Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005980

Physical Location & Seq

Genomic Coordinates Forward (+)

68872977 .. 68877338

Gene Structure 4362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG432700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGGGTGAGGTTGTGGTGAGTAGTGAGGAAATGAGAACAGAGAGTGAGAAGCAGAGAAGTACAGAGATGAAGAACAATGGTGGAGGTGGCGGTGACTCATCAAGTGGGGTTGTGATGAGGTGGGAGAAGCTCTTGCCTGGAATGAACATGAGGGTCTTGTTGGTTGAGGCTGATGACTCCACAAGGCATATTATAGCTGCTTTGCTCAGGAAATGTAGCTATAGAGTTGCTGCTGTGCCTGATGGCTTAAAGGCATGGGAAATACTGAAGGCAAGGTCCAATAAGATAGACCTCATACTGATGGAAGTAGATCTGCCATCAATATCTGGATTTGCTCTGCTTACGCTAATCATGGAGCATGAGATCTGCAAAAACATTCCTGTTATAATGATGTCCTCTCAGGATTCGATTAACACAGTTTACAAATGCATGACAAGAGGTGTTTCCGACTATCTTGTTAAGCCAATTAGGAAGAATGAACTGAGAAACCTGTGGCAGCATGTTTGGAGGAGACAAGCTTTAGCCAGAAATATCCCACAAGATGAGAGTGTTGGACAAGAAAAGATTGAAGGTACATCTGATAACGATGCTGCAAGCAATCATTCCAGTGGCTATGTGGCATGTGCTCAGAGGAATAAGGAAAACATTGAAAAAGGGACTGATTCTCAGAGCTCTTGTACAAAGCCAGATTTTGAAGCTGAGAGTGCTCCTGTGGATATGCAGGAATTTTCGCAGCAGATACAGGCTAAAAATTTTCTGGATGACTTAAGAATGCAGAAAGATGAAGGGAACACCAATTGTAGTGAAAAGTTGCTTATGCATGAAAATGAAGCCAGAGGACCAGCAGTGGCCTACAAGGACAAGTTAGCAGCTCCACTAGGTGAGGTTGCCAAGCCAGGAAGTCATAGGAGGGATGCTAATATGGATAATGAGGCTTGTGATGATAACGATCTCCTTGTCAACTCTTCAAGAAATGTCACCGACTTCTTTGGAGTATGCAGTAGTTATCCAATTAGCAACCTCAGAAACTCTTCATCAAGTAATAGGCCTAGTACATATGATTCTGCTCCGCAGTTGGATCTTTCTTTGAGAAGATCAGATTCCAGTGGCATTGAGACTCAAGTTACTGAAAAAAGGCATACTCTGGGCCATTCTAACGCCTCAGCATTTTCACGATACATCAACAGACCATTGCAGCCCCAGAATTCATTGACTGGCATAAACGATCAACAAAAGGCATACCAAACTACATCTGAGAAGCCTGCATCCCCTGTTAATATGGACTGTGATACTCCTGCTGCTACTTCAAGTATTCCAAGGAGTGTCATCACTTTAGCTACTGGTCAGTCTAATCAGTCTGAAATTGGAACGTCATGCCCTCAGCAGAGATCATTTCCTGTTCCTGTTCCTGTTAAAGGTGTAAGGTTTAACAACCTTTGCAATGGGTATGGTACTGTACTGCCTCCAACCTTTTGCACACAGTCAAGTCCATCACCAATGCCAAGTTCAGCTGCCCAGCAGGAACCCTCATTTCTAATGAGTACATTTTATCCGACTAATCTTCAAAACCATAAACCAGAGCATGTGTACGACCCAGCTTATCATAATTCCAAGGTTGCGATGGAACAGACAATGCAGCAGCAGCAGGAACAAAGATTCGATGAGGATCGAGGGCATATCTCTTCAAACAATGATCAGAGTGCAACTAGTAGTTTTTGCAATGGCAATGCAAGTCATCTGAATAGCATGGGGTATGGAAGTGCTTGTGGAAGTAGCAACGTTGATCACGCGGCTATGTTCAGGGCTGCTCCAGAGAGCAAGAATGAAGACAGTTTCTTTAATCACAGTGGAAATAATCGATCCATCCAAAGAGAAGCAGCTCTCAACAAGTTCCGGTTGAAGAGGAAAGATAGATGCTACGAGAAGAAGGTTCGTTACGAGAGCAGAAAGAAGCTTGCAGAGCAGCGTCCAAGAATAAAGGGACAATTTGTTCGTCAAGTGCTTAATGATCCTTCACATATGGAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

