Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005980

Physical Location & Seq

Genomic Coordinates Reverse (-)

865484 .. 869191

Gene Structure 3708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026152

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2049 bp

ATGGGTGAGGTTGTGGTGAGTAGTGAGGAAATGAGAACAGAGAGTGAGAAGCAGAGAAGTACAGAGATGAAGAACAATGGAGGTGGCGGTGACTCATCAAGTGGGGTTGTGATGAGGTGGGAGAAGCTCTTGCCTGGAATGAACATGAGGGTCTTGTTGGTTGAGGCTGATGACTCCACAAGGCATATTATAGCTGCTTTGCTCAGGAAATGTAGCTATAGAGTTGCTGCTGTACCTGATGGCTTAAAGGCATGGGAAATACTGAAGGCAAGGTCCGATAAGATAGACCTCATACTGATGGAAGTAGATCTGCCATCAATATCTGGATTTGCTCTGCTTACGCTAATCATGGAGCATGAGATCTGCAAAAACATTCCTGTTATAATGATGTCCTCTCAGGATTCGATTAACACAGTTTACAAATGCATGACAAGAGGTGTTTCCGACTATCTTGTTAAGCCAATTAGGAAGAATGAACTGAGAAACCTGTGGCAGCATGTTTGGAGGAGACAAGCTTTAGCCAGAAATATCCCACAAGATGAGAGTGTTGGACAAGAGAAGATTGAAGGTACATCTGATAACGATGCTGCAAGCAATCATTCCAGTGGCTATGTGGCATGTGCTCAGAGGAATAAGGAAAACATTGAAAAAGGGACTGATTCTCAGAGCTCTTGTACAAAGCCAGATTTTGAAGCTGAGAGTGCTCCTGTGGATATGCAGGAATTTTCACAGCAGATACAGGCTAAAAATTTTCTGGATGACTTAAGAATGCAGAAAGATGAAGGGAACACCAATTGTAGTGAAAAGTTGCTTATGCATGAAAATGAAGCCAGAGGACCAGCAGTGAATGCCTACAAGGACAAGTTAGCAGCTCCACTAGGTGAGGTTGCCAAGCCAGGAAGTCATAGGAGGGATGCTAATATGGATAGTGAGGCTTGTGATGATAACGATCTCCTTGTCAACTCTTCAAGAAATGTCACCGACTTCTTTGGAGTATGCAGTAGTTATCCAATTAGCAACCTCAGAAACTCTTCATCAAGTAATAGGCCTGGTACATATGATTCTACTCCTCAGTTGGATCTTTCTTTGAGAAGATCAAATTCCAGTGGCATTGAGACTCAAGTTGCTGAAAAAAGGCATACTCTGGGCCATTCTAACGCCTCAGCATTTTCACGATACATCAACAGACCATTGCAGCCCCAGAATTCATTGACTGGCATAAATGATCAACAAAAGGCATACCAAACTACATCTGAGAAGCCTGCATCCCCTGTTAATATGGATTGTGATACTCCTGCTGCTACTTCAAGTATTCCAAGGAGTGTCATCACTTTAGCTACTGGTCAGTCTAACCAGTCTGAAATTGGAACGTCATGCCCTCAGCAGAGATTATTTCCTCTTCCTGTTCCCGTTAAAGGTGTAAGGTTTAACAACCTTTGCAATGGGTATGGTACTGTACTGCCTCCAACCTTTTGCACACAGTCAAGTCCAGCACCAATGCCAAGTTCAGCTGCCCAGCAGGAACCCTCATTTCTAATGAGTACATTTTATCCGACTAATGTTCAAAACCATAAACCAGAGCATGTGTACGACCCAGCTTTTCATAATTCCAAGGTTGCGATGGAACAGACAATGCAGCAGCAGGAGCAAAGATTCGATGAGGATCGAGGACATGTCTCTTCAAACAATGATCAGAGTGCAACTAGTAGTTTTTGCAATGGCAATGCAAGTCATCTGAATAGCATGGGGTATGGAAGTGCTTGTGGAAGTAACAACGTTGATCAGGTGGCTATGTTCAGGGCTGCTCCAGAGAGCAAGAATGAAGACAGTTTCTTTAATCACAGTGGAAATAATCGATCGATCCAAAGAGAAGCAGCTCTCAACAAGTTCCGGTTGAAGAGGAAAGATAGATGCTATGAGAAGAAGGTTCGTTACGAGAGCAGAAAGAAGCTTGCAGAGCAGCGTCCAAGAATAAAGGGACAATTTGTTCGTCAAGTCCTTAATGATCCTTCACATATGGAAGCTGATGGCAATGCATATGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

