 cut(s) 467
MlyI GAGTC 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 1 cut(s) 522
MspA1I CMGCKG 2 cut(s) 168, 629
MspI CCGG 2 cut(s) 218, 717
MspR9I CCNGG 2 cut(s) 218, 718
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 541
NarI GGCGCC 1 cut(s) 467
NciI CCSGG 2 cut(s) 218, 718
NcoI CCATGG 2 cut(s) 403, 462
NdeII GATC 4 cut(s) 93, 147, 270, 274
NlaIII CATG 3 cut(s) 407, 466, 801
NlaIV GGNNCC 3 cut(s) 468, 722, 745
PaeR7I CTCGAG 1 cut(s) 638
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 577, 778
PflFI GACNNNGTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 1 cut(s) 62
PluTI GGCGCC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 62
PspEI GGTNACC 1 cut(s) 565
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 468, 722, 745
PspPI GGNCC 2 cut(s) 624, 721
PsyI GACNNNGTC 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 168
RsaI GTAC 1 cut(s) 745
RsaNI GTAC 1 cut(s) 744
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 4 cut(s) 93, 147, 270, 274
Sau96I GGNCC 2 cut(s) 624, 721
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 218, 718
SfoI GGCGCC 1 cut(s) 468
Sfr274I CTCGAG 1 cut(s) 638
SinI GGWCC 2 cut(s) 624, 721
SlaI CTCGAG 1 cut(s) 638
SmlI CTYRAG 2 cut(s) 508, 638
SmoI CTYRAG 2 cut(s) 508, 638
Sse9I AATT 3 cut(s) 15, 134, 712
SsiI CCGC 3 cut(s) 230, 627, 760
SspDI GGCGCC 1 cut(s) 466
StyD4I CCNGG 2 cut(s) 216, 716
StyI CCWWGG 4 cut(s) 129, 203, 403, 462
TaaI ACNGT 1 cut(s) 571
TaqI TCGA 6 cut(s) 66, 273, 279, 357, 598, 639
TasI AATT 3 cut(s) 15, 134, 712
TfiI GAWTC 2 cut(s) 577, 778
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 3 cut(s) 164, 553, 731
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 2 cut(s) 17, 513
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 3 cut(s) 164, 553, 731
Tth111I GACNNNGTC 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 624, 721
XapI RAATTY 2 cut(s) 15, 712
XhoI CTCGAG 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.