Rh1AG462000

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
67850988 .. 67855106
4119 bp
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UTR
Exon/CDS
Intron
Rh1AG462000.1

Sequence Viewer

Length: 2046 bp
ATGGGTGAGGTTGTGGTGAGTAGTGAGGAAATGAGAACAGAGAGTGAGAAGCCGAGAAGTACAGAGATGAAGAACAATGGAGGTGGCGGTGACTCATCAAGTGGGGTTGTGATGAGGTGGGAGAAGCTCTTGCCTGGAATGAACATGAGGGTCTTGTTGGTTGAGGCTGATGACTCCACAAGGCATATTATAGCTGCTTTGCTCAGGAAATGTAGCTATAGAGTTGCTGCTGTACCTGATGGCTTAAAGGCATGGGAAATACTGAAGGCAAGGTCCGATAAGATAGACCTCATACTGATGGAAGTAGATCTGCCATCAATATCTGGATTTGCTCTGCTTACGCTAATCATGGAGCATGAGATCTGCAAAAACATTCCTGTTATAATGATGTCCTCTCAGGATTCGATTAACACAGTTTACAAATGCATGACAAGAGGTGTTTCTGACTATCTTGTTAAGCCAATTAGGAAGAATGAACTGAGAAACCTGTGGCAGCATGTTTGGAGGAGACAAGCTTTAGCCAGAAATATCCCACAAGATGAGAGTGTTGGACAAGAAAAGATTGAAGGTACATCTGATAACGATGCTGCAAGCAATCATTCCAGTGGCTATGTGGCATGTGCTCAGAGGAATAAGGAAAACATTGAAAAAGGGACTGATTCTCAGAGCTCTTGTACAAAGCCAGATTTTGAAGCTGAGAGTGCTCCTGTGGATATGCAGGAATTTTCGCAGCAGATACAGGCTAAAAATTTTCTGGATGACTTAAGAATGCAGAAAGATGAAGGGAACACCAATTGTAGTGAAAAGTTGCTTATGCATGAAAATGAAGCCAGAGGACCAGCAGTGGCCTACAAGGACAAGTTAGCAGCTCCACTAGGTGAGGTTGCCAAGCCAGGAAGTCATAGGAGGGATGCTAATATGGATAGTGAGGCTTGTGATGATAACGATCTCCTTGTCAACTCTTCAAGAAATGTCACCGACTTCTTTGGAGTATGCAGTAGTTATCCAGTTAGCAACCTCAGAAACTCTTCATCAAGTAATAGGCCTAGTACATATGATTCTGCTCCGCAGTTGGATCTTTCTTTGAGAAGATCAGATTCCAATGGCATTGAGACTCAGGTTAGTGAAAAAAGGCATACTCTGGGCCATTCTAACGCCTCTGCATTTTCACGATACATCAACAGACCATTGCAGCCCCAGAATCCATTGACTGGCTTAAACGATCAACAAGAGACATACCAAACTACATCTGAGAAGCCTGCATCCCCTGTTAATATGGATTGTGATACTCCTGCTGCTACTTCAAGTATTCCAAGGAGTGTCATCACTTTAGCTACTGGTCAGTCTAACCAGTCTGAAATTGGAACATCATGCCCTCAGCAGAGATTATTTCCTCGTCCCGTTCCCGTTAAAGGTGCAAGGTTTAACAACCTTTGCAATGGGTATGGTACTGTACTGCCTCCAACCTTTTGCACACAGTCAAGTCCATCACCAATGCCAAGTTCAGCTGCCCAGCAGGAACCCTCATTACTAATGAGTACATTTTATCCGACTAATCTTCAAAACCATAAACCAGAGCATGTGTACGACCCAGCTTATCATAATTCCAAGGTTGCGATGGAACAGACAATGCAGCAGCAGGAACAAAGATTCGATGAGGATCGAGGGCAAATCTCTTCAAACAATGATCAGAGTGCAACTAGTAGTTTTTGCAATGGCAATGCAAGTCATCTGAATAGCATGGGGTATGGAAGCGCTTGTGGAAGTAGCAACGTTGATCAGGCGGCAATGTTCAGGGCTGCTCCAGAGAGCAAGAATGAAGACAGTTTCTTTAATCACAGTGGAAATAATCGATCCATCCAAAGAGAAGCAGCTCTCAACAAGTTCCGGTTGAAGAGGAAAGATAGATGCTACGAGAAGAAGGTTCGTTACGAGAGCAGAAAGAAGCTTGCAGAGCAGCGTCCAAGAATAAAGGGACAATTTGTTCGTCAAGTGCTTAATGATCCTTCACATATGGAAGCTGATGGCAATGCATATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