676

Amino Acids

75.17

Weight (kDa)

6.77

Isoelectric Point (pI)

65.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	52 - 163	3.6e-22	Response regulator receiver domain
CCT	PF06203	624 - 666	7.5e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24470
fragaria_vesca	FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920 FvH4_7g32920
malus_domestica	MD01G1228200.v1.1 MD07G1299100.v1.1
prunus_persica	Prupe.2G318900_v2.0.a1
pyrus_communis	pycom01g23650 pycom07g27150 pycom07g27160
rosa_chinensis	RchiOBHm_Chr1g0382871
rosa_laevigata	RLG00000026152
rosa_multiflora	Rmu_sc0002242.1_g000013 Rmu_sc0010366.1_g000006
rosa_roxburghii	Rroxscaffold_4G00277820
rosa_rugosa	Rorug01G0437000
rosa_samantha	Rh1AG462000 Rh1BG419000 Rh1CG432700 Rh1DG451100 Rh4BG143700 Rh4BG143800 Rh4DG139500
rosa_wichuraiana	Rw1G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AccII	CGCG	1 cut(s)	1790
AciI	CCGC	3 cut(s)	90, 1070, 1790
AclI	AACGTT	1 cut(s)	1779
AclWI	GGATC	4 cut(s)	1086, 1674, 1854, 2003
AcsI	RAATTY	3 cut(s)	725, 751, 1204
AcuI	CTGAAG	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	881
AfaI	GTAC	8 cut(s)	61, 574, 679, 1054, 1453, 1458, 1543, 1589
AfiI	CCNNNNNNNGG	1 cut(s)	1415
AflII	CTTAAG	1 cut(s)	766
AgsI	TTSAA	8 cut(s)	569, 650, 695, 969, 1308, 1565, 1686, 1900
AhlI	ACTAGT	1 cut(s)	1706
AjnI	CCWGG	2 cut(s)	136, 895
AjuI	GAANNNNNNNTTGG	2 cut(s)	1489, 1521
AloI	GAACNNNNNNTCC	2 cut(s)	1974, 2006
Alw21I	GWGCWC	3 cut(s)	628, 674, 709
Alw26I	GTCTC	2 cut(s)	505, 1109
AlwI	GGATC	4 cut(s)	1086, 1674, 1854, 2003
AoxI	GGCC	3 cut(s)	849, 1046, 1147
ApoI	RAATTY	3 cut(s)	725, 751, 1204
ArsI	GACNNNNNNTTYG	2 cut(s)	1974, 2006
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspS9I	GGNCC	3 cut(s)	276, 839, 1147
AsuHPI	GGTGA	6 cut(s)	17, 28, 104, 893, 970, 1485
AvaII	GGWCC	2 cut(s)	276, 839
BanII	GRGCYC	1 cut(s)	674
BarI	GAAGNNNNNNTAC	2 cut(s)	1919, 1951
BbsI	GAAGAC	1 cut(s)	1833
Bbv12I	GWGCWC	3 cut(s)	628, 674, 709
BbvCI	CCTCAGC	2 cut(s)	1162, 1380
BccI	CCATC	6 cut(s)	236, 295, 325, 1498, 1615, 1871
BciT130I	CCWGG	2 cut(s)	138, 897
