RchiOBHm_Chr1g0382871

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
67470339 .. 67474553
4215 bp
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UTR
Exon/CDS
Intron
PRQ60581

Sequence Viewer

Length: 2052 bp
ATGGGTGAGGTTGTGGTGAGTAGTGAGGAAATGAGAACAGAGAGTGAGAAGCAGAGAAGTACAGAGATGAAGAACAATGGCGGAGGTGGCGGTGACTCATCAAGTGGGGTTGTGATGAGGTGGGAGAAGCTCTTGCCTGGAATGAACATGAGGGTCTTGTTGGTTGAGGCTGATGACTCCACAAGGCATATTATAGCTGCTTTGCTCAGGAAATGTAGCTATAGAGTTGCTGCTGTACCTGATGGCTTAAAGGCATGGGAAATACTGAAGGCAAGGTCTGATAAGATAGACCTCATACTGATGGAAGTAGATCTGCCATCAATATCTGGATTTGCTCTGCTTACACTAATCATGGAGCATGAGATCTGCAAAAACATTCCTGTTATAATGATGTCCTCTCAGGATTCGATTAACACAGTTTACAAATGCATGACAAGAGGTGTTTCCGACTATCTTGTTAAGCCGATTAGGAAGAATGAACTGAGAAACCTGTGGCAGCATGTTTGGAGGAGACAAGCTTTAGCCAGAAATATCCCACAAGATGAGAGTGTTGGACAAGAAAAGATTGAAGGTACATCTGATAATGATGCTGCAAGCAATCATTCCAGTGGCTATGTGGCATGTGCTCAGAGGAATAAGGAAGACATTGAAAAAGGGACTGATTCTCAGAGCTCTTGTACAAGGCCAGATTTTGAAGCTGAGAGTGCTCCTGTGGATATGCAGGAATTTTCGCAGCAGATACAGGCTAAAAATTTTCTGGATGACTTAAGAATGCAGAAAGATGAAGGGAACACCAATTGTAGTGAAAAGTTGCTTATGCATGAAAATGAATCCAGAGGACCAGCAGTGAATGCCTACAAGGGCAAGTTAGCAGCTCCACTAGGTGAGGTTGCCAAGCAAGGTAGTCATAGGAGGGATGCTAATATGGATAGTGAGGCTTGTGATGATAACGATCTCCTTGTCAACTCTTCAAGAAATGTCACCGACTTCTTTGGGGTATGCAGTAGTTATCCAATTAGCAATCTCAGAAACTCTTCATCAAGTAATAGGCCTAGTACATATGATTCTACTCCGCCGTTGGATCTTTCTTTGAGAAGATCAGATTCCAGTGGCATTGAGACTCAAGTTACTGAAAAAAGGCATACTCTGGGCCATTCTAACGCCTCAGCATTTTCACGATACATCAACAGACCATTGCAGCCCCAGAATCCATTGACTGGCATAAACGATCAACAAAAGGCATACCAAACTACATCTGAGAAGCCTGCATCCCCTGTTAATATGGATTGTGATACCCCTGCTGCTACTTCAAGTATTCCAAGGAGTGTCATCACTGTAGCTACTGGTCAGTCTAACCAGTCTGAAATTGGAACGTCATGCCCTCAGCAGAGATTATTTCCTCTTCCTGTTCCCATTAAAGGTGTAAGGTTTAACAACCTTTGCAATGGGTATGGTACTGTACTGCCTCCAACCTTTTGCACACAGTCAAGTCCATCACCAATGCCAAGTTCAGCTGCCCAGCAGGAACCCTCATTTCTAATGAGTACATTTTATCCGACTAATCTTCAAAACCATAAACCAGAGCATGTGTACGACCCAGCTTATCATAATTCCAAGGTTGCGATGGAACAGACAATGCAGCAGCAGGAACAAAGATTCGATGAGGATCGAGGGCATATCTCTTCAAACAATGATCAGAGTGCAACTAGTAGTTTTTGCAATGGCAATGCAAGTCATCTGAATAGCCTGGGGTATGGAAGTGCTTGTGGAAGTAACAACGTTGATCAGGTGGCTATGTTCAGGGCTGCTCCAGAGAGCAAGAATGAAGACAGTGTCTTTAATCACAGTGGAAATAATCGATCCATCCAAAGAGAAGCAGCTCTCAACAAGTTCCGGTTGAAGAGGAAAGATAGATGCTACGAGAAGAAGGTTCGCTACGAGAGCAGAAAGAAGCTTGCAGAGCAGCGTCCAAGAATAAAGGGACAATTTGTTCGTCAAGTGCTTAATGATCCTTCACATATGGAAGCTGAGGGCAATGCATATGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

