Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005980

Physical Location & Seq

Genomic Coordinates Forward (+)

25569012 .. 25570516

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG143800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCCTAACTTAAAGAGCTCTTGTACAAAGCCAGATTTTGAAGCTGAGAGTGCTCCTGTGGATATGCAGGAGATTTCGCAGCAGATAAAGGCTAAAAAACTTCTGGATGACTTAAGAATGCAGAAAGATGAAGGGAACACCAATTGTAGTGAAAAGTTGCTTATGCATGAAAATGAAGCCAGAGGAGCAGCAGTGAATGCCTTCGAGGACAACTTAGCAGCTCCACTGGGTGAGGATGCCAAGGCAGAAAGTCATAGGAGAGATGCTAATATGGATAGTGAGGCTTGTGATGATAACGATCTCCTTGTCAACTCTTCAGCTACTGACTTCTTTGGAGTATGCAGTAGTTATCCAATTAGCAACCACAGAAACTCTTCATCAAGTAATAGGCCTAGTACATATGATTCTGCTCCGCAGTTGGATCTTTCTTTGAGAAGATCAGATTCCAGTGGCTTTGGGACTCAAGTTACTGAAAAAAGGCATACCCTTGGCCATTCTAACGCCACAGCCTTTTCACGATACACCAACAGACCATTGCAGCCCCAGAATCCATTGACTGGCATAAACGATCAACAAAAGGCATATGAAACTACGTCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

200

Amino Acids

22.03

Weight (kDa)