BclI	TGATCA	2 cut(s)	1693, 1783
BcoDI	GTCTC	2 cut(s)	505, 1109
BcuI	ACTAGT	1 cut(s)	1706
BfaI	CTAG	3 cut(s)	878, 1050, 1707
BfmI	CTRYAG	1 cut(s)	220
BfrI	CTTAAG	1 cut(s)	766
BglII	AGATCT	2 cut(s)	310, 363
Bme1390I	CCNGG	2 cut(s)	138, 897
Bme18I	GGWCC	2 cut(s)	276, 839
BmgT120I	GGNCC	3 cut(s)	276, 839, 1147
BmiI	GGNNCC	1 cut(s)	1524
BmrFI	CCNGG	2 cut(s)	138, 897
BmsI	GCATC	4 cut(s)	577, 904, 1274, 1904
BpiI	GAAGAC	1 cut(s)	1833
BpmI	CTGGAG	1 cut(s)	1794
Bpu10I	CCTNAGC	3 cut(s)	206, 1162, 1380
BpuEI	CTTGAG	1 cut(s)	1104
Bsa29I	ATCGAT	1 cut(s)	1858
BsaBI	GATNNNNATC	2 cut(s)	948, 1665
BsaJI	CCNNGG	2 cut(s)	1316, 1611
BsaWI	WCCGGW	1 cut(s)	1893
Bsc4I	CCNNNNNNNGG	1 cut(s)	1415
Bse1I	ACTGG	4 cut(s)	606, 1104, 1219, 1345
Bse3DI	GCAATG	4 cut(s)	1190, 1447, 1726, 1732
Bse8I	GATNNNNATC	2 cut(s)	948, 1665
BseBI	CCWGG	2 cut(s)	138, 897
BseCI	ATCGAT	1 cut(s)	1858
BseDI	CCNNGG	2 cut(s)	1316, 1611
BseGI	GGATG	4 cut(s)	766, 919, 1265, 1863
BseJI	GATNNNNATC	2 cut(s)	948, 1665
BseLI	CCNNNNNNNGG	1 cut(s)	1415
BseMI	GCAATG	4 cut(s)	1190, 1447, 1726, 1732
BseNI	ACTGG	4 cut(s)	606, 1104, 1219, 1345
BseRI	GAGGAG	1 cut(s)	523
BseYI	CCCAGC	2 cut(s)	1515, 1594
Bsh1236I	CGCG	1 cut(s)	1790
BshFI	GGCC	3 cut(s)	851, 1048, 1149
BshVI	ATCGAT	1 cut(s)	1858
BsiHKAI	GWGCWC	3 cut(s)	628, 674, 709
BsiSI	CCGG	1 cut(s)	1894
BslFI	GGGAC	2 cut(s)	670, 1995
BslI	CCNNNNNNNGG	1 cut(s)	1415
BsmAI	GTCTC	2 cut(s)	505, 1109
BsmFI	GGGAC	2 cut(s)	670, 1995
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	3 cut(s)	851, 1048, 1149
Bsp1286I	GDGCHC	3 cut(s)	628, 674, 709
Bsp1407I	TGTACA	1 cut(s)	677
BspACI	CCGC	3 cut(s)	90, 1070, 1790
BspANI	GGCC	3 cut(s)	851, 1048, 1149
BspDI	ATCGAT	1 cut(s)	1858
BspFNI	CGCG	1 cut(s)	1790
BspLI	GGNNCC	1 cut(s)	1524
BspPI	GGATC	4 cut(s)	1086, 1674, 1854, 2003
BspTI	CTTAAG	1 cut(s)	766
BsrDI	GCAATG	4 cut(s)	1190, 1447, 1726, 1732
BsrGI	TGTACA	1 cut(s)	677
BsrI	ACTGG	4 cut(s)	606, 1104, 1219, 1345
BssECI	CCNNGG	2 cut(s)	1316, 1611
BssT1I	CCWWGG	2 cut(s)	1316, 1611
Bst2UI	CCWGG	2 cut(s)	138, 897