683

Amino Acids

75.94

Weight (kDa)

6.25

Isoelectric Point (pI)

63.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 52 - 163 4.2e-22 Response regulator receiver domain
CCT PF06203 624 - 666 7.6e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 1217
AciI CCGC 3 cut(s) 81, 90, 1073
AclI AACGTT 1 cut(s) 1779
AclWI GGATC 4 cut(s) 1089, 1674, 1854, 2003
AcsI RAATTY 2 cut(s) 725, 751
AcuI CTGAAG 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 884
AfaI GTAC 9 cut(s) 61, 237, 574, 679, 1057, 1456, 1461, 1546, 1592
AfiI CCNNNNNNNGG 2 cut(s) 1217, 1418
AflII CTTAAG 1 cut(s) 766
AgsI TTSAA 8 cut(s) 569, 650, 695, 972, 1311, 1568, 1686, 1900
AhlI ACTAGT 1 cut(s) 1706
AjnI CCWGG 2 cut(s) 136, 1746
AjuI GAANNNNNNNTTGG 2 cut(s) 1492, 1524
AloI GAACNNNNNNTCC 2 cut(s) 1974, 2006
Alw21I GWGCWC 3 cut(s) 628, 674, 709
Alw26I GTCTC 2 cut(s) 505, 1112
AlwI GGATC 4 cut(s) 1089, 1674, 1854, 2003
AoxI GGCC 3 cut(s) 683, 1049, 1150
ApoI RAATTY 2 cut(s) 725, 751
ArsI GACNNNNNNTTYG 2 cut(s) 1974, 2006
Asp700I GAANNNNTTC 1 cut(s) 1033
AspS9I GGNCC 2 cut(s) 839, 1150
AsuHPI GGTGA 6 cut(s) 17, 28, 104, 896, 973, 1488
AvaII GGWCC 1 cut(s) 839
BanII GRGCYC 1 cut(s) 674
BarI GAAGNNNNNNTAC 2 cut(s) 1919, 1951
BbsI GAAGAC 2 cut(s) 648, 1833
Bbv12I GWGCWC 3 cut(s) 628, 674, 709
BbvCI CCTCAGC 3 cut(s) 1165, 1383, 2028
BccI CCATC 6 cut(s) 236, 295, 325, 1501, 1618, 1871
BceAI ACGGC 1 cut(s) 1060
BciT130I CCWGG 2 cut(s) 138, 1748
BclI TGATCA 2 cut(s) 1693, 1783
BcoDI GTCTC 2 cut(s) 505, 1112
BcuI ACTAGT 1 cut(s) 1706
BfaI CTAG 3 cut(s) 881, 1053, 1707
BfmI CTRYAG 2 cut(s) 220, 1335
BfrI CTTAAG 1 cut(s) 766
BglII AGATCT 2 cut(s) 310, 363
Bme1390I CCNGG 2 cut(s) 138, 1748
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 2 cut(s) 839, 1150
BmiI GGNNCC 1 cut(s) 1527
BmrFI CCNGG 2 cut(s) 138, 1748
BmsI GCATC 4 cut(s) 577, 907, 1277, 1904
BpiI GAAGAC 2 cut(s) 648, 1833
BpmI CTGGAG 1 cut(s) 1794
Bpu10I CCTNAGC 4 cut(s) 206, 1165, 1383, 2028
BpuEI CTTGAG 1 cut(s) 1107
Bsa29I ATCGAT 1 cut(s) 1858
BsaBI GATNNNNATC 2 cut(s) 951, 1665
BsaJI CCNNGG 3 cut(s) 1319, 1614, 1747
BsaWI WCCGGW 1 cut(s) 1893
Bsc4I CCNNNNNNNGG 2 cut(s) 1217, 1418
Bse1I ACTGG 5 cut(s) 606, 1107, 1222, 1348, 1357
Bse3DI GCAATG 5 cut(s) 1193, 1450, 1726, 1732, 2041
Bse8I GATNNNNATC 2 cut(s) 951, 1665
BseBI CCWGG 2 cut(s) 138, 1748
BseCI ATCGAT 1 cut(s) 1858
BseDI CCNNGG 3 cut(s) 1319, 1614, 1747
BseGI GGATG 4 cut(s) 766, 922, 1268, 1863
