Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005980

Physical Location & Seq

Genomic Coordinates Forward (+)

25549077 .. 25549867

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG143700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCAGGAGATTTCGCAGCAGATACAGGCTAAAAATTTTCTGGATGACTTGAGAATGCAGAAAGATGAAGTGAACACCAATTGTAGTGAAAAGTTGCTTATGCATGAAAATGAAGCCAGAGCACCAGCAGTGAATGCCTACAAGGACAACTTAGCAGCTCCACTAGGTGAGGTTGCCAAGCCAGAAAGTCATAGGAGAGATGCTAATATGGATAGTGAGGCTTGTGATGAGAACGATCTCCTTGTCAACTCTTCAGTAAATGTCACCGACTTCTTTGGAGTATGCAGTAGTTATCCAATTAGCAACCACAGAAACTCTACACCAAGTAATAGGCCTAGTACATATGATTCTGCTCCGCAGTTGGATCTTTCTTTGAGAAGATCAGATTCCAGTGGCTTTGAGACTCAAGTTACTGAAAAAAGGCATACCCTTGGCCATTCTAACGCCTCAGCCTTTTCAGGATACACCAACATGACCATTGCAGCCCCAGAATCCATTGACTGGCATAAACGATCAACAAAAGGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

176

Amino Acids

19.56

Weight (kDa)

5.32

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24470
fragaria_vesca	FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920
malus_domestica	MD01G1228200.v1.1 MD07G1299100.v1.1
prunus_persica	Prupe.2G318900_v2.0.a1
pyrus_communis	pycom01g23650 pycom07g27150 pycom07g27160
rosa_chinensis	RchiOBHm_Chr1g0382871
rosa_laevigata	RLG00000026152
rosa_multiflora	Rmu_sc0002242.1_g000013 Rmu_sc0010366.1_g000006
rosa_roxburghii	Rroxscaffold_4G00277820
rosa_rugosa	Rorug01G0437000
rosa_samantha	Rh1AG462000 Rh1BG419000 Rh1CG432700 Rh1DG451100 Rh4BG143700 Rh4BG143800 Rh4DG139500
rosa_wichuraiana	Rw1G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	501
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	237
AdeI	CACNNNGTG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	501
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	2 cut(s)	332, 433
ApeKI	GCWGC	3 cut(s)	16, 155, 482
ApoI	RAATTY	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	179, 256
BalI	TGGCCA	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	124
BbvCI	CCTCAGC	1 cut(s)	448
BbvI	GCAGC	3 cut(s)	28, 167, 494
BciVI	GTATCC	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	164, 336
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	17, 156, 483
BlsI	GCNGC	3 cut(s)	18, 157, 484
BmsI	GCATC	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	448
BpuEI	CTTGAG	2 cut(s)	70, 390
BsaJI	CCNNGG	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse1I	ACTGG	2 cut(s)	390, 506
Bse3DI	GCAATG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	390, 506
BseXI	GCAGC	3 cut(s)	28, 167, 494
BshFI	GGCC	2 cut(s)	334, 435
BsiHKAI	GWGCWC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	2 cut(s)	60, 139
BsnI	GGCC	2 cut(s)	334, 435
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	235, 364, 380, 512
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	2 cut(s)	334, 435
BspCNI	CTCAG	1 cut(s)	461
BspPI	GGATC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	390, 506
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	4 cut(s)	235, 364, 380, 512
BssT1I	CCWWGG	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	256
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	151, 448
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	4 cut(s)	238, 367, 383, 515
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	235, 364, 380, 512
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	28, 167, 494
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	334, 435
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 397
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	2 cut(s)	104, 472
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	2 cut(s)	151, 448
DpnI	GATC	4 cut(s)	237, 366, 382, 514
DpnII	GATC	4 cut(s)	235, 364, 380, 512
DraIII	CACNNNGTG	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	2 cut(s)	107, 475
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	2 cut(s)	103, 471
FauNDI	CATATG	2 cut(s)	343, 527
Fnu4HI	GCNGC	3 cut(s)	17, 156, 483
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	3 cut(s)	17, 156, 483
FspBI	CTAG	2 cut(s)	164, 336
GluI	GCNGC	3 cut(s)	17, 156, 483
HaeIII	GGCC	2 cut(s)	334, 435
Hin1II	CATG	2 cut(s)	107, 475
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	4 cut(s)	347, 386, 403, 491
HphI	GGTGA	2 cut(s)	179, 256
Hpy166II	GTNNAC	2 cut(s)	73, 247
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	2 cut(s)	41, 459
Hpy8I	GTNNAC	2 cut(s)	73, 247
HpyCH4V	TGCA	5 cut(s)	4, 58, 103, 285, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	151, 448
Hsp92II	CATG	2 cut(s)	107, 475
Kzo9I	GATC	4 cut(s)	235, 364, 380, 512
LmnI	GCTCC	2 cut(s)	163, 358
LpnPI	CCDG	9 cut(s)	11, 26, 130, 138, 195, 403, 444, 487, 501
Lsp1109I	GCAGC	3 cut(s)	28, 167, 494
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	164, 336
MaeIII	GTNAC	2 cut(s)	262, 409
MalI	GATC	4 cut(s)	237, 366, 382, 514
MboI	GATC	4 cut(s)	235, 364, 380, 512
MboII	GAAGA	2 cut(s)	243, 390
MfeI	CAATTG	1 cut(s)	79
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	3 cut(s)	34, 79, 297
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	3 cut(s)	163, 211, 457
Mox20I	TGGCCA	1 cut(s)	435
Mph1103I	ATGCAT	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	435
MslI	CAYNNNNRTG	2 cut(s)	108, 470
Msp20I	TGGCCA	1 cut(s)	435
MunI	CAATTG	1 cut(s)	79
Mva1269I	GAATGC	2 cut(s)	60, 139
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeI	CATATG	2 cut(s)	343, 527
NdeII	GATC	4 cut(s)	235, 364, 380, 512
NlaIII	CATG	2 cut(s)	107, 475
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	334
PctI	GAATGC	2 cut(s)	60, 139
PfeI	GAWTC	3 cut(s)	347, 386, 491
PflMI	CCANNNNNTGG	1 cut(s)	501
PkrI	GCNGC	3 cut(s)	18, 157, 484
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	2 cut(s)	108, 470
SatI	GCNGC	3 cut(s)	17, 156, 483
Sau3AI	GATC	4 cut(s)	235, 364, 380, 512
SchI	GAGTC	1 cut(s)	397
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	3 cut(s)	160, 169, 174
SfaNI	GCATC	1 cut(s)	190
SmiMI	CAYNNNNRTG	2 cut(s)	108, 470
SmlI	CTYRAG	2 cut(s)	49, 405
SmoI	CTYRAG	2 cut(s)	49, 405
Sse9I	AATT	3 cut(s)	34, 79, 297
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	2 cut(s)	164, 336
StuI	AGGCCT	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	430
TasI	AATT	3 cut(s)	34, 79, 297
TatI	WGTACW	1 cut(s)	338
TfiI	GAWTC	3 cut(s)	347, 386, 491
TscAI	CASTG	2 cut(s)	135, 397
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	16, 155, 482
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	81, 120, 126
TspRI	CASTG	2 cut(s)	135, 397
Van91I	CCANNNNNTGG	1 cut(s)	501
XapI	RAATTY	1 cut(s)	34
XspI	CTAG	2 cut(s)	164, 336
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.