Bst4CI	ACNGT	6 cut(s)	418, 1286, 1456, 1482, 1832, 1847
Bst6I	CTCTTC	4 cut(s)	970, 1036, 1687, 1895
BstAFI	CTTAAG	1 cut(s)	766
BstAUI	TGTACA	1 cut(s)	677
BstC8I	GCNNGC	3 cut(s)	595, 1263, 1956
BstENI	CCTNNNNNAGG	1 cut(s)	1413
BstF5I	GGATG	4 cut(s)	766, 919, 1265, 1863
BstFNI	CGCG	1 cut(s)	1790
BstMAI	GTCTC	2 cut(s)	505, 1109
BstMWI	GCNNNNNNNGC	3 cut(s)	704, 1642, 1960
BstNI	CCWGG	2 cut(s)	138, 897
BstNSI	RCATGY	3 cut(s)	503, 624, 1586
BstSCI	CCNGG	2 cut(s)	136, 895
BstSFI	CTRYAG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	1790
BstV2I	GAAGAC	1 cut(s)	1833
BstX2I	RGATCY	3 cut(s)	310, 363, 1078
BstYI	RGATCY	3 cut(s)	310, 363, 1078
Bsu15I	ATCGAT	1 cut(s)	1858
BsuRI	GGCC	3 cut(s)	851, 1048, 1149
BsuTUI	ATCGAT	1 cut(s)	1858
BtgZI	GCGATG	1 cut(s)	1634
BtsCI	GGATG	4 cut(s)	766, 919, 1265, 1863
BtsI	GCAGTG	1 cut(s)	852
BtsIMutI	CAGTG	4 cut(s)	613, 852, 1111, 1852
Cac8I	GCNNGC	3 cut(s)	595, 1263, 1956
Cfr13I	GGNCC	3 cut(s)	276, 839, 1147
ClaI	ATCGAT	1 cut(s)	1858
CseI	GACGC	1 cut(s)	1955
Csp6I	GTAC	8 cut(s)	60, 573, 678, 1053, 1452, 1457, 1542, 1588
CviQI	GTAC	8 cut(s)	60, 573, 678, 1053, 1452, 1457, 1542, 1588
DraIII	CACNNNGTG	1 cut(s)	881
Eam1104I	CTCTTC	4 cut(s)	970, 1036, 1687, 1895
EarI	CTCTTC	4 cut(s)	970, 1036, 1687, 1895
Ecl136II	GAGCTC	1 cut(s)	672
Eco130I	CCWWGG	2 cut(s)	1316, 1611
Eco147I	AGGCCT	1 cut(s)	1048
Eco24I	GRGCYC	1 cut(s)	674
Eco47I	GGWCC	2 cut(s)	276, 839
Eco53kI	GAGCTC	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	672
EcoNI	CCTNNNNNAGG	1 cut(s)	1413
EcoRI	GAATTC	1 cut(s)	1204
EcoRII	CCWGG	2 cut(s)	136, 895
EcoT14I	CCWWGG	2 cut(s)	1316, 1611
EcoT22I	ATGCAT	2 cut(s)	431, 822
EcoT38I	GRGCYC	1 cut(s)	674
ErhI	CCWWGG	2 cut(s)	1316, 1611
FaqI	GGGAC	2 cut(s)	670, 1995
FauNDI	CATATG	2 cut(s)	1057, 2019
FbaI	TGATCA	2 cut(s)	1693, 1783
FokI	GGATG	4 cut(s)	773, 926, 1252, 1850
FriOI	GRGCYC	1 cut(s)	674
FspBI	CTAG	3 cut(s)	878, 1050, 1707
GsaI	CCCAGC	2 cut(s)	1519, 1598
GsuI	CTGGAG	1 cut(s)	1794
HaeIII	GGCC	3 cut(s)	851, 1048, 1149
HapII	CCGG	1 cut(s)	1894
HgaI	GACGC	1 cut(s)	1955
