Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446583.1

Orthogroup ID

OG0007447

Physical Location & Seq

Genomic Coordinates Reverse (-)

587 .. 1407

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggagagaaaagatcttgattacattttggtcccagcaggcctcctagtcatggtgggataccatctctggctcctctaccgaatcaaaacccaacccaacagcactgtcatcggcatcaattgcatcaatcgcagtttctgggtgcgcgccatgatggaggacacgtccaaaaatggtgttcttgcggtgcagacgcttcgaaacaacataatggcatcaacccttttggcctccacggcgatcatgctcagctctctcattgctgtgttgatgagtagtgtaaccaaagatagaagtgcatcggttttcgtttacgggaacacaagcgagaagggatactccatcaaatacttttccattttggtctgtttcttggtggctttcttgttcaatgtgcagtccataaggtactacagtcatgcaagcattctgatcaacgcgccgttcaagaagatgtctccgcatctgaagcatcacaatttgacaacagagtatgtggcaaacactgtgaacagaggcagctacttctggtctttgggtctccgagccttctacttttcgttccctctgttcttgtggatctttggtcccataccgatgttcttgtcctgctttgttttggttgtcatgctctatttccttgacgtcactttccaatttgggtgggttgctggggttgacgatgaggaacatagcatcatcaccaaggatgaagaacaaggggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

243

Amino Acids

27.7

Weight (kDa)

