Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005980

Physical Location & Seq

Genomic Coordinates Forward (+)

65894211 .. 65898751

Gene Structure 4541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG451100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGGAAGTAGATCTGCCATCAATATCTGGATTTGCTCTGCTTACGCTAATCATGGAGCATGAGATCTGCAAAAACATTCCTGTTATAATGATGTCCTCTCAGGATTCGATTAACACAGTTTACAAATGCATGACAAGAGGTGTTTCCGACTATCTTGTTAAGCCGATTAGGAAGAATGAACTGAGAAACCTGTGGCAGCATGTTTGGAGGAGACAAGCTTTAGCCAGAAATATCCCACAAGATGAGAGTGTTGGACAAGAAAAGATTGAAGGTACATCTGATAATGATGCTGCAAGCAATCATTCCAGTGGCTATGTGGCATGTGCTCAGAGGAATAAGGAAAACATTGAAAAAGGGACTGATTCTCAGAGCTCTTGTACAAAGCCAGATTTTGAAGCTGAGAGTGCTCCTGTGGATATGCAGGAATTTTCACAGCAGATACAGGCTAAAAATTTTCTGGATGACTTAAGAATGCAGAAAGATGAAGGGAACACCAATTGTAGTGAAAAGTTGCTTATGCATGAAAATGAATCCAGAGGACCAGCAGTGAATGCCTACAAGGGCAAGTTAGCAGCTCCACTAGGTGAGGTTGCCAAGCCAGGTAGTCATAGGAGGGATGCTAATATGGATAGTGAGGCTTGTGATGATAACGATCTCCTTGTCAACTCTTCAAGAAATGTCACCGACTTCTTTGGGGTATGCAGTAGTTATCCAATTAGCAACCTCAGAAACTCTTCATCAAGTAATAGGCCTAGTACATATGATTCTGCTCCGCCGTTGGATCTTTCTTTGAGAAGATCAGATTCCAGTGGCATTGAGACTCAAGTTACTGAAAAAAGGCATACTCTGGGCCATTCTAACGCCTCAGCATTTTCACGATACATCAACAGACCATTGCAGCCCCAGAATCCATTGACTGGCATAAACGATCAACAAAAGGCATACCAAACTACATCTGAGAAGCCTGCATCCCCTGTTAATATGGATTGTGATACCCCTGCTGCTACTTCAAGTATTCCAAGGAGTGTCATCACTGTAGCTACTGGTCAGTCTAACCAGTCTGAAATTGGAACGTCATGCCCTCAGCAGAGATTATTTCCTCTTCCTGTTCCCGTTAAAGGTGTAAGGTTTAACAACCTTTGCAATGGGTATGGTACTGTACTGCCTCCAACCTTTTGCACACAGTCAAGTCCATCACCAATGCCAAGTTCAGCTGCCCAGCAGGAACCCTCATTTCTAATGAGTACATTTTATCCGACTAATCTTCAAAACCATAAACCAGAGCATGTGTGCGACCCAGCTTATCATAATTCCAAGGTTGCGATGGAACAGACAATGCAGCAGCAGGAACAAAGATTCGATGAGGATCGAGGGCATATCTCTTCAAACAATGATCAGAGTGCAACTAGTAGTTTTTGCAATGGCAATGCAAGTCATCTGAATAGCATGGGGTATGGAAGTGCTTGTGGAAGTAACAACGTTGATCAGGTGGCTATGTTCAGGGCTGCTCCAGAGAGCAAGAATGAAGACAGTGTCTTTAATCACAGTGGAAATAATCGATCCATCCAAAGAGAAGCAGCTCTCAACAAGTTCCGGTTGAAGAGGAAAGATAGATGCTACGAGAAGAAGGTTCGTTACGAGAGCAGAAAGAAGCTTGCAGAGCAGCGTCCAAGAATAAAGGGACAATTTGTTCGTCAAGTGCTTAATGATCCTTCACATATGGAAGCTGATGGCAATGCATATGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

583

Amino Acids

64.78

Weight (kDa)

6.3

Isoelectric Point (pI)

