Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007447

Physical Location & Seq

Genomic Coordinates Reverse (-)

27254789 .. 27256305

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCAGCTAGAAGTTCTGGATTACATTTTGGTACCGGCAGGCCTCCTACTGATGGTGACTTACCATCTATGGCTTCTGTGCCGAATCGTTAAGCAACCCAACGAGACCGTCATCGGCATCAACTCCATCAATCGCCGCTTCTGGGTCCAAGCCATGATGGAGGATGCTCCAAAGAATGGTGTTCTTCCGGTGCAGACGCTTCGAAACAACATAATGGCATCGACCCTTTTGGCCTCGACCGCCATTACGCTCTGCTCTCTCATTGCCCTCTTGATGACCAGCGGCACCAAATACAGAACGACTTTATTCGTCTTTGGGGACCGAACCGAACTTGCATTTTCAATCAAGTTCTTCGCCATTTTGGTGTGTTTCTTGGTGGCATTCCTCTTCAACGTGCAGTCCATAAGGTACTACAGCCATGCCAGCATGCTCATCAACACGCCGTTCAAGAGGATGATGTCGCCGCCGCACCACAAGCAGCAGTACCTCACGACAGAGTACGTTGCCACCACCGTGAACCGAGGCAGCTATTTCTGGTCCTTGGGCCTCCGAGCATTCTACTTCTCGTTCCCTCTGTTTCTGTGGATTTTCGGGCCGATTCCTATGTTCTTGTCGTGCATTGTTTTGGTGATCTTGCTGTATTTTTTGGATGTCACCTTTCAGTTCAATTGGGTTGTTGCGGTTGCTGGGGATGAAGACCCGGTCCTCATTAAGGGTGATGAGGAGCAAGGCTTGTTCAATGCACCAGGGATCACACATTGTGACGGTACCTCAAGCGAAGTGTGTGGGAAACAGTGTGACAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

270

Amino Acids

30.49

Weight (kDa)