BseJI GATNNNNATC 2 cut(s) 951, 1665
BseLI CCNNNNNNNGG 2 cut(s) 1217, 1418
BseMI GCAATG 5 cut(s) 1193, 1450, 1726, 1732, 2041
BseNI ACTGG 5 cut(s) 606, 1107, 1222, 1348, 1357
BseRI GAGGAG 1 cut(s) 523
BseYI CCCAGC 2 cut(s) 1518, 1597
BshFI GGCC 3 cut(s) 685, 1051, 1152
BshVI ATCGAT 1 cut(s) 1858
BsiHKAI GWGCWC 3 cut(s) 628, 674, 709
BsiSI CCGG 1 cut(s) 1894
BslFI GGGAC 2 cut(s) 670, 1995
BslI CCNNNNNNNGG 2 cut(s) 1217, 1418
BsmAI GTCTC 2 cut(s) 505, 1112
BsmFI GGGAC 2 cut(s) 670, 1995
BsmI GAATGC 2 cut(s) 777, 856
BsnI GGCC 3 cut(s) 685, 1051, 1152
Bsp1286I GDGCHC 3 cut(s) 628, 674, 709
Bsp1407I TGTACA 1 cut(s) 677
BspACI CCGC 3 cut(s) 81, 90, 1073
BspANI GGCC 3 cut(s) 685, 1051, 1152
BspDI ATCGAT 1 cut(s) 1858
BspLI GGNNCC 1 cut(s) 1527
BspPI GGATC 4 cut(s) 1089, 1674, 1854, 2003
BspTI CTTAAG 1 cut(s) 766
BsrDI GCAATG 5 cut(s) 1193, 1450, 1726, 1732, 2041
BsrGI TGTACA 1 cut(s) 677
BsrI ACTGG 5 cut(s) 606, 1107, 1222, 1348, 1357
BssECI CCNNGG 3 cut(s) 1319, 1614, 1747
BssT1I CCWWGG 2 cut(s) 1319, 1614
Bst2UI CCWGG 2 cut(s) 138, 1748
Bst4CI ACNGT 6 cut(s) 418, 1336, 1459, 1485, 1832, 1847
Bst6I CTCTTC 5 cut(s) 973, 1039, 1407, 1687, 1895
BstAFI CTTAAG 1 cut(s) 766
BstAPI GCANNNNNTGC 1 cut(s) 851
BstAUI TGTACA 1 cut(s) 677
BstC8I GCNNGC 3 cut(s) 595, 1266, 1956
BstF5I GGATG 4 cut(s) 766, 922, 1268, 1863
BstMAI GTCTC 2 cut(s) 505, 1112
BstMWI GCNNNNNNNGC 5 cut(s) 87, 704, 851, 1941, 1960
BstNI CCWGG 2 cut(s) 138, 1748
BstNSI RCATGY 3 cut(s) 503, 624, 1589
BstSCI CCNGG 2 cut(s) 136, 1746
BstSFI CTRYAG 2 cut(s) 220, 1335
BstV2I GAAGAC 2 cut(s) 648, 1833
BstX2I RGATCY 3 cut(s) 310, 363, 1081
BstYI RGATCY 3 cut(s) 310, 363, 1081
Bsu15I ATCGAT 1 cut(s) 1858
BsuRI GGCC 3 cut(s) 685, 1051, 1152
BsuTUI ATCGAT 1 cut(s) 1858
BtgZI GCGATG 1 cut(s) 1637
BtsCI GGATG 4 cut(s) 766, 922, 1268, 1863
BtsI GCAGTG 1 cut(s) 852
BtsIMutI CAGTG 6 cut(s) 613, 852, 1114, 1332, 1837, 1852
Cac8I GCNNGC 3 cut(s) 595, 1266, 1956
Cfr13I GGNCC 2 cut(s) 839, 1150
ClaI ATCGAT 1 cut(s) 1858
CseI GACGC 1 cut(s) 1955
Csp6I GTAC 9 cut(s) 60, 236, 573, 678, 1056, 1455, 1460, 1545, 1591
CviQI GTAC 9 cut(s) 60, 236, 573, 678, 1056, 1455, 1460, 1545, 1591
DraIII CACNNNGTG 1 cut(s) 884
Eam1104I CTCTTC 5 cut(s) 973, 1039, 1407, 1687, 1895
EarI CTCTTC 5 cut(s) 973, 1039, 1407, 1687, 1895
EciI GGCGGA 2 cut(s) 96, 1062
Ecl136II GAGCTC 1 cut(s) 672
Eco130I CCWWGG 2 cut(s) 1319, 1614
Eco147I AGGCCT 1 cut(s) 1051