63.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	1 - 63	1.6e-10	Response regulator receiver domain
CCT	PF06203	524 - 566	6.2e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24470
fragaria_vesca	FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920
malus_domestica	MD01G1228200.v1.1 MD07G1299100.v1.1
prunus_persica	Prupe.2G318900_v2.0.a1
pyrus_communis	pycom01g23650 pycom07g27150 pycom07g27160
rosa_chinensis	RchiOBHm_Chr1g0382871
rosa_laevigata	RLG00000026152
rosa_multiflora	Rmu_sc0002242.1_g000013 Rmu_sc0010366.1_g000006
rosa_roxburghii	Rroxscaffold_4G00277820
rosa_rugosa	Rorug01G0437000
rosa_samantha	Rh1AG462000 Rh1BG419000 Rh1CG432700 Rh1DG451100 Rh4BG143700 Rh4BG143800 Rh4DG139500
rosa_wichuraiana	Rw1G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	917
AciI	CCGC	1 cut(s)	773
AclI	AACGTT	1 cut(s)	1479
AclWI	GGATC	4 cut(s)	789, 1374, 1554, 1703
AcsI	RAATTY	2 cut(s)	425, 451
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	6 cut(s)	274, 379, 757, 1156, 1161, 1246
AfiI	CCNNNNNNNGG	2 cut(s)	917, 1118
AflII	CTTAAG	1 cut(s)	466
AgsI	TTSAA	8 cut(s)	269, 350, 395, 672, 1011, 1268, 1386, 1600
AhlI	ACTAGT	1 cut(s)	1406
AjnI	CCWGG	1 cut(s)	598
AjuI	GAANNNNNNNTTGG	2 cut(s)	1192, 1224
AloI	GAACNNNNNNTCC	2 cut(s)	1674, 1706
Alw21I	GWGCWC	3 cut(s)	328, 374, 409
Alw26I	GTCTC	2 cut(s)	205, 812
AlwI	GGATC	4 cut(s)	789, 1374, 1554, 1703
AoxI	GGCC	2 cut(s)	749, 850
ApoI	RAATTY	2 cut(s)	425, 451
ArsI	GACNNNNNNTTYG	2 cut(s)	1674, 1706
Asp700I	GAANNNNTTC	1 cut(s)	733
AspS9I	GGNCC	2 cut(s)	539, 850
AsuHPI	GGTGA	3 cut(s)	596, 673, 1188
AvaII	GGWCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	374
BarI	GAAGNNNNNNTAC	2 cut(s)	1619, 1651
BbsI	GAAGAC	1 cut(s)	1533
Bbv12I	GWGCWC	3 cut(s)	328, 374, 409
BbvCI	CCTCAGC	2 cut(s)	865, 1083
BccI	CCATC	5 cut(s)	25, 1201, 1318, 1571, 1724
BceAI	ACGGC	1 cut(s)	760
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	2 cut(s)	1393, 1483
BcoDI	GTCTC	2 cut(s)	205, 812
BcuI	ACTAGT	1 cut(s)	1406
BfaI	CTAG	3 cut(s)	581, 753, 1407
BfmI	CTRYAG	1 cut(s)	1035
BfrI	CTTAAG	1 cut(s)	466
BglII	AGATCT	2 cut(s)	10, 63
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	1 cut(s)	539
BmgT120I	GGNCC	2 cut(s)	539, 850
BmiI	GGNNCC	1 cut(s)	1227
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	4 cut(s)	277, 607, 977, 1604
BpiI	GAAGAC	1 cut(s)	1533
BpmI	CTGGAG	1 cut(s)	1494
Bpu10I	CCTNAGC	2 cut(s)	865, 1083
BpuEI	CTTGAG	1 cut(s)	807
Bsa29I	ATCGAT	1 cut(s)	1558
BsaBI	GATNNNNATC	2 cut(s)	651, 1365
BsaJI	CCNNGG	2 cut(s)	1019, 1314
BsaWI	WCCGGW	1 cut(s)	1593
Bsc4I	CCNNNNNNNGG	2 cut(s)	917, 1118
Bse1I	ACTGG	5 cut(s)	306, 807, 922, 1048, 1057