681

Amino Acids

75.72

Weight (kDa)

6.12

Isoelectric Point (pI)

62.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 51 - 162 4.1e-22 Response regulator receiver domain
CCT PF06203 622 - 664 7.6e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 1211
AciI CCGC 3 cut(s) 87, 1067, 1784
AclI AACGTT 1 cut(s) 1773
AclWI GGATC 4 cut(s) 1083, 1668, 1848, 1997
AcsI RAATTY 2 cut(s) 722, 748
AcuI CTGAAG 1 cut(s) 284
AdeI CACNNNGTG 1 cut(s) 878
AfaI GTAC 9 cut(s) 61, 234, 571, 676, 1051, 1450, 1455, 1540, 1586
AfeI AGCGCT 1 cut(s) 1756
AfiI CCNNNNNNNGG 2 cut(s) 1211, 1412
AflII CTTAAG 1 cut(s) 763
AgsI TTSAA 8 cut(s) 566, 647, 692, 966, 1305, 1562, 1680, 1894
AhlI ACTAGT 1 cut(s) 1700
AjnI CCWGG 2 cut(s) 133, 892
AjuI GAANNNNNNNTTGG 2 cut(s) 1486, 1518
AloI GAACNNNNNNTCC 2 cut(s) 1968, 2000
Alw21I GWGCWC 3 cut(s) 625, 671, 706
Alw26I GTCTC 3 cut(s) 502, 1106, 1226
AlwI GGATC 4 cut(s) 1083, 1668, 1848, 1997
Aor51HI AGCGCT 1 cut(s) 1756
AoxI GGCC 3 cut(s) 846, 1043, 1144
ApoI RAATTY 2 cut(s) 722, 748
ArsI GACNNNNNNTTYG 2 cut(s) 1968, 2000
Asp700I GAANNNNTTC 1 cut(s) 1027
AspLEI GCGC 1 cut(s) 1757
AspS9I GGNCC 3 cut(s) 273, 836, 1144
AsuHPI GGTGA 6 cut(s) 17, 28, 101, 890, 967, 1482
AvaII GGWCC 2 cut(s) 273, 836
BanII GRGCYC 1 cut(s) 671
BarI GAAGNNNNNNTAC 2 cut(s) 1913, 1945
BbsI GAAGAC 1 cut(s) 1827
Bbv12I GWGCWC 3 cut(s) 625, 671, 706
BbvCI CCTCAGC 1 cut(s) 1377
BccI CCATC 7 cut(s) 233, 292, 322, 1495, 1612, 1865, 2018
BciT130I CCWGG 2 cut(s) 135, 894
BclI TGATCA 2 cut(s) 1687, 1777
BcoDI GTCTC 3 cut(s) 502, 1106, 1226
BcuI ACTAGT 1 cut(s) 1700
BfaI CTAG 3 cut(s) 875, 1047, 1701
BfmI CTRYAG 1 cut(s) 217
BfoI RGCGCY 1 cut(s) 1758
BfrI CTTAAG 1 cut(s) 763
BglII AGATCT 2 cut(s) 307, 360
Bme1390I CCNGG 2 cut(s) 135, 894
Bme18I GGWCC 2 cut(s) 273, 836
BmgT120I GGNCC 3 cut(s) 273, 836, 1144
BmiI GGNNCC 1 cut(s) 1521
BmrFI CCNGG 2 cut(s) 135, 894
BmsI GCATC 4 cut(s) 574, 901, 1271, 1898
BpiI GAAGAC 1 cut(s) 1827
BpmI CTGGAG 1 cut(s) 1788
Bpu10I CCTNAGC 2 cut(s) 203, 1377
Bsa29I ATCGAT 1 cut(s) 1852
BsaBI GATNNNNATC 2 cut(s) 945, 1659
BsaJI CCNNGG 2 cut(s) 1313, 1608
BsaWI WCCGGW 1 cut(s) 1887
Bsc4I CCNNNNNNNGG 2 cut(s) 1211, 1412
Bse1I ACTGG 5 cut(s) 603, 1007, 1216, 1342, 1351
Bse3DI GCAATG 6 cut(s) 1187, 1444, 1720, 1726, 1794, 2035
Bse8I GATNNNNATC 2 cut(s) 945, 1659
BseBI CCWGG 2 cut(s) 135, 894
BseCI ATCGAT 1 cut(s) 1852
BseDI CCNNGG 2 cut(s) 1313, 1608