6.94

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24600 AT5G24600
fragaria_vesca	FvH4_7g33270 FvH4_7g33281
malus_domestica	MD07G1302500.v1.1 MD07G1302800.v1.1 MD07G1303000.v1.1 MD13G1115900.v1.1
prunus_persica	Prupe.2G321700_v2.0.a1
pyrus_communis	pycom07g27590 pycom07g27600
rosa_chinensis	RchiOBHm_Chr1g0334581 RchiOBHm_Chr1g0383261
rosa_laevigata	RLG00000026118
rosa_multiflora	Rmu_co8446583.1_g000001 Rmu_sc0007173.1_g000023 Rmu_sc0014196.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277460
rosa_rugosa	Rorug01G0439900
rosa_samantha	Rh1AG465600 Rh1BG423000 Rh1CG436200 Rh1DG153900 Rh1DG455700
rosa_wichuraiana	Rw1G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	31, 767
AccB1I	GGYRCC	3 cut(s)	31, 284, 767
AccB7I	CCANNNNNTGG	1 cut(s)	176
AciI	CCGC	6 cut(s)	136, 240, 282, 464, 467, 680
AclWI	GGATC	1 cut(s)	758
AdeI	CACNNNGTG	1 cut(s)	761
AfaI	GTAC	5 cut(s)	33, 410, 485, 500, 769
AfiI	CCNNNNNNNGG	4 cut(s)	52, 142, 176, 712
AgsI	TTSAA	5 cut(s)	342, 391, 448, 667, 739
AjnI	CCWGG	1 cut(s)	745
AleI	CACNNNNGTG	1 cut(s)	512
AluBI	AGCT	2 cut(s)	7, 528
AluI	AGCT	2 cut(s)	7, 528
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	758
AoxI	GGCC	4 cut(s)	40, 231, 544, 593
ApeKI	GCWGC	3 cut(s)	4, 478, 525
Asp718I	GGTACC	2 cut(s)	31, 767
AspS9I	GGNCC	6 cut(s)	145, 319, 537, 544, 593, 703
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	4 cut(s)	67, 640, 646, 728
AsuII	TTCGAA	1 cut(s)	202
AvaII	GGWCC	4 cut(s)	145, 319, 537, 703
BanI	GGYRCC	3 cut(s)	31, 284, 767
BbsI	GAAGAC	1 cut(s)	702
BbvI	GCAGC	3 cut(s)	16, 490, 537
BccI	CCATC	4 cut(s)	46, 72, 134, 151
BceAI	ACGGC	1 cut(s)	427
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	747
BcnI	CCSGG	1 cut(s)	701
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	412
BisI	GCNGC	7 cut(s)	5, 136, 283, 464, 467, 479, 526
BlsI	GCNGC	7 cut(s)	6, 137, 284, 465, 468, 480, 527
Bme1390I	CCNGG	2 cut(s)	701, 747
Bme18I	GGWCC	4 cut(s)	145, 319, 537, 703
BmgT120I	GGNCC	6 cut(s)	145, 319, 537, 544, 593, 703
BmiI	GGNNCC	5 cut(s)	33, 146, 286, 320, 769
BmrFI	CCNGG	2 cut(s)	701, 747
BmsI	GCATC	3 cut(s)	126, 154, 227
BpiI	GAAGAC	1 cut(s)	702
Bpu14I	TTCGAA	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	757
BpuMI	CCSGG	1 cut(s)	701
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	520, 540, 746
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 142, 176, 712
Bse118I	RCCGGY	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	3 cut(s)	520, 540, 746
BseGI	GGATG	4 cut(s)	169, 459, 655, 697
BseLI	CCNNNNNNNGG	4 cut(s)	52, 142, 176, 712
BseMI	GCAATG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	3 cut(s)	16, 490, 537
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	2 cut(s)	212, 416
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	4 cut(s)	42, 233, 546, 595
BshNI	GGYRCC	3 cut(s)	31, 284, 767
BsiEI	CGRYCG	1 cut(s)	240
BsiSI	CCGG	3 cut(s)	35, 188, 701
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	4 cut(s)	52, 142, 176, 712
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	2 cut(s)	380, 554
BsnI	GGCC	4 cut(s)	42, 233, 546, 595
Bso31I	GGTCTC	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	630, 750
BspACI	CCGC	6 cut(s)	136, 240, 282, 464, 467, 680
BspANI	GGCC	4 cut(s)	42, 233, 546, 595
BspLI	GGNNCC	5 cut(s)	33, 146, 286, 320, 769
BspPI	GGATC	1 cut(s)	758
BspT104I	TTCGAA	1 cut(s)	202
BspT107I	GGYRCC	3 cut(s)	31, 284, 767
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	3 cut(s)	520, 540, 746
BssMI	GATC	2 cut(s)	630, 750
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	5 cut(s)	109, 514, 767, 795, 803
Bst6I	CTCTTC	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	40, 424, 428
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstF5I	GGATG	4 cut(s)	169, 459, 655, 697
BstKTI	GATC	2 cut(s)	633, 753
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	630, 750
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 423, 475
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	699, 745
BstSFI	CTRYAG	1 cut(s)	412
BstV1I	GCAGC	3 cut(s)	16, 490, 537
BstV2I	GAAGAC	1 cut(s)	702
BsuRI	GGCC	4 cut(s)	42, 233, 546, 595
BtsCI	GGATG	4 cut(s)	169, 459, 655, 697
BtsIMutI	CAGTG	2 cut(s)	800, 808
Cac8I	GCNNGC	3 cut(s)	40, 424, 428
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	6 cut(s)	145, 319, 537, 544, 593, 703
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	5 cut(s)	32, 409, 484, 499, 768