Bse3DI	GCAATG	5 cut(s)	893, 1150, 1426, 1432, 1741
Bse8I	GATNNNNATC	2 cut(s)	651, 1365
BseBI	CCWGG	1 cut(s)	600
BseCI	ATCGAT	1 cut(s)	1558
BseDI	CCNNGG	2 cut(s)	1019, 1314
BseGI	GGATG	4 cut(s)	466, 622, 968, 1563
BseJI	GATNNNNATC	2 cut(s)	651, 1365
BseLI	CCNNNNNNNGG	2 cut(s)	917, 1118
BseMI	GCAATG	5 cut(s)	893, 1150, 1426, 1432, 1741
BseMII	CTCAG	9 cut(s)	113, 173, 341, 380, 390, 739, 879, 948, 1097
BseNI	ACTGG	5 cut(s)	306, 807, 922, 1048, 1057
BseRI	GAGGAG	1 cut(s)	223
BseYI	CCCAGC	2 cut(s)	1218, 1297
BshFI	GGCC	2 cut(s)	751, 852
BshVI	ATCGAT	1 cut(s)	1558
BsiHKAI	GWGCWC	3 cut(s)	328, 374, 409
BsiSI	CCGG	1 cut(s)	1594
BslFI	GGGAC	2 cut(s)	370, 1695
BslI	CCNNNNNNNGG	2 cut(s)	917, 1118
BsmAI	GTCTC	2 cut(s)	205, 812
BsmFI	GGGAC	2 cut(s)	370, 1695
BsmI	GAATGC	2 cut(s)	477, 556
BsnI	GGCC	2 cut(s)	751, 852
Bsp1286I	GDGCHC	3 cut(s)	328, 374, 409
Bsp1407I	TGTACA	1 cut(s)	377
BspACI	CCGC	1 cut(s)	773
BspANI	GGCC	2 cut(s)	751, 852
BspCNI	CTCAG	9 cut(s)	112, 174, 340, 379, 391, 738, 878, 949, 1096
BspDI	ATCGAT	1 cut(s)	1558
BspLI	GGNNCC	1 cut(s)	1227
BspPI	GGATC	4 cut(s)	789, 1374, 1554, 1703
BspTI	CTTAAG	1 cut(s)	466
BsrDI	GCAATG	5 cut(s)	893, 1150, 1426, 1432, 1741
BsrGI	TGTACA	1 cut(s)	377
BsrI	ACTGG	5 cut(s)	306, 807, 922, 1048, 1057
BssECI	CCNNGG	2 cut(s)	1019, 1314
BssT1I	CCWWGG	2 cut(s)	1019, 1314
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	6 cut(s)	118, 1036, 1159, 1185, 1532, 1547
Bst6I	CTCTTC	5 cut(s)	673, 739, 1107, 1387, 1595
BstAFI	CTTAAG	1 cut(s)	466
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	295, 966, 1656
BstDEI	CTNAG	9 cut(s)	99, 182, 327, 366, 399, 725, 865, 957, 1083
BstF5I	GGATG	4 cut(s)	466, 622, 968, 1563
BstMAI	GTCTC	2 cut(s)	205, 812
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 551, 1660
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	3 cut(s)	203, 324, 1289
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	1 cut(s)	1035
BstV2I	GAAGAC	1 cut(s)	1533
BstX2I	RGATCY	3 cut(s)	10, 63, 781
BstYI	RGATCY	3 cut(s)	10, 63, 781
Bsu15I	ATCGAT	1 cut(s)	1558
BsuRI	GGCC	2 cut(s)	751, 852
BsuTUI	ATCGAT	1 cut(s)	1558
BtgZI	GCGATG	1 cut(s)	1337
BtsCI	GGATG	4 cut(s)	466, 622, 968, 1563
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	6 cut(s)	313, 552, 814, 1032, 1537, 1552
Cac8I	GCNNGC	3 cut(s)	295, 966, 1656
Cfr13I	GGNCC	2 cut(s)	539, 850
ClaI	ATCGAT	1 cut(s)	1558
CseI	GACGC	1 cut(s)	1655
Csp6I	GTAC	6 cut(s)	273, 378, 756, 1155, 1160, 1245
CviAII	CATG	9 cut(s)	52, 59, 130, 200, 321, 521, 1077, 1286, 1447
CviQI	GTAC	6 cut(s)	273, 378, 756, 1155, 1160, 1245
DdeI	CTNAG	9 cut(s)	99, 182, 327, 366, 399, 725, 865, 957, 1083
DraIII	CACNNNGTG	1 cut(s)	584