BseGI GGATG 4 cut(s) 763, 916, 1262, 1857
BseJI GATNNNNATC 2 cut(s) 945, 1659
BseLI CCNNNNNNNGG 2 cut(s) 1211, 1412
BseMI GCAATG 6 cut(s) 1187, 1444, 1720, 1726, 1794, 2035
BseNI ACTGG 5 cut(s) 603, 1007, 1216, 1342, 1351
BseRI GAGGAG 1 cut(s) 520
BseYI CCCAGC 2 cut(s) 1512, 1591
BshFI GGCC 3 cut(s) 848, 1045, 1146
BshVI ATCGAT 1 cut(s) 1852
BsiHKAI GWGCWC 3 cut(s) 625, 671, 706
BsiSI CCGG 1 cut(s) 1888
BslFI GGGAC 3 cut(s) 667, 1383, 1989
BslI CCNNNNNNNGG 2 cut(s) 1211, 1412
BsmAI GTCTC 3 cut(s) 502, 1106, 1226
BsmFI GGGAC 3 cut(s) 667, 1383, 1989
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 3 cut(s) 848, 1045, 1146
Bsp1286I GDGCHC 3 cut(s) 625, 671, 706
Bsp1407I TGTACA 1 cut(s) 674
BspACI CCGC 3 cut(s) 87, 1067, 1784
BspANI GGCC 3 cut(s) 848, 1045, 1146
BspDI ATCGAT 1 cut(s) 1852
BspLI GGNNCC 1 cut(s) 1521
BspPI GGATC 4 cut(s) 1083, 1668, 1848, 1997
BspTI CTTAAG 1 cut(s) 763
BsrDI GCAATG 6 cut(s) 1187, 1444, 1720, 1726, 1794, 2035
BsrGI TGTACA 1 cut(s) 674
BsrI ACTGG 5 cut(s) 603, 1007, 1216, 1342, 1351
BssECI CCNNGG 2 cut(s) 1313, 1608
BssT1I CCWWGG 2 cut(s) 1313, 1608
Bst2UI CCWGG 2 cut(s) 135, 894
Bst4CI ACNGT 5 cut(s) 415, 1453, 1479, 1826, 1841
Bst6I CTCTTC 4 cut(s) 967, 1033, 1681, 1889
BstAFI CTTAAG 1 cut(s) 763
BstAUI TGTACA 1 cut(s) 674
BstC8I GCNNGC 3 cut(s) 592, 1260, 1950
BstF5I GGATG 4 cut(s) 763, 916, 1262, 1857
BstH2I RGCGCY 1 cut(s) 1758
BstHHI GCGC 1 cut(s) 1757
BstMAI GTCTC 3 cut(s) 502, 1106, 1226
BstMWI GCNNNNNNNGC 2 cut(s) 701, 1954
BstNI CCWGG 2 cut(s) 135, 894
BstNSI RCATGY 3 cut(s) 500, 621, 1583
BstSCI CCNGG 2 cut(s) 133, 892
BstSFI CTRYAG 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 1827
BstX2I RGATCY 3 cut(s) 307, 360, 1075
BstYI RGATCY 3 cut(s) 307, 360, 1075
Bsu15I ATCGAT 1 cut(s) 1852
BsuRI GGCC 3 cut(s) 848, 1045, 1146
BsuTUI ATCGAT 1 cut(s) 1852
BtgZI GCGATG 1 cut(s) 1631
BtsCI GGATG 4 cut(s) 763, 916, 1262, 1857
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 3 cut(s) 610, 849, 1846
Cac8I GCNNGC 3 cut(s) 592, 1260, 1950
CfoI GCGC 1 cut(s) 1757
Cfr13I GGNCC 3 cut(s) 273, 836, 1144
ClaI ATCGAT 1 cut(s) 1852
CseI GACGC 1 cut(s) 1949
Csp6I GTAC 9 cut(s) 60, 233, 570, 675, 1050, 1449, 1454, 1539, 1585
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviQI GTAC 9 cut(s) 60, 233, 570, 675, 1050, 1449, 1454, 1539, 1585
DraIII CACNNNGTG 1 cut(s) 878
Eam1104I CTCTTC 4 cut(s) 967, 1033, 1681, 1889
