Rorug01G0439900

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007447
Physical Location & Seq
Forward (+)
53845168 .. 53845882
715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0439900.1

Sequence Viewer

Length: 303 bp
ATGACGTTTGACCTGGTTGGAAGAGTTCCGACAAACTCGACAAGTGCCTGCTACACAGGTCCAAAATGTAACGAAAAATTGGCAGCCTGCAGAGATCCCCAAACTCAATGTAGATGGGGCTTTTGTAACACAAGCTGCATATGGTGGAACTGGTGGTGTTCTAAGAAGATCAACTGGAAGCTTTATTGCTGCATTCATGAAGCCAGTGCAACATGTAAATTCAGCTCAACAGGTAGAGCTCCTTGCCATACAAGAAGGTTTAAATTTCCTGAAGACATTACATCTCCAACAAGTAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

100

Amino Acids

11.53

Weight (kDa)

8.95

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 2 cut(s) 218, 263
AcuI CTGAAG 1 cut(s) 291
AflIII ACRYGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 4 cut(s) 135, 181, 225, 239
AluI AGCT 4 cut(s) 135, 181, 225, 239
Alw21I GWGCWC 1 cut(s) 241
AlwI GGATC 1 cut(s) 89
ApeKI GCWGC 3 cut(s) 83, 135, 189
ApoI RAATTY 2 cut(s) 218, 263
AspS9I GGNCC 1 cut(s) 59
AvaII GGWCC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 3 cut(s) 95, 122, 176
BccI CCATC 1 cut(s) 108
BciT130I CCWGG 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 88
BisI GCNGC 3 cut(s) 84, 136, 190
BlsI GCNGC 3 cut(s) 85, 137, 191
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 279
Bse1I ACTGG 3 cut(s) 155, 179, 204
BseBI CCWGG 1 cut(s) 14
BseNI ACTGG 3 cut(s) 155, 179, 204
BseXI GCAGC 3 cut(s) 95, 122, 176
BsiHKAI GWGCWC 1 cut(s) 241
BsmI GAATGC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 94, 168
BspHI TCATGA 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 92
BspPI GGATC 1 cut(s) 89
BsrI ACTGG 3 cut(s) 155, 179, 204
BssMI GATC 2 cut(s) 94, 168
Bst2UI CCWGG 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 49, 88
BstDEI CTNAG 1 cut(s) 162
BstKTI GATC 2 cut(s) 97, 171
BstMBI GATC 2 cut(s) 94, 168
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 3 cut(s) 95, 122, 176
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 49, 88
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 12
CviAII CATG 2 cut(s) 197, 213
CviJI RGCY 7 cut(s) 86, 120, 135, 181, 203, 225, 239
CviKI_1 RGCY 7 cut(s) 86, 120, 135, 181, 203, 225, 239
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 96, 170
DpnII GATC 2 cut(s) 94, 168
DraI TTTAAA 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 2 cut(s) 200, 216
FaiI YATR 5 cut(s) 140, 142, 198, 214, 249
FatI CATG 2 cut(s) 196, 212
FauNDI CATATG 1 cut(s) 140
Fnu4HI GCNGC 3 cut(s) 84, 136, 190
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 3 cut(s) 84, 136, 190
GluI GCNGC 3 cut(s) 84, 136, 190
Hin1II CATG 2 cut(s) 200, 216
HindIII AAGCTT 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 197, 269
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 4 cut(s) 90, 138, 192, 209
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 2 cut(s) 200, 216
Kzo9I GATC 2 cut(s) 94, 168
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 9 cut(s) 26, 42, 61, 100, 136, 160, 216, 217, 282
Lsp1109I GCAGC 3 cut(s) 95, 122, 176
MabI ACCWGGT 1 cut(s) 12
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 68, 125
MalI GATC 2 cut(s) 96, 170
MboI GATC 2 cut(s) 94, 168
MboII GAAGA 3 cut(s) 33, 178, 284
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 4 cut(s) 77, 218, 263, 295
MmeI TCCRAC 1 cut(s) 53
MseI TTAA 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 140
NdeII GATC 2 cut(s) 94, 168
NlaIII CATG 2 cut(s) 200, 216
NspI RCATGY 1 cut(s) 216
PagI TCATGA 1 cut(s) 196
PciI ACATGT 1 cut(s) 212
PctI GAATGC 1 cut(s) 192
PkrI GCNGC 3 cut(s) 85, 137, 191
PscI ACATGT 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 94
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 84, 136, 190
Sau3AI GATC 2 cut(s) 94, 168
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 241
SetI ASST 9 cut(s) 8, 15, 61, 137, 183, 227, 235, 241, 260
SexAI ACCWGGT 1 cut(s) 12
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 1 cut(s) 59
Sse9I AATT 4 cut(s) 77, 218, 263, 295
SstI GAGCTC 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 12
TaiI ACGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 38
TasI AATT 4 cut(s) 77, 218, 263, 295
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 211
TseI GCWGC 3 cut(s) 83, 135, 189
TspDTI ATGAA 2 cut(s) 185, 213
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 2 cut(s) 218, 263
XceI RCATGY 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.