Eam1104I	CTCTTC	5 cut(s)	673, 739, 1107, 1387, 1595
EarI	CTCTTC	5 cut(s)	673, 739, 1107, 1387, 1595
EciI	GGCGGA	1 cut(s)	762
Ecl136II	GAGCTC	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	1019, 1314
Eco147I	AGGCCT	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	539
Eco53kI	GAGCTC	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	2 cut(s)	1019, 1314
EcoT22I	ATGCAT	3 cut(s)	131, 522, 1741
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	2 cut(s)	1019, 1314
FaeI	CATG	9 cut(s)	55, 62, 133, 203, 324, 524, 1080, 1289, 1450
FaqI	GGGAC	2 cut(s)	370, 1695
FatI	CATG	9 cut(s)	51, 58, 129, 199, 320, 520, 1076, 1285, 1446
FauNDI	CATATG	3 cut(s)	760, 1719, 1741
FbaI	TGATCA	2 cut(s)	1393, 1483
FokI	GGATG	4 cut(s)	473, 629, 955, 1550
FriOI	GRGCYC	1 cut(s)	374
FspBI	CTAG	3 cut(s)	581, 753, 1407
GsaI	CCCAGC	2 cut(s)	1222, 1301
GsuI	CTGGAG	1 cut(s)	1494
HaeIII	GGCC	2 cut(s)	751, 852
HapII	CCGG	1 cut(s)	1594
HgaI	GACGC	1 cut(s)	1655
Hin1II	CATG	9 cut(s)	55, 62, 133, 203, 324, 524, 1080, 1289, 1450
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HindIII	AAGCTT	2 cut(s)	216, 1652
HinfI	GANTC	8 cut(s)	104, 362, 530, 764, 803, 820, 907, 1356
HpaII	CCGG	1 cut(s)	1594
HphI	GGTGA	3 cut(s)	596, 673, 1188
Hpy166II	GTNNAC	2 cut(s)	121, 664
Hpy188III	TCNNGA	7 cut(s)	27, 101, 458, 534, 672, 876, 1511
Hpy8I	GTNNAC	2 cut(s)	121, 664
HpyAV	CCTTC	4 cut(s)	263, 479, 1621, 1722
HpyCH4III	ACNGT	6 cut(s)	118, 1036, 1159, 1185, 1532, 1547
HpyCH4IV	ACGT	2 cut(s)	1073, 1479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 551, 1660
HpyF3I	CTNAG	9 cut(s)	99, 182, 327, 366, 399, 725, 865, 957, 1083
HpySE526I	ACGT	2 cut(s)	1073, 1479
Hsp92II	CATG	9 cut(s)	55, 62, 133, 203, 324, 524, 1080, 1289, 1450
Ksp22I	TGATCA	2 cut(s)	1393, 1483
LmnI	GCTCC	5 cut(s)	55, 412, 580, 775, 1513
LweI	GCATC	4 cut(s)	277, 607, 977, 1604
MaeI	CTAG	3 cut(s)	581, 753, 1407
MaeII	ACGT	2 cut(s)	1073, 1479
MaeIII	GTNAC	4 cut(s)	679, 826, 1472, 1634
MfeI	CAATTG	1 cut(s)	496
MflI	RGATCY	3 cut(s)	10, 63, 781
MhlI	GDGCHC	3 cut(s)	328, 374, 409
MluCI	AATT	7 cut(s)	425, 451, 496, 714, 1065, 1309, 1685
MlyI	GAGTC	1 cut(s)	814
MmeI	TCCRAC	5 cut(s)	171, 232, 759, 1193, 1280
Mph1103I	ATGCAT	3 cut(s)	131, 522, 1741
MroXI	GAANNNNTTC	1 cut(s)	733
MseI	TTAA	8 cut(s)	111, 159, 467, 978, 1116, 1131, 1539, 1704
MslI	CAYNNNNRTG	2 cut(s)	306, 525
MspA1I	CMGCKG	1 cut(s)	1214
MspCI	CTTAAG	1 cut(s)	466
MspI	CCGG	1 cut(s)	1594
MspR9I	CCNGG	1 cut(s)	600
MunI	CAATTG	1 cut(s)	496
Mva1269I	GAATGC	2 cut(s)	477, 556
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	3 cut(s)	404, 551, 1660
NdeI	CATATG	3 cut(s)	760, 1719, 1741