Eco24I GRGCYC 1 cut(s) 674
Eco47I GGWCC 1 cut(s) 839
Eco53kI GAGCTC 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 672
EcoRII CCWGG 2 cut(s) 136, 1746
EcoT14I CCWWGG 2 cut(s) 1319, 1614
EcoT22I ATGCAT 3 cut(s) 431, 822, 2041
EcoT38I GRGCYC 1 cut(s) 674
ErhI CCWWGG 2 cut(s) 1319, 1614
FaqI GGGAC 2 cut(s) 670, 1995
FauNDI CATATG 3 cut(s) 1060, 2019, 2041
FbaI TGATCA 2 cut(s) 1693, 1783
FokI GGATG 4 cut(s) 773, 929, 1255, 1850
FriOI GRGCYC 1 cut(s) 674
FspBI CTAG 3 cut(s) 881, 1053, 1707
GsaI CCCAGC 2 cut(s) 1522, 1601
GsuI CTGGAG 1 cut(s) 1794
HaeIII GGCC 3 cut(s) 685, 1051, 1152
HapII CCGG 1 cut(s) 1894
HgaI GACGC 1 cut(s) 1955
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HindIII AAGCTT 2 cut(s) 516, 1952
HpaII CCGG 1 cut(s) 1894
HphI GGTGA 6 cut(s) 17, 28, 104, 896, 973, 1488
Hpy166II GTNNAC 3 cut(s) 421, 964, 1591
Hpy188III TCNNGA 8 cut(s) 208, 327, 401, 758, 834, 972, 1176, 1811
Hpy8I GTNNAC 3 cut(s) 421, 964, 1591
HpyAV CCTTC 5 cut(s) 262, 563, 779, 1921, 2022
HpyCH4III ACNGT 6 cut(s) 418, 1336, 1459, 1485, 1832, 1847
HpyCH4IV ACGT 2 cut(s) 1373, 1779
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 704, 851, 1941, 1960
HpySE526I ACGT 2 cut(s) 1373, 1779
Ksp22I TGATCA 2 cut(s) 1693, 1783
LmnI GCTCC 4 cut(s) 355, 712, 880, 1813
LweI GCATC 4 cut(s) 577, 907, 1277, 1904
MaeI CTAG 3 cut(s) 881, 1053, 1707
MaeII ACGT 2 cut(s) 1373, 1779
MaeIII GTNAC 4 cut(s) 92, 979, 1126, 1772
MfeI CAATTG 1 cut(s) 796
MflI RGATCY 3 cut(s) 310, 363, 1081
MhlI GDGCHC 3 cut(s) 628, 674, 709
MluCI AATT 7 cut(s) 725, 751, 796, 1014, 1365, 1609, 1985
MlyI GAGTC 3 cut(s) 89, 170, 1114
MmeI TCCRAC 5 cut(s) 471, 532, 1059, 1493, 1580
Mph1103I ATGCAT 3 cut(s) 431, 822, 2041
MroXI GAANNNNTTC 1 cut(s) 1033
MseI TTAA 9 cut(s) 248, 411, 459, 767, 1278, 1416, 1431, 1839, 2004
MslI CAYNNNNRTG 3 cut(s) 299, 606, 825
MspA1I CMGCKG 1 cut(s) 1514
MspCI CTTAAG 1 cut(s) 766
MspI CCGG 1 cut(s) 1894
MspR9I CCNGG 2 cut(s) 138, 1748
MunI CAATTG 1 cut(s) 796
Mva1269I GAATGC 2 cut(s) 777, 856
MvaI CCWGG 2 cut(s) 138, 1748
MwoI GCNNNNNNNGC 5 cut(s) 87, 704, 851, 1941, 1960
NdeI CATATG 3 cut(s) 1060, 2019, 2041
NlaIV GGNNCC 1 cut(s) 1527
NmuCI GTSAC 2 cut(s) 92, 979
NsiI ATGCAT 3 cut(s) 431, 822, 2041
NspI RCATGY 3 cut(s) 503, 624, 1589
PceI AGGCCT 1 cut(s) 1051
PctI GAATGC 2 cut(s) 777, 856
PdmI GAANNNNTTC 1 cut(s) 1033
PfeI GAWTC 7 cut(s) 404, 662, 830, 1064, 1103, 1207, 1656