8.69

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24600 AT5G24600
fragaria_vesca	FvH4_7g33270 FvH4_7g33281
malus_domestica	MD07G1302500.v1.1 MD07G1302800.v1.1 MD07G1303000.v1.1 MD13G1115900.v1.1
prunus_persica	Prupe.2G321700_v2.0.a1
pyrus_communis	pycom07g27590 pycom07g27600
rosa_chinensis	RchiOBHm_Chr1g0334581 RchiOBHm_Chr1g0383261
rosa_laevigata	RLG00000026118
rosa_multiflora	Rmu_co8446583.1_g000001 Rmu_sc0007173.1_g000023 Rmu_sc0014196.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277460
rosa_rugosa	Rorug01G0439900
rosa_samantha	Rh1AG465600 Rh1BG423000 Rh1CG436200 Rh1DG153900 Rh1DG455700
rosa_wichuraiana	Rw1G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	651
AccII	CGCG	2 cut(s)	150, 443
AciI	CCGC	2 cut(s)	188, 464
AclWI	GGATC	1 cut(s)	590
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	394, 451
AjiI	CACGTC	1 cut(s)	168
AluBI	AGCT	2 cut(s)	255, 525
AluI	AGCT	2 cut(s)	255, 525
Alw26I	GTCTC	2 cut(s)	465, 548
AlwI	GGATC	1 cut(s)	590
AlwNI	CAGNNNCTG	1 cut(s)	141
AoxI	GGCC	2 cut(s)	40, 231
ApeKI	GCWGC	1 cut(s)	522
AspLEI	GCGC	3 cut(s)	150, 152, 445
AspS9I	GGNCC	2 cut(s)	31, 590
AsuHPI	GGTGA	1 cut(s)	697
AsuII	TTCGAA	1 cut(s)	202
AvaII	GGWCC	2 cut(s)	31, 590
BaeI	ACNNNNGTAYC	2 cut(s)	403, 436
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	3 cut(s)	72, 151, 353
BceAI	ACGGC	2 cut(s)	255, 430
BcgI	CGANNNNNNTGC	4 cut(s)	94, 128, 182, 216
BciVI	GTATCC	2 cut(s)	53, 332
BclI	TGATCA	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	465, 548
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	415
BfuI	GTATCC	2 cut(s)	53, 332
BglI	GCCNNNNNGGC	1 cut(s)	239
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	1 cut(s)	523
BlpI	GCTNAGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	524
Bme18I	GGWCC	2 cut(s)	31, 590
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	31, 590
BmiI	GGNNCC	3 cut(s)	33, 74, 592
BmsI	GCATC	7 cut(s)	126, 135, 227, 311, 475, 484, 708
Bpu1102I	GCTNAGC	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	237, 708
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	237, 708
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	265
BsePI	GCGCGC	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	534
BseYI	CCCAGC	2 cut(s)	34, 674
BsgI	GTGCAG	2 cut(s)	212, 419
Bsh1236I	CGCG	2 cut(s)	150, 443
BshFI	GGCC	2 cut(s)	42, 233
BslFI	GGGAC	2 cut(s)	17, 576
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	465, 548
BsmFI	GGGAC	2 cut(s)	17, 576
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	42, 233
Bso31I	GGTCTC	1 cut(s)	548
Bsp119I	TTCGAA	1 cut(s)	202
Bsp143I	GATC	4 cut(s)	13, 243, 435, 582
Bsp1720I	GCTNAGC	1 cut(s)	251
BspACI	CCGC	2 cut(s)	188, 464
BspANI	GGCC	2 cut(s)	42, 233
BspCNI	CTCAG	1 cut(s)	264
BspFNI	CGCG	2 cut(s)	150, 443
BspLI	GGNNCC	3 cut(s)	33, 74, 592
BspPI	GGATC	1 cut(s)	590
BspT104I	TTCGAA	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	237, 708
BssHII	GCGCGC	1 cut(s)	148
BssMI	GATC	4 cut(s)	13, 243, 435, 582
BssNI	GRCGYC	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	708
Bst4CI	ACNGT	3 cut(s)	109, 419, 511
BstACI	GRCGYC	1 cut(s)	648
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	40, 150, 427
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	2 cut(s)	150, 443
BstHHI	GCGC	3 cut(s)	150, 152, 445
BstKTI	GATC	4 cut(s)	16, 246, 438, 585
BstMAI	GTCTC	2 cut(s)	465, 548
BstMBI	GATC	4 cut(s)	13, 243, 435, 582
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 132, 239, 472
BstSFI	CTRYAG	1 cut(s)	415
BstUI	CGCG	2 cut(s)	150, 443
BstV1I	GCAGC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	13, 582
BstYI	RGATCY	2 cut(s)	13, 582
BsuI	GTATCC	2 cut(s)	53, 332
BsuRI	GGCC	2 cut(s)	42, 233
BtgI	CCRYGG	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	2 cut(s)	105, 507
Cac8I	GCNNGC	3 cut(s)	40, 150, 427
CaiI	CAGNNNCTG	1 cut(s)	141
CfoI	GCGC	3 cut(s)	150, 152, 445
Cfr13I	GGNCC	2 cut(s)	31, 590
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	412
CspCI	CAANNNNNGTGG	2 cut(s)	647, 682
CviAII	CATG	5 cut(s)	52, 154, 247, 422, 631
