Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005980

Physical Location & Seq

Genomic Coordinates Reverse (-)

27727483 .. 27728185

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG139500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCATGAAAATGAAGCCAGAGGAGCAGCAGTGAATGCCTGCAAGGACAACTTAGCAGCTCCACTGGGTGAGGATGCCAAGGCAGAAAGTCATAGGAGAGATGCTAATATGGATAGTGAGGCTTGTGATGATAACGATCTCCTTGTCAACTCTTCAGCTACCGACTTCTTTGGAGTATGCAGTAGTTATCCAATTAGCAACCACAGAAACTCTTCATCAAGTAATAGGCCTAGTACATATGATTCTGCTCCGCAGTTGGATCTTTCTTTGAGAAGATCAGATTCCAGTGGCTTTGAGACTCAAGTTACTGAAAAAAGGCATACCCTTGGCCATTCTAACGCCTCAGCCTTTTCACGATACACCAACAGACCATTGCAGCCTCAGAATCCATTGACTGGCATAAACGATCAACAAAAGGCATATGAAACTACATCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

146

Amino Acids

15.97

Weight (kDa)

5.15

Isoelectric Point (pI)

65.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24470
fragaria_vesca	FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920
malus_domestica	MD01G1228200.v1.1 MD07G1299100.v1.1
prunus_persica	Prupe.2G318900_v2.0.a1
pyrus_communis	pycom01g23650 pycom07g27150 pycom07g27160
rosa_chinensis	RchiOBHm_Chr1g0382871
rosa_laevigata	RLG00000026152
rosa_multiflora	Rmu_sc0002242.1_g000013 Rmu_sc0010366.1_g000006
rosa_roxburghii	Rroxscaffold_4G00277820
rosa_rugosa	Rorug01G0437000
rosa_samantha	Rh1AG462000 Rh1BG419000 Rh1CG432700 Rh1DG451100 Rh4BG143700 Rh4BG143800 Rh4DG139500
rosa_wichuraiana	Rw1G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	395
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	395
AluBI	AGCT	2 cut(s)	59, 158
AluI	AGCT	2 cut(s)	59, 158
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	227, 328
ApeKI	GCWGC	3 cut(s)	26, 56, 376
Asp700I	GAANNNNTTC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	330
BbvCI	CCTCAGC	1 cut(s)	343
BbvI	GCAGC	3 cut(s)	38, 68, 388
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	3 cut(s)	27, 57, 377
BlsI	GCNGC	3 cut(s)	28, 58, 378
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	2 cut(s)	64, 91
BmuI	ACTGGG	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	78, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	3 cut(s)	69, 285, 400
Bse3DI	GCAATG	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	78, 325
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	3 cut(s)	357, 395, 426
BseNI	ACTGG	3 cut(s)	69, 285, 400
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	38, 68, 388
BshFI	GGCC	2 cut(s)	229, 330
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	229, 330
Bsp143I	GATC	4 cut(s)	136, 259, 275, 406
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	2 cut(s)	229, 330
BspCNI	CTCAG	3 cut(s)	356, 394, 427
BspPI	GGATC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	371
BsrI	ACTGG	3 cut(s)	69, 285, 400
BssECI	CCNNGG	2 cut(s)	78, 325
BssMI	GATC	4 cut(s)	136, 259, 275, 406
BssT1I	CCWWGG	2 cut(s)	78, 325
Bst6I	CTCTTC	2 cut(s)	157, 217
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	4 cut(s)	52, 343, 381, 435
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	4 cut(s)	139, 262, 278, 409
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	4 cut(s)	136, 259, 275, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 35
BstV1I	GCAGC	3 cut(s)	38, 68, 388
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	229, 330
BtsCI	GGATG	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	3 cut(s)	36, 62, 292
Cac8I	GCNNGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	9 cut(s)	17, 59, 122, 158, 229, 291, 330, 347, 379
CviKI_1	RGCY	9 cut(s)	17, 59, 122, 158, 229, 291, 330, 347, 379
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	4 cut(s)	52, 343, 381, 435
DpnI	GATC	4 cut(s)	138, 261, 277, 408
DpnII	GATC	4 cut(s)	136, 259, 275, 406
DraIII	CACNNNGTG	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	157, 217
EarI	CTCTTC	2 cut(s)	157, 217
Eco130I	CCWWGG	2 cut(s)	78, 325
Eco147I	AGGCCT	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	138
EcoT14I	CCWWGG	2 cut(s)	78, 325
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	78, 325
FaeI	CATG	1 cut(s)	8
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	1 cut(s)	4
FauNDI	CATATG	2 cut(s)	238, 421
Fnu4HI	GCNGC	3 cut(s)	27, 57, 377
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	27, 57, 377
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	3 cut(s)	27, 57, 377
HaeIII	GGCC	2 cut(s)	229, 330
Hin1II	CATG	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	4 cut(s)	242, 281, 298, 385
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	280, 384, 436
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4V	TGCA	4 cut(s)	4, 42, 180, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 35
HpyF3I	CTNAG	4 cut(s)	52, 343, 381, 435
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	4 cut(s)	136, 259, 275, 406
LmnI	GCTCC	3 cut(s)	23, 64, 253
LpnPI	CCDG	5 cut(s)	31, 50, 52, 298, 381
Lsp1109I	GCAGC	3 cut(s)	38, 68, 388
LweI	GCATC	2 cut(s)	64, 91
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	4 cut(s)	138, 261, 277, 408
MboI	GATC	4 cut(s)	136, 259, 275, 406
MboII	GAAGA	3 cut(s)	144, 204, 285
MflI	RGATCY	1 cut(s)	259
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	1 cut(s)	192
MluNI	TGGCCA	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	5 cut(s)	14, 64, 112, 352, 390
Mox20I	TGGCCA	1 cut(s)	330
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	23, 35
NdeI	CATATG	2 cut(s)	238, 421
NdeII	GATC	4 cut(s)	136, 259, 275, 406
NlaIII	CATG	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	229
PctI	GAATGC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	242, 281, 385
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	28, 58, 378
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	9
SatI	GCNGC	3 cut(s)	27, 57, 377
Sau3AI	GATC	4 cut(s)	136, 259, 275, 406
SchI	GAGTC	1 cut(s)	292
SetI	ASST	2 cut(s)	61, 160
SfaNI	GCATC	2 cut(s)	64, 91
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	1 cut(s)	192
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	229
StyI	CCWWGG	2 cut(s)	78, 325
TasI	AATT	1 cut(s)	192
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	242, 281, 385
TscAI	CASTG	3 cut(s)	36, 69, 292
TseI	GCWGC	3 cut(s)	26, 56, 376
TspDTI	ATGAA	4 cut(s)	21, 27, 204, 438
TspRI	CASTG	3 cut(s)	36, 69, 292
Van91I	CCANNNNNTGG	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.