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HindIII	AAGCTT	2 cut(s)	516, 1952
HinfI	GANTC	8 cut(s)	95, 176, 404, 662, 1061, 1100, 1117, 1656
HpaII	CCGG	1 cut(s)	1894
HphI	GGTGA	6 cut(s)	17, 28, 104, 893, 970, 1485
Hpy166II	GTNNAC	3 cut(s)	421, 961, 1588
Hpy188III	TCNNGA	7 cut(s)	208, 327, 401, 758, 969, 1173, 1811
Hpy8I	GTNNAC	3 cut(s)	421, 961, 1588
HpyAV	CCTTC	5 cut(s)	262, 563, 779, 1921, 2022
HpyCH4III	ACNGT	6 cut(s)	418, 1286, 1456, 1482, 1832, 1847
HpyCH4IV	ACGT	2 cut(s)	1370, 1779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	704, 1642, 1960
HpySE526I	ACGT	2 cut(s)	1370, 1779
Ksp22I	TGATCA	2 cut(s)	1693, 1783
LmnI	GCTCC	5 cut(s)	355, 712, 877, 1072, 1813
LweI	GCATC	4 cut(s)	577, 904, 1274, 1904
MaeI	CTAG	3 cut(s)	878, 1050, 1707
MaeII	ACGT	2 cut(s)	1370, 1779
MaeIII	GTNAC	4 cut(s)	92, 976, 1123, 1934
MfeI	CAATTG	1 cut(s)	796
MflI	RGATCY	3 cut(s)	310, 363, 1078
MhlI	GDGCHC	3 cut(s)	628, 674, 709
MluCI	AATT	9 cut(s)	465, 725, 751, 796, 1011, 1204, 1362, 1606, 1985
MlyI	GAGTC	3 cut(s)	89, 170, 1111
MmeI	TCCRAC	5 cut(s)	471, 532, 1056, 1490, 1577
Mph1103I	ATGCAT	2 cut(s)	431, 822
MroXI	GAANNNNTTC	1 cut(s)	1030
MseI	TTAA	9 cut(s)	248, 411, 459, 767, 1275, 1413, 1428, 1839, 2004
MslI	CAYNNNNRTG	3 cut(s)	299, 606, 825
MspA1I	CMGCKG	1 cut(s)	1511
MspCI	CTTAAG	1 cut(s)	766
MspI	CCGG	1 cut(s)	1894
MspR9I	CCNGG	2 cut(s)	138, 897
MunI	CAATTG	1 cut(s)	796
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	2 cut(s)	138, 897
MvnI	CGCG	1 cut(s)	1790
MwoI	GCNNNNNNNGC	3 cut(s)	704, 1642, 1960
NdeI	CATATG	2 cut(s)	1057, 2019
NlaIV	GGNNCC	1 cut(s)	1524
NmuCI	GTSAC	2 cut(s)	92, 976
NsiI	ATGCAT	2 cut(s)	431, 822
NspI	RCATGY	3 cut(s)	503, 624, 1586
PceI	AGGCCT	1 cut(s)	1048
PctI	GAATGC	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	5 cut(s)	404, 662, 1061, 1100, 1656
PleI	GAGTC	3 cut(s)	89, 170, 1111
PpsI	GAGTC	3 cut(s)	89, 170, 1111
PsiI	TTATAA	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	674
Psp1406I	AACGTT	1 cut(s)	1779
Psp6I	CCWGG	2 cut(s)	136, 895
PspFI	CCCAGC	2 cut(s)	1515, 1594
PspGI	CCWGG	2 cut(s)	136, 895