CviJI	RGCY	7 cut(s)	42, 73, 233, 255, 383, 525, 551
CviKI_1	RGCY	7 cut(s)	42, 73, 233, 255, 383, 525, 551
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	4 cut(s)	15, 245, 437, 584
DpnII	GATC	4 cut(s)	13, 243, 435, 582
Eco130I	CCWWGG	1 cut(s)	708
Eco147I	AGGCCT	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	2 cut(s)	31, 590
Eco57I	CTGAAG	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	708
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	5 cut(s)	55, 157, 250, 425, 634
FaqI	GGGAC	2 cut(s)	17, 576
FatI	CATG	5 cut(s)	51, 153, 246, 421, 630
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	1 cut(s)	523
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	3 cut(s)	149, 151, 444
GluI	GCNGC	1 cut(s)	523
GsaI	CCCAGC	2 cut(s)	38, 678
HaeIII	GGCC	2 cut(s)	42, 233
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	3 cut(s)	150, 152, 445
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	5 cut(s)	55, 157, 250, 425, 634
Hin6I	GCGC	3 cut(s)	148, 150, 443
HinP1I	GCGC	3 cut(s)	148, 150, 443
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	1 cut(s)	84
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	3 cut(s)	316, 514, 682
Hpy188I	TCNGA	3 cut(s)	435, 471, 548
Hpy188III	TCNNGA	2 cut(s)	17, 451
Hpy8I	GTNNAC	3 cut(s)	316, 514, 682
HpyAV	CCTTC	2 cut(s)	328, 562
HpyCH4III	ACNGT	3 cut(s)	109, 419, 511
HpyCH4IV	ACGT	2 cut(s)	167, 648
HpyCH4V	TGCA	5 cut(s)	126, 193, 302, 400, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 132, 239, 472
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	2 cut(s)	167, 648
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	5 cut(s)	55, 157, 250, 425, 634
HspAI	GCGC	3 cut(s)	148, 150, 443
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	4 cut(s)	13, 243, 435, 582
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	7 cut(s)	24, 48, 55, 127, 517, 625, 660
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	7 cut(s)	126, 135, 227, 311, 475, 484, 708
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	2 cut(s)	167, 648
MaeIII	GTNAC	2 cut(s)	283, 649
MalI	GATC	4 cut(s)	15, 245, 437, 584
MboI	GATC	4 cut(s)	13, 243, 435, 582
MboII	GAAGA	2 cut(s)	466, 728
MfeI	CAATTG	1 cut(s)	121
MflI	RGATCY	2 cut(s)	13, 582
MluCI	AATT	3 cut(s)	121, 481, 659
MnlI	CCTC	7 cut(s)	53, 86, 154, 244, 512, 579, 682
MslI	CAYNNNNRTG	2 cut(s)	266, 599
MunI	CAATTG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	429
MvnI	CGCG	2 cut(s)	150, 443
MwoI	GCNNNNNNNGC	4 cut(s)	123, 132, 239, 472
NdeII	GATC	4 cut(s)	13, 243, 435, 582
NlaIII	CATG	5 cut(s)	55, 157, 250, 425, 634
NlaIV	GGNNCC	3 cut(s)	33, 74, 592
NmuCI	GTSAC	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	202
PauI	GCGCGC	1 cut(s)	148
PceI	AGGCCT	1 cut(s)	42
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	524
PspFI	CCCAGC	2 cut(s)	34, 674
PspN4I	GGNNCC	3 cut(s)	33, 74, 592
PspPI	GGNCC	2 cut(s)	31, 590
PstNI	CAGNNNCTG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	13, 582
PteI	GCGCGC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	2 cut(s)	266, 599
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	4 cut(s)	13, 243, 435, 582
Sau96I	GGNCC	2 cut(s)	31, 590
SetI	ASST	5 cut(s)	170, 257, 413, 527, 651
SfaNI	GCATC	7 cut(s)	126, 135, 227, 311, 475, 484, 708
SfcI	CTRYAG	1 cut(s)	415
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	2 cut(s)	31, 590
SmiMI	CAYNNNNRTG	2 cut(s)	266, 599
Sse9I	AATT	3 cut(s)	121, 481, 659
SseBI	AGGCCT	1 cut(s)	42
SsiI	CCGC	2 cut(s)	188, 464
SspMI	CTAG	1 cut(s)	47
StuI	AGGCCT	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	3 cut(s)	109, 419, 511
TaiI	ACGT	2 cut(s)	170, 651
TaqI	TCGA	1 cut(s)	202
TasI	AATT	3 cut(s)	121, 481, 659
TfiI	GAWTC	1 cut(s)	84
TscAI	CASTG	2 cut(s)	112, 514
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	1 cut(s)	522
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	1 cut(s)	729
TspRI	CASTG	2 cut(s)	112, 514
VpaK11BI	GGWCC	2 cut(s)	31, 590
XspI	CTAG	1 cut(s)	47
ZraI	GACGTC	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.