683

Amino Acids

75.81

Weight (kDa)

6.35

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	51 - 162	4.2e-22	Response regulator receiver domain
CCT	PF06203	623 - 665	7.6e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24470
fragaria_vesca	FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920
malus_domestica	MD01G1228200.v1.1 MD07G1299100.v1.1
prunus_persica	Prupe.2G318900_v2.0.a1
pyrus_communis	pycom01g23650 pycom07g27150 pycom07g27160
rosa_chinensis	RchiOBHm_Chr1g0382871
rosa_laevigata	RLG00000026152
rosa_multiflora	Rmu_sc0002242.1_g000013 Rmu_sc0010366.1_g000006
rosa_roxburghii	Rroxscaffold_4G00277820
rosa_rugosa	Rorug01G0437000
rosa_samantha	Rh1AG462000 Rh1BG419000 Rh1CG432700 Rh1DG451100 Rh4BG143700 Rh4BG143800 Rh4DG139500
rosa_wichuraiana	Rw1G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
AciI	CCGC	1 cut(s)	87
AclI	AACGTT	1 cut(s)	1776
AclWI	GGATC	4 cut(s)	1086, 1671, 1855, 2000
AcsI	RAATTY	4 cut(s)	722, 748, 1099, 1204
AcuI	CTGAAG	1 cut(s)	284
AdeI	CACNNNGTG	1 cut(s)	881
AfaI	GTAC	9 cut(s)	61, 234, 571, 676, 1054, 1453, 1458, 1543, 1589
AfiI	CCNNNNNNNGG	1 cut(s)	1415
AflII	CTTAAG	1 cut(s)	763
AflIII	ACRYGT	1 cut(s)	1672
AgsI	TTSAA	8 cut(s)	566, 647, 692, 969, 1308, 1565, 1683, 1897
AhlI	ACTAGT	1 cut(s)	1703
AjnI	CCWGG	3 cut(s)	133, 895, 1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	1489, 1521
AloI	GAACNNNNNNTCC	2 cut(s)	1971, 2003
Alw21I	GWGCWC	3 cut(s)	625, 671, 706
Alw26I	GTCTC	3 cut(s)	502, 1109, 1681
AlwI	GGATC	4 cut(s)	1086, 1671, 1855, 2000
AoxI	GGCC	2 cut(s)	1046, 1147
ApoI	RAATTY	4 cut(s)	722, 748, 1099, 1204
ArsI	GACNNNNNNTTYG	2 cut(s)	1971, 2003
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspS9I	GGNCC	3 cut(s)	273, 836, 1147
AsuHPI	GGTGA	5 cut(s)	17, 28, 101, 893, 970
AvaII	GGWCC	2 cut(s)	273, 836
BanII	GRGCYC	1 cut(s)	671
BarI	GAAGNNNNNNTAC	2 cut(s)	1916, 1948
BbsI	GAAGAC	1 cut(s)	1830
Bbv12I	GWGCWC	3 cut(s)	625, 671, 706
BbvCI	CCTCAGC	2 cut(s)	1162, 1380
BccI	CCATC	5 cut(s)	233, 292, 322, 1615, 2021
BciT130I	CCWGG	3 cut(s)	135, 897, 1050
BclI	TGATCA	3 cut(s)	1225, 1690, 1780
BcoDI	GTCTC	3 cut(s)	502, 1109, 1681
BcuI	ACTAGT	1 cut(s)	1703
BfaI	CTAG	2 cut(s)	878, 1704
BfmI	CTRYAG	1 cut(s)	217
BfrI	CTTAAG	1 cut(s)	763
BglII	AGATCT	2 cut(s)	307, 360
Bme1390I	CCNGG	3 cut(s)	135, 897, 1050
Bme18I	GGWCC	2 cut(s)	273, 836
BmgT120I	GGNCC	3 cut(s)	273, 836, 1147
BmiI	GGNNCC	1 cut(s)	1524
BmrFI	CCNGG	3 cut(s)	135, 897, 1050
BmsI	GCATC	4 cut(s)	574, 904, 1274, 1901
BpiI	GAAGAC	1 cut(s)	1830
BpmI	CTGGAG	1 cut(s)	1791