CviAII	CATG	3 cut(s)	154, 419, 427
CviQI	GTAC	5 cut(s)	32, 409, 484, 499, 768
DpnI	GATC	2 cut(s)	632, 752
DpnII	GATC	2 cut(s)	630, 750
DraIII	CACNNNGTG	1 cut(s)	761
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	540
Eco147I	AGGCCT	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	4 cut(s)	145, 319, 537, 703
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	3 cut(s)	157, 422, 430
FaiI	YATR	7 cut(s)	70, 155, 212, 404, 420, 428, 605
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	3 cut(s)	153, 418, 426
Fnu4HI	GCNGC	7 cut(s)	5, 136, 283, 464, 467, 479, 526
FokI	GGATG	4 cut(s)	176, 466, 662, 704
Fsp4HI	GCNGC	7 cut(s)	5, 136, 283, 464, 467, 479, 526
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	7 cut(s)	5, 136, 283, 464, 467, 479, 526
GsaI	CCCAGC	1 cut(s)	690
HaeIII	GGCC	4 cut(s)	42, 233, 546, 595
HapII	CCGG	3 cut(s)	35, 188, 701
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	3 cut(s)	157, 422, 430
HinfI	GANTC	2 cut(s)	84, 598
HpaII	CCGG	3 cut(s)	35, 188, 701
HphI	GGTGA	4 cut(s)	67, 640, 646, 728
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	4 cut(s)	17, 271, 448, 490
Hpy8I	GTNNAC	1 cut(s)	517
HpyCH4III	ACNGT	5 cut(s)	109, 514, 767, 795, 803
HpyCH4IV	ACGT	2 cut(s)	393, 501
HpyCH4V	TGCA	6 cut(s)	4, 193, 335, 397, 618, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 423, 475
HpySE526I	ACGT	2 cut(s)	393, 501
Hsp92II	CATG	3 cut(s)	157, 422, 430
KpnI	GGTACC	2 cut(s)	35, 771
Kzo9I	GATC	2 cut(s)	630, 750
LmnI	GCTCC	2 cut(s)	172, 724
Lsp1109I	GCAGC	3 cut(s)	16, 490, 537
LweI	GCATC	3 cut(s)	126, 154, 227
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	2 cut(s)	393, 501
MaeIII	GTNAC	4 cut(s)	55, 652, 761, 797
MalI	GATC	2 cut(s)	632, 752
MboI	GATC	2 cut(s)	630, 750
MboII	GAAGA	4 cut(s)	176, 343, 379, 707
MfeI	CAATTG	1 cut(s)	667
MluCI	AATT	1 cut(s)	667
MseI	TTAA	2 cut(s)	90, 711
MslI	CAYNNNNRTG	2 cut(s)	362, 512
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	3 cut(s)	35, 188, 701
MspR9I	CCNGG	2 cut(s)	701, 747
MunI	CAATTG	1 cut(s)	667
Mva1269I	GAATGC	2 cut(s)	380, 554
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	3 cut(s)	239, 423, 475
NciI	CCSGG	1 cut(s)	701
NdeII	GATC	2 cut(s)	630, 750
NlaIII	CATG	3 cut(s)	157, 422, 430
NlaIV	GGNNCC	5 cut(s)	33, 146, 286, 320, 769
NmuCI	GTSAC	4 cut(s)	55, 652, 761, 797
NspI	RCATGY	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	202
OliI	CACNNNNGTG	1 cut(s)	512
PaeI	GCATGC	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	42
PctI	GAATGC	2 cut(s)	380, 554
PfeI	GAWTC	2 cut(s)	84, 598
PflFI	GACNNNGTC	1 cut(s)	701
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	7 cut(s)	6, 137, 284, 465, 468, 480, 527
Psp6I	CCWGG	1 cut(s)	745
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	5 cut(s)	33, 146, 286, 320, 769
PspPI	GGNCC	6 cut(s)	145, 319, 537, 544, 593, 703
PsyI	GACNNNGTC	1 cut(s)	701
RsaI	GTAC	5 cut(s)	33, 410, 485, 500, 769
RsaNI	GTAC	5 cut(s)	32, 409, 484, 499, 768
RseI	CAYNNNNRTG	2 cut(s)	362, 512
SaqAI	TTAA	2 cut(s)	90, 711
SatI	GCNGC	7 cut(s)	5, 136, 283, 464, 467, 479, 526
Sau3AI	GATC	2 cut(s)	630, 750
Sau96I	GGNCC	6 cut(s)	145, 319, 537, 544, 593, 703
ScrFI	CCNGG	2 cut(s)	701, 747
SetI	ASST	8 cut(s)	9, 396, 410, 489, 504, 530, 659, 773
SfaNI	GCATC	3 cut(s)	126, 154, 227
SfcI	CTRYAG	1 cut(s)	412
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	4 cut(s)	145, 319, 537, 703
SmiMI	CAYNNNNRTG	2 cut(s)	362, 512
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	1 cut(s)	667
SseBI	AGGCCT	1 cut(s)	42
SsiI	CCGC	6 cut(s)	136, 240, 282, 464, 467, 680
SspMI	CTAG	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	699, 745
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	5 cut(s)	109, 514, 767, 795, 803
TaiI	ACGT	2 cut(s)	396, 504
TaqI	TCGA	3 cut(s)	202, 221, 236
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	1 cut(s)	667
TauI	GCSGC	4 cut(s)	138, 285, 466, 469
TfiI	GAWTC	2 cut(s)	84, 598
Tru1I	TTAA	2 cut(s)	90, 711
Tru9I	TTAA	2 cut(s)	90, 711
TscAI	CASTG	2 cut(s)	800, 808
TseFI	GTSAC	4 cut(s)	55, 652, 761, 797
TseI	GCWGC	3 cut(s)	4, 478, 525
Tsp45I	GTSAC	4 cut(s)	55, 652, 761, 797
TspDTI	ATGAA	1 cut(s)	708
TspRI	CASTG	2 cut(s)	800, 808
Tth111I	GACNNNGTC	1 cut(s)	701
Van91I	CCANNNNNTGG	1 cut(s)	176
VpaK11BI	GGWCC	4 cut(s)	145, 319, 537, 703
XagI	CCTNNNNNAGG	1 cut(s)	710
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.