4.97

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24470
fragaria_vesca	FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920
malus_domestica	MD01G1228200.v1.1 MD07G1299100.v1.1
prunus_persica	Prupe.2G318900_v2.0.a1
pyrus_communis	pycom01g23650 pycom07g27150 pycom07g27160
rosa_chinensis	RchiOBHm_Chr1g0382871
rosa_laevigata	RLG00000026152
rosa_multiflora	Rmu_sc0002242.1_g000013 Rmu_sc0010366.1_g000006
rosa_roxburghii	Rroxscaffold_4G00277820
rosa_rugosa	Rorug01G0437000
rosa_samantha	Rh1AG462000 Rh1BG419000 Rh1CG432700 Rh1DG451100 Rh4BG143700 Rh4BG143800 Rh4DG139500
rosa_wichuraiana	Rw1G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	557
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	429
AcoI	YGGCCR	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	300
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	25, 397
AfiI	CCNNNNNNNGG	1 cut(s)	557
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	4 cut(s)	18, 44, 221, 320
AluI	AGCT	4 cut(s)	18, 44, 221, 320
Alw21I	GWGCWC	2 cut(s)	20, 55
AlwI	GGATC	1 cut(s)	429
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	389, 490
ApeKI	GCWGC	4 cut(s)	79, 188, 218, 538
Asp700I	GAANNNNTTC	2 cut(s)	200, 373
AsuHPI	GGTGA	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	20, 55
BbvI	GCAGC	4 cut(s)	91, 200, 230, 550
BfaI	CTAG	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	112
BisI	GCNGC	4 cut(s)	80, 189, 219, 539
BlsI	GCNGC	4 cut(s)	81, 190, 220, 540
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	226, 253
BmuI	ACTGGG	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	240, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	3 cut(s)	231, 447, 562
Bse3DI	GCAATG	1 cut(s)	533
Bse8I	GATNNNNATC	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	240, 487
BseGI	GGATG	2 cut(s)	112, 241
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	2 cut(s)	36, 588
BseNI	ACTGG	3 cut(s)	231, 447, 562
BseRI	GAGGAG	1 cut(s)	198
BseXI	GCAGC	4 cut(s)	91, 200, 230, 550
BshFI	GGCC	2 cut(s)	391, 492
BsiHKAI	GWGCWC	2 cut(s)	20, 55
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	2 cut(s)	123, 202
BsnI	GGCC	2 cut(s)	391, 492
Bsp1286I	GDGCHC	2 cut(s)	20, 55
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	298, 421, 437, 568
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	2 cut(s)	391, 492
BspCNI	CTCAG	2 cut(s)	37, 589
BspPI	GGATC	1 cut(s)	429
BspTI	CTTAAG	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	533
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	231, 447, 562
BssECI	CCNNGG	2 cut(s)	240, 487
BssMI	GATC	4 cut(s)	298, 421, 437, 568
BssT1I	CCWWGG	2 cut(s)	240, 487
Bst6I	CTCTTC	2 cut(s)	319, 379
BstAFI	CTTAAG	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	45, 214, 597
BstF5I	GGATG	2 cut(s)	112, 241
BstKTI	GATC	4 cut(s)	301, 424, 440, 571
BstMBI	GATC	4 cut(s)	298, 421, 437, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 185, 197
BstV1I	GCAGC	4 cut(s)	91, 200, 230, 550
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	391, 492
BtsCI	GGATG	2 cut(s)	112, 241
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	3 cut(s)	198, 224, 454
CaiI	CAGNNNCTG	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	24, 396
CviAII	CATG	1 cut(s)	167
CviQI	GTAC	2 cut(s)	24, 396
DdeI	CTNAG	3 cut(s)	45, 214, 597
DpnI	GATC	4 cut(s)	300, 423, 439, 570
DpnII	GATC	4 cut(s)	298, 421, 437, 568
DraIII	CACNNNGTG	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	319, 379
EarI	CTCTTC	2 cut(s)	319, 379
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	240, 487
Eco147I	AGGCCT	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	240, 487
EcoT22I	ATGCAT	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	240, 487
FaeI	CATG	1 cut(s)	170
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	1 cut(s)	166
FauNDI	CATATG	2 cut(s)	400, 583
Fnu4HI	GCNGC	4 cut(s)	80, 189, 219, 539
FokI	GGATG	2 cut(s)	119, 248
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	80, 189, 219, 539
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	4 cut(s)	80, 189, 219, 539
HaeIII	GGCC	2 cut(s)	391, 492
Hin1II	CATG	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	4 cut(s)	404, 443, 460, 547
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	442, 598
Hpy188III	TCNNGA	2 cut(s)	104, 516
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	125, 211
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	5 cut(s)	67, 121, 166, 342, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 185, 197
HpyF3I	CTNAG	3 cut(s)	45, 214, 597
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	4 cut(s)	298, 421, 437, 568
LmnI	GCTCC	4 cut(s)	58, 185, 226, 415
LpnPI	CCDG	9 cut(s)	45, 53, 69, 89, 193, 212, 460, 543, 557
Lsp1109I	GCAGC	4 cut(s)	91, 200, 230, 550
LweI	GCATC	2 cut(s)	226, 253
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	4 cut(s)	300, 423, 439, 570
MboI	GATC	4 cut(s)	298, 421, 437, 568
MboII	GAAGA	3 cut(s)	306, 366, 447
MfeI	CAATTG	1 cut(s)	142
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	20, 55
MlsI	TGGCCA	1 cut(s)	492
MluCI	AATT	2 cut(s)	142, 354
MluNI	TGGCCA	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	4 cut(s)	176, 199, 226, 274
Mox20I	TGGCCA	1 cut(s)	492
Mph1103I	ATGCAT	1 cut(s)	168
MroXI	GAANNNNTTC	2 cut(s)	200, 373
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	2 cut(s)	11, 113
MslI	CAYNNNNRTG	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	492
MspCI	CTTAAG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	142
Mva1269I	GAATGC	2 cut(s)	123, 202
MwoI	GCNNNNNNNGC	3 cut(s)	50, 185, 197
NdeI	CATATG	2 cut(s)	400, 583
NdeII	GATC	4 cut(s)	298, 421, 437, 568
NlaIII	CATG	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	391
PctI	GAATGC	2 cut(s)	123, 202
PdmI	GAANNNNTTC	2 cut(s)	200, 373
PfeI	GAWTC	3 cut(s)	404, 443, 547
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	4 cut(s)	81, 190, 220, 540
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
Psp124BI	GAGCTC	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	2 cut(s)	25, 397
RsaNI	GTAC	2 cut(s)	24, 396
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	11, 113
SatI	GCNGC	4 cut(s)	80, 189, 219, 539
Sau3AI	GATC	4 cut(s)	298, 421, 437, 568
SchI	GAGTC	1 cut(s)	454
SduI	GDGCHC	2 cut(s)	20, 55
SetI	ASST	5 cut(s)	20, 46, 223, 322, 596
SfaNI	GCATC	2 cut(s)	226, 253
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	112, 462
SmoI	CTYRAG	2 cut(s)	112, 462
Sse9I	AATT	2 cut(s)	142, 354
SseBI	AGGCCT	1 cut(s)	391
SsiI	CCGC	1 cut(s)	413
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	391
StyI	CCWWGG	2 cut(s)	240, 487
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	142, 354
TatI	WGTACW	2 cut(s)	23, 395
TfiI	GAWTC	3 cut(s)	404, 443, 547
Tru1I	TTAA	2 cut(s)	11, 113
Tru9I	TTAA	2 cut(s)	11, 113
TscAI	CASTG	3 cut(s)	198, 231, 454
TseI	GCWGC	4 cut(s)	79, 188, 218, 538
TspDTI	ATGAA	5 cut(s)	144, 183, 189, 366, 600
TspRI	CASTG	3 cut(s)	198, 231, 454
Van91I	CCANNNNNTGG	1 cut(s)	557
Vha464I	CTTAAG	1 cut(s)	112
XmnI	GAANNNNTTC	2 cut(s)	200, 373
XspI	CTAG	1 cut(s)	393
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.