Bpu10I	CCTNAGC	3 cut(s)	203, 1162, 1380
BpuEI	CTTGAG	1 cut(s)	1104
Bsa29I	ATCGAT	2 cut(s)	1855, 1859
BsaBI	GATNNNNATC	2 cut(s)	948, 1662
BsaJI	CCNNGG	2 cut(s)	1316, 1611
BsaWI	WCCGGW	1 cut(s)	1890
Bsc4I	CCNNNNNNNGG	1 cut(s)	1415
Bse1I	ACTGG	5 cut(s)	603, 1104, 1219, 1345, 1354
Bse3DI	GCAATG	5 cut(s)	1190, 1447, 1723, 1729, 2038
Bse8I	GATNNNNATC	2 cut(s)	948, 1662
BseBI	CCWGG	3 cut(s)	135, 897, 1050
BseCI	ATCGAT	2 cut(s)	1855, 1859
BseDI	CCNNGG	2 cut(s)	1316, 1611
BseGI	GGATG	3 cut(s)	763, 919, 1265
BseJI	GATNNNNATC	2 cut(s)	948, 1662
BseLI	CCNNNNNNNGG	1 cut(s)	1415
BseMI	GCAATG	5 cut(s)	1190, 1447, 1723, 1729, 2038
BseNI	ACTGG	5 cut(s)	603, 1104, 1219, 1345, 1354
BseRI	GAGGAG	2 cut(s)	520, 1059
BseYI	CCCAGC	2 cut(s)	1515, 1594
Bsh1285I	CGRYCG	1 cut(s)	1859
BshFI	GGCC	2 cut(s)	1048, 1149
BshVI	ATCGAT	2 cut(s)	1855, 1859
BsiEI	CGRYCG	1 cut(s)	1859
BsiHKAI	GWGCWC	3 cut(s)	625, 671, 706
BsiSI	CCGG	1 cut(s)	1891
BslFI	GGGAC	2 cut(s)	667, 1992
BslI	CCNNNNNNNGG	1 cut(s)	1415
BsmAI	GTCTC	3 cut(s)	502, 1109, 1681
BsmFI	GGGAC	2 cut(s)	667, 1992
BsmI	GAATGC	2 cut(s)	774, 853
BsnI	GGCC	2 cut(s)	1048, 1149
Bsp1286I	GDGCHC	3 cut(s)	625, 671, 706
Bsp1407I	TGTACA	1 cut(s)	674
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	2 cut(s)	1048, 1149
BspDI	ATCGAT	2 cut(s)	1855, 1859
BspLI	GGNNCC	1 cut(s)	1524
BspPI	GGATC	4 cut(s)	1086, 1671, 1855, 2000
BspTI	CTTAAG	1 cut(s)	763
BsrDI	GCAATG	5 cut(s)	1190, 1447, 1723, 1729, 2038
BsrGI	TGTACA	1 cut(s)	674
BsrI	ACTGG	5 cut(s)	603, 1104, 1219, 1345, 1354
BssECI	CCNNGG	2 cut(s)	1316, 1611
BssT1I	CCWWGG	2 cut(s)	1316, 1611
Bst2UI	CCWGG	3 cut(s)	135, 897, 1050
Bst4CI	ACNGT	5 cut(s)	415, 1456, 1482, 1829, 1844
Bst6I	CTCTTC	5 cut(s)	970, 1036, 1404, 1684, 1892
BstAFI	CTTAAG	1 cut(s)	763
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstAUI	TGTACA	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	592, 1263, 1953
BstF5I	GGATG	3 cut(s)	763, 919, 1265
BstMAI	GTCTC	3 cut(s)	502, 1109, 1681
BstMCI	CGRYCG	1 cut(s)	1859
BstMWI	GCNNNNNNNGC	4 cut(s)	701, 848, 1645, 1957
BstNI	CCWGG	3 cut(s)	135, 897, 1050
BstNSI	RCATGY	4 cut(s)	500, 621, 1586, 1676
BstSCI	CCNGG	3 cut(s)	133, 895, 1048
BstSFI	CTRYAG	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	1830
BstX2I	RGATCY	3 cut(s)	307, 360, 1078
BstYI	RGATCY	3 cut(s)	307, 360, 1078
Bsu15I	ATCGAT	2 cut(s)	1855, 1859
BsuRI	GGCC	2 cut(s)	1048, 1149
BsuTUI	ATCGAT	2 cut(s)	1855, 1859
BtgZI	GCGATG	1 cut(s)	1634
BtsCI	GGATG	3 cut(s)	763, 919, 1265