PflFI GACNNNGTC 1 cut(s) 1832
PflMI CCANNNNNTGG 1 cut(s) 1217
PleI GAGTC 3 cut(s) 89, 170, 1114
PpsI GAGTC 3 cut(s) 89, 170, 1114
PsiI TTATAA 1 cut(s) 386
Psp124BI GAGCTC 1 cut(s) 674
Psp1406I AACGTT 1 cut(s) 1779
Psp6I CCWGG 2 cut(s) 136, 1746
PspFI CCCAGC 2 cut(s) 1518, 1597
PspGI CCWGG 2 cut(s) 136, 1746
PspN4I GGNNCC 1 cut(s) 1527
PspPI GGNCC 2 cut(s) 839, 1150
PsuI RGATCY 3 cut(s) 310, 363, 1081
PsyI GACNNNGTC 1 cut(s) 1832
PvuII CAGCTG 1 cut(s) 1514
RsaI GTAC 9 cut(s) 61, 237, 574, 679, 1057, 1456, 1461, 1546, 1592
RsaNI GTAC 9 cut(s) 60, 236, 573, 678, 1056, 1455, 1460, 1545, 1591
RseI CAYNNNNRTG 3 cut(s) 299, 606, 825
SacI GAGCTC 1 cut(s) 674
SaqAI TTAA 9 cut(s) 248, 411, 459, 767, 1278, 1416, 1431, 1839, 2004
Sau96I GGNCC 2 cut(s) 839, 1150
SchI GAGTC 3 cut(s) 89, 170, 1114
ScrFI CCNGG 2 cut(s) 138, 1748
SduI GDGCHC 3 cut(s) 628, 674, 709
SfaNI GCATC 4 cut(s) 577, 907, 1277, 1904
SfcI CTRYAG 2 cut(s) 220, 1335
SinI GGWCC 1 cut(s) 839
SmiMI CAYNNNNRTG 3 cut(s) 299, 606, 825
SmlI CTYRAG 2 cut(s) 766, 1122
SmoI CTYRAG 2 cut(s) 766, 1122
SpeI ACTAGT 1 cut(s) 1706
Sse9I AATT 7 cut(s) 725, 751, 796, 1014, 1365, 1609, 1985
SseBI AGGCCT 1 cut(s) 1051
SsiI CCGC 3 cut(s) 81, 90, 1073
SspMI CTAG 3 cut(s) 881, 1053, 1707
SstI GAGCTC 1 cut(s) 674
StuI AGGCCT 1 cut(s) 1051
StyD4I CCNGG 2 cut(s) 136, 1746
StyI CCWWGG 2 cut(s) 1319, 1614
TaaI ACNGT 6 cut(s) 418, 1336, 1459, 1485, 1832, 1847
TaiI ACGT 2 cut(s) 1376, 1782
TaqI TCGA 4 cut(s) 407, 1659, 1669, 1858
TasI AATT 7 cut(s) 725, 751, 796, 1014, 1365, 1609, 1985
TatI WGTACW 5 cut(s) 59, 677, 1055, 1459, 1544
TfiI GAWTC 7 cut(s) 404, 662, 830, 1064, 1103, 1207, 1656
Tru1I TTAA 9 cut(s) 248, 411, 459, 767, 1278, 1416, 1431, 1839, 2004
Tru9I TTAA 9 cut(s) 248, 411, 459, 767, 1278, 1416, 1431, 1839, 2004
TscAI CASTG 6 cut(s) 613, 852, 1114, 1339, 1837, 1852
TseFI GTSAC 2 cut(s) 92, 979
Tsp45I GTSAC 2 cut(s) 92, 979
TspDTI ATGAA 8 cut(s) 83, 158, 492, 798, 837, 843, 1026, 1839
TspRI CASTG 6 cut(s) 613, 852, 1114, 1339, 1837, 1852
Tth111I GACNNNGTC 1 cut(s) 1832
Van91I CCANNNNNTGG 1 cut(s) 1217
Vha464I CTTAAG 1 cut(s) 766
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 2 cut(s) 725, 751
XceI RCATGY 3 cut(s) 503, 624, 1589
XcmI CCANNNNNNNNNTGG 3 cut(s) 613, 1364, 1621
XmnI GAANNNNTTC 1 cut(s) 1033
XspI CTAG 3 cut(s) 881, 1053, 1707
Zsp2I ATGCAT 3 cut(s) 431, 822, 2041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.