Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005980

Physical Location & Seq

Genomic Coordinates Forward (+)

26927343 .. 26928325

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGCGGGGTGGGTATGAATAGTGAGGACGTGGAAGCGAAGTCGAGAGCACAGGCTGCGGAGAAGGACGGCGGCGAGTGCGATTCTTCCGTCGGGACGATGCGGTGGGAGAAGCTGCTGCCGACGATGAACATGCGGGTGTTGCTGGTGGAAGCTGATGACTCCACCAGGCATATTATAGCTGCGCTTCTCAGGAAATGTAGCTACAGAGTTGCTGCTGTAGCTGATGGCTTAAAGGCTTGGGAGATACTGAAGGCACGGCCTCATAACATAGATCGATCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

96

Amino Acids

10.46

Weight (kDa)

6.72

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24470
fragaria_vesca	FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920
malus_domestica	MD01G1228200.v1.1 MD07G1299100.v1.1
prunus_persica	Prupe.2G318900_v2.0.a1
pyrus_communis	pycom01g23650 pycom07g27150 pycom07g27160
rosa_chinensis	RchiOBHm_Chr1g0382871
rosa_laevigata	RLG00000026152
rosa_multiflora	Rmu_sc0002242.1_g000013 Rmu_sc0010366.1_g000006
rosa_roxburghii	Rroxscaffold_4G00277820
rosa_rugosa	Rorug01G0437000
rosa_samantha	Rh1AG462000 Rh1BG419000 Rh1CG432700 Rh1DG451100 Rh4BG143700 Rh4BG143800 Rh4DG139500
rosa_wichuraiana	Rw1G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	6, 59, 72, 103, 136
AcuI	CTGAAG	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	5 cut(s)	115, 155, 182, 204, 224
AluI	AGCT	5 cut(s)	115, 155, 182, 204, 224
Alw21I	GWGCWC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	5 cut(s)	56, 115, 118, 182, 215
AspLEI	GCGC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	5 cut(s)	43, 102, 105, 169, 202
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	85, 275
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	169
BfmI	CTRYAG	2 cut(s)	205, 219
BisI	GCNGC	6 cut(s)	57, 73, 116, 119, 183, 216
BlsI	GCNGC	6 cut(s)	58, 74, 117, 120, 184, 217
Bme1390I	CCNGG	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	90
Bsa29I	ATCGAT	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	205
BseXI	GCAGC	5 cut(s)	43, 102, 105, 169, 202
BshFI	GGCC	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	274, 278
BspACI	CCGC	5 cut(s)	6, 59, 72, 103, 136
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	204
BspDI	ATCGAT	1 cut(s)	277
BssMI	GATC	2 cut(s)	274, 278
Bst2UI	CCWGG	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	2 cut(s)	277, 281
BstMBI	GATC	2 cut(s)	274, 278
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 78, 142, 221
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	2 cut(s)	205, 219
BstV1I	GCAGC	5 cut(s)	43, 102, 105, 169, 202
Bsu15I	ATCGAT	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	262
BsuTUI	ATCGAT	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	31
CfoI	GCGC	1 cut(s)	187
ClaI	ATCGAT	1 cut(s)	277
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	9 cut(s)	56, 115, 155, 182, 204, 224, 231, 239, 262
CviKI_1	RGCY	9 cut(s)	56, 115, 155, 182, 204, 224, 231, 239, 262
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	2 cut(s)	276, 280
DpnII	GATC	2 cut(s)	274, 278
Eco57I	CTGAAG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	136
FaiI	YATR	6 cut(s)	17, 134, 174, 179, 267, 272
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	6 cut(s)	57, 73, 116, 119, 183, 216
Fsp4HI	GCNGC	6 cut(s)	57, 73, 116, 119, 183, 216
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	6 cut(s)	57, 73, 116, 119, 183, 216
HaeIII	GGCC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	83, 161
Hpy188III	TCNNGA	3 cut(s)	45, 94, 193
Hpy99I	CGWCG	2 cut(s)	95, 127
HpyAV	CCTTC	2 cut(s)	58, 247
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 78, 142, 221
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	274, 278
LpnPI	CCDG	5 cut(s)	38, 131, 154, 178, 181
Lsp1109I	GCAGC	5 cut(s)	43, 102, 105, 169, 202
LweI	GCATC	1 cut(s)	90
MaeII	ACGT	1 cut(s)	30
MalI	GATC	2 cut(s)	276, 280
MboI	GATC	2 cut(s)	274, 278
MboII	GAAGA	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	2 cut(s)	19, 273
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	4 cut(s)	56, 78, 142, 221
NdeII	GATC	2 cut(s)	274, 278
NlaIII	CATG	1 cut(s)	136
NspI	RCATGY	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	6 cut(s)	58, 74, 117, 120, 184, 217
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	6 cut(s)	57, 73, 116, 119, 183, 216
Sau3AI	GATC	2 cut(s)	274, 278
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	6 cut(s)	33, 117, 157, 184, 206, 226
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	2 cut(s)	205, 219
SmiMI	CAYNNNNRTG	1 cut(s)	137
SsiI	CCGC	5 cut(s)	6, 59, 72, 103, 136
StyD4I	CCNGG	1 cut(s)	167
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	44, 277
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseI	GCWGC	5 cut(s)	56, 115, 118, 182, 215
TspDTI	ATGAA	2 cut(s)	32, 143
TspGWI	ACGGA	1 cut(s)	79
XceI	RCATGY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.