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	4 cut(s)	610, 849, 1111, 1849
Cac8I	GCNNGC	3 cut(s)	592, 1263, 1953
Cfr13I	GGNCC	3 cut(s)	273, 836, 1147
ClaI	ATCGAT	2 cut(s)	1855, 1859
CseI	GACGC	1 cut(s)	1952
Csp6I	GTAC	9 cut(s)	60, 233, 570, 675, 1053, 1452, 1457, 1542, 1588
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviQI	GTAC	9 cut(s)	60, 233, 570, 675, 1053, 1452, 1457, 1542, 1588
DraIII	CACNNNGTG	1 cut(s)	881
Eam1104I	CTCTTC	5 cut(s)	970, 1036, 1404, 1684, 1892
EarI	CTCTTC	5 cut(s)	970, 1036, 1404, 1684, 1892
Ecl136II	GAGCTC	1 cut(s)	669
Eco130I	CCWWGG	2 cut(s)	1316, 1611
Eco147I	AGGCCT	1 cut(s)	1048
Eco24I	GRGCYC	1 cut(s)	671
Eco47I	GGWCC	2 cut(s)	273, 836
Eco53kI	GAGCTC	1 cut(s)	669
Eco57I	CTGAAG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	669
EcoRI	GAATTC	1 cut(s)	1204
EcoRII	CCWGG	3 cut(s)	133, 895, 1048
EcoT14I	CCWWGG	2 cut(s)	1316, 1611
EcoT22I	ATGCAT	3 cut(s)	428, 819, 2038
EcoT38I	GRGCYC	1 cut(s)	671
ErhI	CCWWGG	2 cut(s)	1316, 1611
FaqI	GGGAC	2 cut(s)	667, 1992
FauNDI	CATATG	3 cut(s)	1057, 2016, 2038
FbaI	TGATCA	3 cut(s)	1225, 1690, 1780
FokI	GGATG	3 cut(s)	770, 926, 1252
FriOI	GRGCYC	1 cut(s)	671
FspBI	CTAG	2 cut(s)	878, 1704
GsaI	CCCAGC	2 cut(s)	1519, 1598
GsuI	CTGGAG	1 cut(s)	1791
HaeIII	GGCC	2 cut(s)	1048, 1149
HapII	CCGG	1 cut(s)	1891
HgaI	GACGC	1 cut(s)	1952
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HindIII	AAGCTT	2 cut(s)	513, 1949
HinfI	GANTC	7 cut(s)	92, 173, 401, 659, 1061, 1117, 1653
HpaII	CCGG	1 cut(s)	1891
HphI	GGTGA	5 cut(s)	17, 28, 101, 893, 970
Hpy166II	GTNNAC	3 cut(s)	418, 961, 1588
Hpy188III	TCNNGA	7 cut(s)	205, 324, 398, 755, 969, 1173, 1808
Hpy8I	GTNNAC	3 cut(s)	418, 961, 1588
HpyAV	CCTTC	5 cut(s)	259, 560, 776, 1918, 2019
HpyCH4III	ACNGT	5 cut(s)	415, 1456, 1482, 1829, 1844
HpyCH4IV	ACGT	2 cut(s)	1370, 1776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	701, 848, 1645, 1957
HpySE526I	ACGT	2 cut(s)	1370, 1776
Ksp22I	TGATCA	3 cut(s)	1225, 1690, 1780
LmnI	GCTCC	5 cut(s)	352, 709, 877, 1645, 1810
LweI	GCATC	4 cut(s)	574, 904, 1274, 1901
MaeI	CTAG	2 cut(s)	878, 1704
MaeII	ACGT	2 cut(s)	1370, 1776
MaeIII	GTNAC	4 cut(s)	89, 976, 1769, 1931
MfeI	CAATTG	1 cut(s)	793
MflI	RGATCY	3 cut(s)	307, 360, 1078
MhlI	GDGCHC	3 cut(s)	625, 671, 706
MlyI	GAGTC	3 cut(s)	86, 167, 1111
MmeI	TCCRAC	5 cut(s)	468, 529, 1056, 1490, 1577
Mph1103I	ATGCAT	3 cut(s)	428, 819, 2038
MroXI	GAANNNNTTC	1 cut(s)	1030
MslI	CAYNNNNRTG	3 cut(s)	296, 603, 822
MspA1I	CMGCKG	1 cut(s)	1511
MspCI	CTTAAG	1 cut(s)	763
MspI	CCGG	1 cut(s)	1891