NlaIII	CATG	9 cut(s)	55, 62, 133, 203, 324, 524, 1080, 1289, 1450
NlaIV	GGNNCC	1 cut(s)	1227
NmuCI	GTSAC	1 cut(s)	679
NsiI	ATGCAT	3 cut(s)	131, 522, 1741
NspI	RCATGY	3 cut(s)	203, 324, 1289
PceI	AGGCCT	1 cut(s)	751
PctI	GAATGC	2 cut(s)	477, 556
PdmI	GAANNNNTTC	1 cut(s)	733
PfeI	GAWTC	7 cut(s)	104, 362, 530, 764, 803, 907, 1356
PflFI	GACNNNGTC	1 cut(s)	1532
PflMI	CCANNNNNTGG	1 cut(s)	917
PleI	GAGTC	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	814
PsiI	TTATAA	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	374
Psp1406I	AACGTT	1 cut(s)	1479
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	2 cut(s)	1218, 1297
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	1227
PspPI	GGNCC	2 cut(s)	539, 850
PsuI	RGATCY	3 cut(s)	10, 63, 781
PsyI	GACNNNGTC	1 cut(s)	1532
PvuII	CAGCTG	1 cut(s)	1214
RsaI	GTAC	6 cut(s)	274, 379, 757, 1156, 1161, 1246
RsaNI	GTAC	6 cut(s)	273, 378, 756, 1155, 1160, 1245
RseI	CAYNNNNRTG	2 cut(s)	306, 525
SacI	GAGCTC	1 cut(s)	374
SaqAI	TTAA	8 cut(s)	111, 159, 467, 978, 1116, 1131, 1539, 1704
Sau96I	GGNCC	2 cut(s)	539, 850
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	3 cut(s)	328, 374, 409
SfaNI	GCATC	4 cut(s)	277, 607, 977, 1604
SfcI	CTRYAG	1 cut(s)	1035
SinI	GGWCC	1 cut(s)	539
SmiMI	CAYNNNNRTG	2 cut(s)	306, 525
SmlI	CTYRAG	2 cut(s)	466, 822
SmoI	CTYRAG	2 cut(s)	466, 822
SpeI	ACTAGT	1 cut(s)	1406
Sse9I	AATT	7 cut(s)	425, 451, 496, 714, 1065, 1309, 1685
SseBI	AGGCCT	1 cut(s)	751
SsiI	CCGC	1 cut(s)	773
SspMI	CTAG	3 cut(s)	581, 753, 1407
SstI	GAGCTC	1 cut(s)	374
StuI	AGGCCT	1 cut(s)	751
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	2 cut(s)	1019, 1314
TaaI	ACNGT	6 cut(s)	118, 1036, 1159, 1185, 1532, 1547
TaiI	ACGT	2 cut(s)	1076, 1482
TaqI	TCGA	4 cut(s)	107, 1359, 1369, 1558
TasI	AATT	7 cut(s)	425, 451, 496, 714, 1065, 1309, 1685
TatI	WGTACW	4 cut(s)	377, 755, 1159, 1244
TfiI	GAWTC	7 cut(s)	104, 362, 530, 764, 803, 907, 1356
Tru1I	TTAA	8 cut(s)	111, 159, 467, 978, 1116, 1131, 1539, 1704
Tru9I	TTAA	8 cut(s)	111, 159, 467, 978, 1116, 1131, 1539, 1704
TscAI	CASTG	6 cut(s)	313, 552, 814, 1039, 1537, 1552
TseFI	GTSAC	1 cut(s)	679
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	6 cut(s)	192, 498, 537, 543, 726, 1539
TspRI	CASTG	6 cut(s)	313, 552, 814, 1039, 1537, 1552
Tth111I	GACNNNGTC	1 cut(s)	1532
Van91I	CCANNNNNTGG	1 cut(s)	917
Vha464I	CTTAAG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	2 cut(s)	425, 451
XceI	RCATGY	3 cut(s)	203, 324, 1289
XcmI	CCANNNNNNNNNTGG	3 cut(s)	313, 1064, 1321
XmnI	GAANNNNTTC	1 cut(s)	733
XspI	CTAG	3 cut(s)	581, 753, 1407
Zsp2I	ATGCAT	3 cut(s)	131, 522, 1741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.