Rw1G040980

Two-component response regulator-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005980
Physical Location & Seq
Reverse (-)
68040031 .. 68044315
4285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040980.1

Sequence Viewer

Length: 771 bp
ATGGATTGTGATACCCCTGCTGCTACTTCAAGTATTCCAAGGAGTGTCATCACTGTAGCTACTGGTCAGTCTAACCAGTCTGAAATTGGAACGTCATGCCCTCAGCAGAGATTATTTCCTCTTCCTGTTCCCATTAAAGGTGTAAGGTTTAACAACCTTTGCAATGGGTATGGTACTGTACTGCCTCCAACCTTTTGCACACAGTCAAGTCCATCACCAATGCCAAGTTCAGCTGCCCAGCAGGAACCCTCATTTCTAATGAGTACATTTTATCCGACTAATCTTCAAAACCATAAACCAGAGCATGTGTACGACCCAGCTTATCATAATTCCAAGGTTGCGATGGAACAGACAATGCAGCAGCAGGAACAAAGATTCGATGAGGATCGAGGGCATATCTCTTCAAACAATGATCAGAGTGCAACTAGTAGTTTTTGCAATGGCAATGCAAGTCATCTGAATAGCATGGGGTATGGAAGTGCTTGTGGAAGTAACAACGTTGATCAGGTGGCTATGTTCAGGGCTGCTCCAGAGAGCAAGAATGAAGACAGTGTCTTTAATCACAGTGGAAATAATCGATCCATCCAAAGAGAAGCAGCTCTCAACAAGTTCCGGTTGAAGAGGAAAGATAGATGCTACGAGAAGAAGGTTCGTTACGAGAGCAGAAAGAAGCTTGCAGAGCAGCGTCCAAGAATAAAGGGACAATTTGTTCGTCAAGTGCTTAATGATCCTTCACATATGGAAGCTGATGGCAATGCATATGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
CCT Response_reg

Protein Analysis

256

Amino Acids

28.56

Weight (kDa)