EarI CTCTTC 4 cut(s) 967, 1033, 1681, 1889
Ecl136II GAGCTC 1 cut(s) 669
Eco130I CCWWGG 2 cut(s) 1313, 1608
Eco147I AGGCCT 1 cut(s) 1045
Eco24I GRGCYC 1 cut(s) 671
Eco47I GGWCC 2 cut(s) 273, 836
Eco47III AGCGCT 1 cut(s) 1756
Eco53kI GAGCTC 1 cut(s) 669
Eco57I CTGAAG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 669
EcoRII CCWGG 2 cut(s) 133, 892
EcoT14I CCWWGG 2 cut(s) 1313, 1608
EcoT22I ATGCAT 3 cut(s) 428, 819, 2035
EcoT38I GRGCYC 1 cut(s) 671
ErhI CCWWGG 2 cut(s) 1313, 1608
FaqI GGGAC 3 cut(s) 667, 1383, 1989
FauNDI CATATG 3 cut(s) 1054, 2013, 2035
FbaI TGATCA 2 cut(s) 1687, 1777
FokI GGATG 4 cut(s) 770, 923, 1249, 1844
FriOI GRGCYC 1 cut(s) 671
FspBI CTAG 3 cut(s) 875, 1047, 1701
GlaI GCGC 1 cut(s) 1756
GsaI CCCAGC 2 cut(s) 1516, 1595
GsuI CTGGAG 1 cut(s) 1788
HaeII RGCGCY 1 cut(s) 1758
HaeIII GGCC 3 cut(s) 848, 1045, 1146
HapII CCGG 1 cut(s) 1888
HgaI GACGC 1 cut(s) 1949
HhaI GCGC 1 cut(s) 1757
Hin6I GCGC 1 cut(s) 1755
HinP1I GCGC 1 cut(s) 1755
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HindIII AAGCTT 2 cut(s) 513, 1946
HinfI GANTC 9 cut(s) 92, 173, 401, 659, 1058, 1097, 1114, 1201, 1650
HpaII CCGG 1 cut(s) 1888
HphI GGTGA 6 cut(s) 17, 28, 101, 890, 967, 1482
Hpy166II GTNNAC 3 cut(s) 418, 958, 1585
Hpy188III TCNNGA 7 cut(s) 205, 324, 398, 755, 966, 1170, 1805
Hpy8I GTNNAC 3 cut(s) 418, 958, 1585
HpyAV CCTTC 5 cut(s) 259, 560, 776, 1915, 2016
HpyCH4III ACNGT 5 cut(s) 415, 1453, 1479, 1826, 1841
HpyCH4IV ACGT 1 cut(s) 1773
HpyF10VI GCNNNNNNNGC 2 cut(s) 701, 1954
HpySE526I ACGT 1 cut(s) 1773
HspAI GCGC 1 cut(s) 1755
Ksp22I TGATCA 2 cut(s) 1687, 1777
LmnI GCTCC 5 cut(s) 352, 709, 874, 1069, 1807
LweI GCATC 4 cut(s) 574, 901, 1271, 1898
MaeI CTAG 3 cut(s) 875, 1047, 1701
MaeII ACGT 1 cut(s) 1773
MaeIII GTNAC 3 cut(s) 89, 973, 1928
MfeI CAATTG 1 cut(s) 793
MflI RGATCY 3 cut(s) 307, 360, 1075
MhlI GDGCHC 3 cut(s) 625, 671, 706
MluCI AATT 7 cut(s) 462, 722, 748, 793, 1359, 1603, 1979
MlyI GAGTC 3 cut(s) 86, 167, 1108
MmeI TCCRAC 4 cut(s) 529, 1053, 1487, 1574
Mph1103I ATGCAT 3 cut(s) 428, 819, 2035
MroXI GAANNNNTTC 1 cut(s) 1027
MslI CAYNNNNRTG 3 cut(s) 296, 603, 822
MspA1I CMGCKG 1 cut(s) 1508
MspCI CTTAAG 1 cut(s) 763
MspI CCGG 1 cut(s) 1888
MspR9I CCNGG 2 cut(s) 135, 894
MunI CAATTG 1 cut(s) 793
Mva1269I GAATGC 1 cut(s) 774
MvaI CCWGG 2 cut(s) 135, 894
MwoI GCNNNNNNNGC 2 cut(s) 701, 1954
NdeI CATATG 3 cut(s) 1054, 2013, 2035
NlaIV GGNNCC 1 cut(s) 1521