MspR9I	CCNGG	3 cut(s)	135, 897, 1050
MunI	CAATTG	1 cut(s)	793
Mva1269I	GAATGC	2 cut(s)	774, 853
MvaI	CCWGG	3 cut(s)	135, 897, 1050
MwoI	GCNNNNNNNGC	4 cut(s)	701, 848, 1645, 1957
NdeI	CATATG	3 cut(s)	1057, 2016, 2038
NlaIV	GGNNCC	1 cut(s)	1524
NmuCI	GTSAC	2 cut(s)	89, 976
NsiI	ATGCAT	3 cut(s)	428, 819, 2038
NspI	RCATGY	4 cut(s)	500, 621, 1586, 1676
PceI	AGGCCT	1 cut(s)	1048
PciI	ACATGT	1 cut(s)	1672
PctI	GAATGC	2 cut(s)	774, 853
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	4 cut(s)	401, 659, 1061, 1653
Ple19I	CGATCG	1 cut(s)	1859
PleI	GAGTC	3 cut(s)	86, 167, 1111
PpsI	GAGTC	3 cut(s)	86, 167, 1111
PscI	ACATGT	1 cut(s)	1672
PsiI	TTATAA	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	671
Psp1406I	AACGTT	1 cut(s)	1776
Psp6I	CCWGG	3 cut(s)	133, 895, 1048
PspFI	CCCAGC	2 cut(s)	1515, 1594
PspGI	CCWGG	3 cut(s)	133, 895, 1048
PspN4I	GGNNCC	1 cut(s)	1524
PspPI	GGNCC	3 cut(s)	273, 836, 1147
PsuI	RGATCY	3 cut(s)	307, 360, 1078
PvuI	CGATCG	1 cut(s)	1859
PvuII	CAGCTG	1 cut(s)	1511
RsaI	GTAC	9 cut(s)	61, 234, 571, 676, 1054, 1453, 1458, 1543, 1589
RsaNI	GTAC	9 cut(s)	60, 233, 570, 675, 1053, 1452, 1457, 1542, 1588
RseI	CAYNNNNRTG	3 cut(s)	296, 603, 822
SacI	GAGCTC	1 cut(s)	671
Sau96I	GGNCC	3 cut(s)	273, 836, 1147
SchI	GAGTC	3 cut(s)	86, 167, 1111
ScrFI	CCNGG	3 cut(s)	135, 897, 1050
SduI	GDGCHC	3 cut(s)	625, 671, 706
SfaNI	GCATC	4 cut(s)	574, 904, 1274, 1901
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	2 cut(s)	273, 836
SmiMI	CAYNNNNRTG	3 cut(s)	296, 603, 822
SmlI	CTYRAG	2 cut(s)	763, 1119
SmoI	CTYRAG	2 cut(s)	763, 1119
SpeI	ACTAGT	1 cut(s)	1703
SseBI	AGGCCT	1 cut(s)	1048
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	2 cut(s)	878, 1704
SstI	GAGCTC	1 cut(s)	671
StuI	AGGCCT	1 cut(s)	1048
StyD4I	CCNGG	3 cut(s)	133, 895, 1048
StyI	CCWWGG	2 cut(s)	1316, 1611
TaaI	ACNGT	5 cut(s)	415, 1456, 1482, 1829, 1844
TaiI	ACGT	2 cut(s)	1373, 1779
TaqI	TCGA	5 cut(s)	404, 1656, 1666, 1855, 1859
TatI	WGTACW	4 cut(s)	59, 674, 1456, 1541
TfiI	GAWTC	4 cut(s)	401, 659, 1061, 1653
TscAI	CASTG	4 cut(s)	610, 849, 1111, 1849
TseFI	GTSAC	2 cut(s)	89, 976
Tsp45I	GTSAC	2 cut(s)	89, 976
TspRI	CASTG	4 cut(s)	610, 849, 1111, 1849
Vha464I	CTTAAG	1 cut(s)	763
VpaK11BI	GGWCC	2 cut(s)	273, 836
XapI	RAATTY	4 cut(s)	722, 748, 1099, 1204
XceI	RCATGY	4 cut(s)	500, 621, 1586, 1676
XcmI	CCANNNNNNNNNTGG	3 cut(s)	610, 1361, 1618
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	2 cut(s)	878, 1704
Zsp2I	ATGCAT	3 cut(s)	428, 819, 2038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.