8.14

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 197 - 239 2e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 498
AclWI GGATC 3 cut(s) 393, 573, 722
AfaI GTAC 4 cut(s) 175, 180, 265, 311
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 4 cut(s) 30, 287, 405, 619
AhlI ACTAGT 1 cut(s) 425
AjuI GAANNNNNNNTTGG 2 cut(s) 211, 243
AloI GAACNNNNNNTCC 2 cut(s) 693, 725
AluBI AGCT 6 cut(s) 59, 233, 320, 599, 673, 746
AluI AGCT 6 cut(s) 59, 233, 320, 599, 673, 746
AlwI GGATC 3 cut(s) 393, 573, 722
ApeKI GCWGC 7 cut(s) 20, 233, 358, 361, 524, 596, 682
ArsI GACNNNNNNTTYG 2 cut(s) 693, 725
AsuHPI GGTGA 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 638, 670
BbsI GAAGAC 1 cut(s) 552
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 7 cut(s) 7, 220, 370, 373, 511, 608, 694
BccI CCATC 4 cut(s) 220, 337, 590, 743
BclI TGATCA 2 cut(s) 412, 502
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 7 cut(s) 21, 234, 359, 362, 525, 597, 683
BlsI GCNGC 7 cut(s) 22, 235, 360, 363, 526, 598, 684
BmiI GGNNCC 1 cut(s) 246
BmsI GCATC 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 552
BpmI CTGGAG 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 102
Bsa29I ATCGAT 1 cut(s) 577
BsaBI GATNNNNATC 1 cut(s) 384
BsaJI CCNNGG 2 cut(s) 38, 333
BsaWI WCCGGW 1 cut(s) 612
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 67, 76
Bse3DI GCAATG 4 cut(s) 169, 445, 451, 760
Bse8I GATNNNNATC 1 cut(s) 384
BseCI ATCGAT 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 38, 333
BseGI GGATG 1 cut(s) 582
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 4 cut(s) 169, 445, 451, 760
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 67, 76
BseXI GCAGC 7 cut(s) 7, 220, 370, 373, 511, 608, 694
BseYI CCCAGC 2 cut(s) 237, 316
BshVI ATCGAT 1 cut(s) 577
BsiSI CCGG 1 cut(s) 613
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 714
Bsp143I GATC 5 cut(s) 385, 412, 502, 578, 727
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 3 cut(s) 393, 573, 722
BsrDI GCAATG 4 cut(s) 169, 445, 451, 760
BsrI ACTGG 2 cut(s) 67, 76
BssECI CCNNGG 2 cut(s) 38, 333
BssMI GATC 5 cut(s) 385, 412, 502, 578, 727
BssT1I CCWWGG 2 cut(s) 38, 333
Bst4CI ACNGT 5 cut(s) 55, 178, 204, 551, 566
Bst6I CTCTTC 3 cut(s) 126, 406, 614
BstC8I GCNNGC 1 cut(s) 675
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 582
BstKTI GATC 5 cut(s) 388, 415, 505, 581, 730
BstMBI GATC 5 cut(s) 385, 412, 502, 578, 727
BstMWI GCNNNNNNNGC 1 cut(s) 679
BstNSI RCATGY 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 7 cut(s) 7, 220, 370, 373, 511, 608, 694
BstV2I GAAGAC 1 cut(s) 552
Bsu15I ATCGAT 1 cut(s) 577
BsuTUI ATCGAT 1 cut(s) 577
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 1 cut(s) 582
BtsIMutI CAGTG 3 cut(s) 51, 556, 571
Cac8I GCNNGC 1 cut(s) 675
ClaI ATCGAT 1 cut(s) 577
CseI GACGC 1 cut(s) 674
Csp6I GTAC 4 cut(s) 174, 179, 264, 310
CviAII CATG 3 cut(s) 96, 305, 466
CviJI RGCY 8 cut(s) 59, 233, 320, 512, 524, 599, 673, 746
CviKI_1 RGCY 8 cut(s) 59, 233, 320, 512, 524, 599, 673, 746
CviQI GTAC 4 cut(s) 174, 179, 264, 310
DdeI CTNAG 1 cut(s) 102
DpnI GATC 5 cut(s) 387, 414, 504, 580, 729
DpnII GATC 5 cut(s) 385, 412, 502, 578, 727
Eam1104I CTCTTC 3 cut(s) 126, 406, 614
EarI CTCTTC 3 cut(s) 126, 406, 614
Eco130I CCWWGG 2 cut(s) 38, 333
EcoT14I CCWWGG 2 cut(s) 38, 333
EcoT22I ATGCAT 1 cut(s) 760
ErhI CCWWGG 2 cut(s) 38, 333
FaeI CATG 3 cut(s) 99, 308, 469
FaqI GGGAC 1 cut(s) 714
FatI CATG 3 cut(s) 95, 304, 465
FauNDI CATATG 2 cut(s) 738, 760
FbaI TGATCA 2 cut(s) 412, 502
Fnu4HI GCNGC 7 cut(s) 21, 234, 359, 362, 525, 597, 683
FokI GGATG 1 cut(s) 569
Fsp4HI GCNGC 7 cut(s) 21, 234, 359, 362, 525, 597, 683
FspBI CTAG 1 cut(s) 426
GluI GCNGC 7 cut(s) 21, 234, 359, 362, 525, 597, 683
GsaI CCCAGC 2 cut(s) 241, 320
GsuI CTGGAG 1 cut(s) 513
HapII CCGG 1 cut(s) 613
HgaI GACGC 1 cut(s) 674
Hin1II CATG 3 cut(s) 99, 308, 469
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 1 cut(s) 375
HpaII CCGG 1 cut(s) 613
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 4 cut(s) 82, 276, 417, 459
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 640, 741
HpyCH4III ACNGT 5 cut(s) 55, 178, 204, 551, 566
HpyCH4IV ACGT 2 cut(s) 92, 498
HpyCH4V TGCA 8 cut(s) 162, 198, 358, 422, 438, 449, 677, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 679
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 92, 498
Hsp92II CATG 3 cut(s) 99, 308, 469
Ksp22I TGATCA 2 cut(s) 412, 502
Kzo9I GATC 5 cut(s) 385, 412, 502, 578, 727
LmnI GCTCC 1 cut(s) 532
Lsp1109I GCAGC 7 cut(s) 7, 220, 370, 373, 511, 608, 694
LweI GCATC 1 cut(s) 623
MaeI CTAG 1 cut(s) 426
MaeII ACGT 2 cut(s) 92, 498
MaeIII GTNAC 2 cut(s) 491, 653
MalI GATC 5 cut(s) 387, 414, 504, 580, 729
MboI GATC 5 cut(s) 385, 412, 502, 578, 727
MboII GAAGA 6 cut(s) 113, 275, 393, 557, 631, 655
MluCI AATT 3 cut(s) 84, 328, 704
MmeI TCCRAC 2 cut(s) 212, 299
MnlI CCTC 8 cut(s) 111, 129, 195, 259, 376, 383, 615, 757
Mph1103I ATGCAT 1 cut(s) 760
MseI TTAA 4 cut(s) 135, 150, 558, 723
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 613
MwoI GCNNNNNNNGC 1 cut(s) 679
NdeI CATATG 2 cut(s) 738, 760
NdeII GATC 5 cut(s) 385, 412, 502, 578, 727
NlaIII CATG 3 cut(s) 99, 308, 469
NlaIV GGNNCC 1 cut(s) 246
NsiI ATGCAT 1 cut(s) 760
NspI RCATGY 1 cut(s) 308
PfeI GAWTC 1 cut(s) 375
PflFI GACNNNGTC 1 cut(s) 551
PkrI GCNGC 7 cut(s) 22, 235, 360, 363, 526, 598, 684
Psp1406I AACGTT 1 cut(s) 498
PspFI CCCAGC 2 cut(s) 237, 316
PspN4I GGNNCC 1 cut(s) 246
PsyI GACNNNGTC 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 4 cut(s) 175, 180, 265, 311
RsaNI GTAC 4 cut(s) 174, 179, 264, 310
SaqAI TTAA 4 cut(s) 135, 150, 558, 723
SatI GCNGC 7 cut(s) 21, 234, 359, 362, 525, 597, 683
Sau3AI GATC 5 cut(s) 385, 412, 502, 578, 727
SfaNI GCATC 1 cut(s) 623
SfcI CTRYAG 1 cut(s) 54
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 3 cut(s) 84, 328, 704
SspMI CTAG 1 cut(s) 426
StyI CCWWGG 2 cut(s) 38, 333
TaaI ACNGT 5 cut(s) 55, 178, 204, 551, 566
TaiI ACGT 2 cut(s) 95, 501
TaqI TCGA 3 cut(s) 378, 388, 577
TasI AATT 3 cut(s) 84, 328, 704
TatI WGTACW 2 cut(s) 178, 263
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 4 cut(s) 135, 150, 558, 723
Tru9I TTAA 4 cut(s) 135, 150, 558, 723
TscAI CASTG 3 cut(s) 58, 556, 571
TseI GCWGC 7 cut(s) 20, 233, 358, 361, 524, 596, 682
TspDTI ATGAA 1 cut(s) 558
TspRI CASTG 3 cut(s) 58, 556, 571
Tth111I GACNNNGTC 1 cut(s) 551
XceI RCATGY 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 2 cut(s) 83, 340
XspI CTAG 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.