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 89, 973
NsiI ATGCAT 3 cut(s) 428, 819, 2035
NspI RCATGY 3 cut(s) 500, 621, 1583
PceI AGGCCT 1 cut(s) 1045
PctI GAATGC 1 cut(s) 774
PdmI GAANNNNTTC 1 cut(s) 1027
PfeI GAWTC 6 cut(s) 401, 659, 1058, 1097, 1201, 1650
PflMI CCANNNNNTGG 1 cut(s) 1211
PleI GAGTC 3 cut(s) 86, 167, 1108
PpsI GAGTC 3 cut(s) 86, 167, 1108
PsiI TTATAA 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 671
Psp1406I AACGTT 1 cut(s) 1773
Psp6I CCWGG 2 cut(s) 133, 892
PspFI CCCAGC 2 cut(s) 1512, 1591
PspGI CCWGG 2 cut(s) 133, 892
PspN4I GGNNCC 1 cut(s) 1521
PspPI GGNCC 3 cut(s) 273, 836, 1144
PsrI GAACNNNNNNTAC 2 cut(s) 1512, 1544
PsuI RGATCY 3 cut(s) 307, 360, 1075
PvuII CAGCTG 1 cut(s) 1508
RsaI GTAC 9 cut(s) 61, 234, 571, 676, 1051, 1450, 1455, 1540, 1586
RsaNI GTAC 9 cut(s) 60, 233, 570, 675, 1050, 1449, 1454, 1539, 1585
RseI CAYNNNNRTG 3 cut(s) 296, 603, 822
SacI GAGCTC 1 cut(s) 671
Sau96I GGNCC 3 cut(s) 273, 836, 1144
SchI GAGTC 3 cut(s) 86, 167, 1108
ScrFI CCNGG 2 cut(s) 135, 894
SduI GDGCHC 3 cut(s) 625, 671, 706
SfaNI GCATC 4 cut(s) 574, 901, 1271, 1898
SfcI CTRYAG 1 cut(s) 217
SinI GGWCC 2 cut(s) 273, 836
SmiMI CAYNNNNRTG 3 cut(s) 296, 603, 822
SmlI CTYRAG 1 cut(s) 763
SmoI CTYRAG 1 cut(s) 763
SpeI ACTAGT 1 cut(s) 1700
Sse9I AATT 7 cut(s) 462, 722, 748, 793, 1359, 1603, 1979
SseBI AGGCCT 1 cut(s) 1045
SsiI CCGC 3 cut(s) 87, 1067, 1784
SspMI CTAG 3 cut(s) 875, 1047, 1701
SstI GAGCTC 1 cut(s) 671
StuI AGGCCT 1 cut(s) 1045
StyD4I CCNGG 2 cut(s) 133, 892
StyI CCWWGG 2 cut(s) 1313, 1608
TaaI ACNGT 5 cut(s) 415, 1453, 1479, 1826, 1841
TaiI ACGT 1 cut(s) 1776
TaqI TCGA 4 cut(s) 404, 1653, 1663, 1852
TasI AATT 7 cut(s) 462, 722, 748, 793, 1359, 1603, 1979
TatI WGTACW 5 cut(s) 59, 674, 1049, 1453, 1538
TauI GCSGC 1 cut(s) 1787
TfiI GAWTC 6 cut(s) 401, 659, 1058, 1097, 1201, 1650
TscAI CASTG 3 cut(s) 610, 849, 1846
TseFI GTSAC 2 cut(s) 89, 973
Tsp45I GTSAC 2 cut(s) 89, 973
TspDTI ATGAA 8 cut(s) 83, 155, 489, 795, 834, 840, 1020, 1833
TspRI CASTG 3 cut(s) 610, 849, 1846
Van91I CCANNNNNTGG 1 cut(s) 1211
Vha464I CTTAAG 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 273, 836
XapI RAATTY 2 cut(s) 722, 748
XceI RCATGY 3 cut(s) 500, 621, 1583
XcmI CCANNNNNNNNNTGG 3 cut(s) 610, 1358, 1615
XmnI GAANNNNTTC 1 cut(s) 1027
XspI CTAG 3 cut(s) 875, 1047, 1701
Zsp2I ATGCAT 3 cut(s) 428, 819, 2035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.