PspN4I	GGNNCC	1 cut(s)	1524
PspPI	GGNCC	3 cut(s)	276, 839, 1147
PsuI	RGATCY	3 cut(s)	310, 363, 1078
PvuII	CAGCTG	1 cut(s)	1511
RsaI	GTAC	8 cut(s)	61, 574, 679, 1054, 1453, 1458, 1543, 1589
RsaNI	GTAC	8 cut(s)	60, 573, 678, 1053, 1452, 1457, 1542, 1588
RseI	CAYNNNNRTG	3 cut(s)	299, 606, 825
SacI	GAGCTC	1 cut(s)	674
SaqAI	TTAA	9 cut(s)	248, 411, 459, 767, 1275, 1413, 1428, 1839, 2004
Sau96I	GGNCC	3 cut(s)	276, 839, 1147
SchI	GAGTC	3 cut(s)	89, 170, 1111
ScrFI	CCNGG	2 cut(s)	138, 897
SduI	GDGCHC	3 cut(s)	628, 674, 709
SfaNI	GCATC	4 cut(s)	577, 904, 1274, 1904
SfcI	CTRYAG	1 cut(s)	220
SinI	GGWCC	2 cut(s)	276, 839
SmiMI	CAYNNNNRTG	3 cut(s)	299, 606, 825
SmlI	CTYRAG	2 cut(s)	766, 1119
SmoI	CTYRAG	2 cut(s)	766, 1119
SpeI	ACTAGT	1 cut(s)	1706
Sse9I	AATT	9 cut(s)	465, 725, 751, 796, 1011, 1204, 1362, 1606, 1985
SseBI	AGGCCT	1 cut(s)	1048
SsiI	CCGC	3 cut(s)	90, 1070, 1790
SspMI	CTAG	3 cut(s)	878, 1050, 1707
SstI	GAGCTC	1 cut(s)	674
StuI	AGGCCT	1 cut(s)	1048
StyD4I	CCNGG	2 cut(s)	136, 895
StyI	CCWWGG	2 cut(s)	1316, 1611
TaaI	ACNGT	6 cut(s)	418, 1286, 1456, 1482, 1832, 1847
TaiI	ACGT	2 cut(s)	1373, 1782
TaqI	TCGA	4 cut(s)	407, 1659, 1669, 1858
TasI	AATT	9 cut(s)	465, 725, 751, 796, 1011, 1204, 1362, 1606, 1985
TatI	WGTACW	5 cut(s)	59, 677, 1052, 1456, 1541
TauI	GCSGC	1 cut(s)	1793
TfiI	GAWTC	5 cut(s)	404, 662, 1061, 1100, 1656
Tru1I	TTAA	9 cut(s)	248, 411, 459, 767, 1275, 1413, 1428, 1839, 2004
Tru9I	TTAA	9 cut(s)	248, 411, 459, 767, 1275, 1413, 1428, 1839, 2004
TscAI	CASTG	4 cut(s)	613, 852, 1111, 1852
TseFI	GTSAC	2 cut(s)	92, 976
Tsp45I	GTSAC	2 cut(s)	92, 976
TspDTI	ATGAA	9 cut(s)	83, 158, 492, 798, 837, 843, 1023, 1197, 1839
TspRI	CASTG	4 cut(s)	613, 852, 1111, 1852
Vha464I	CTTAAG	1 cut(s)	766
VpaK11BI	GGWCC	2 cut(s)	276, 839
XagI	CCTNNNNNAGG	1 cut(s)	1413
XapI	RAATTY	3 cut(s)	725, 751, 1204
XceI	RCATGY	3 cut(s)	503, 624, 1586
XcmI	CCANNNNNNNNNTGG	2 cut(s)	613, 1618
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	3 cut(s)	878, 1050, 1707
Zsp2I	ATGCAT	2 cut(s)	431, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.