Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011608

Physical Location & Seq

Genomic Coordinates Reverse (-)

27612062 .. 27612556

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGAACACTGAGCTCCCAAATTTTGAATTTATGTCCATGGGAGAAGCCTCTTTCCTTCCATGTTTGTGGGACCCATGAAACCTTTACACCCCTTCCCTTCCCTACCACTTTTGATGCCGGATGCGGAGTCGATTTGAATTTCCTCAACACCACCGCTCCCACCACCTTCATGGATTCCTCTGGTCCTGCCCTCGCGCTCGCGCCCCCTTCAATTGCAGAGCCTCATGACGCCATGGAGTTTGAATCTCATGAAGCCGCATACACCTTCTACAAAGCATATGCCAAGTCCGTCGGTTTCGGCACTGCTAAGTTGAGCAGTCGTCGCTCTAGAGTATCCGGGGAGTTCATTGATGCCAAATTTTCATGCATCCGATACGGAAACAAGCAGCAGTCCGATGATGCCATCAATCCTCGACCTTCTCCCAAAATTGGCTGCAAAGCATGCATGTCAAGCGCAGGCCAAGTGGTAATTGATATGTTTATAGTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

165

Amino Acids

17.7

Weight (kDa)

6.04

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	89 - 151	5.5e-16	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011608)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g28210
rosa_laevigata	RLG00000035802
rosa_multiflora	Rmu_sc0000685.1_g000014 Rmu_sc0001719.1_g000008 Rmu_sc0005507.1_g000039 Rmu_sc0006005.1_g000001 Rmu_sc0026606.1_g000001
rosa_rugosa	Rorug01G0223400 Rorug03G0333200 Rorug03G0333500
rosa_samantha	Rh1AG260800 Rh2BG067100 Rh2CG068400 Rh2CG538900 Rh2DG411000 Rh3AG272900 Rh5BG325800 Rh6BG198100 Rh7AG279400 Rh7CG298600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	158
AccII	CGCG	2 cut(s)	197, 203
AciI	CCGC	3 cut(s)	126, 156, 258
AcsI	RAATTY	4 cut(s)	21, 28, 139, 359
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	4 cut(s)	28, 139, 213, 245
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw21I	GWGCWC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	2 cut(s)	388, 435
ApoI	RAATTY	4 cut(s)	21, 28, 139, 359
AspLEI	GCGC	3 cut(s)	199, 205, 458
AspS9I	GGNCC	2 cut(s)	72, 185
AsuC2I	CCSGG	1 cut(s)	340
AvaII	GGWCC	2 cut(s)	72, 185
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	400, 422
BccI	CCATC	1 cut(s)	413
BciVI	GTATCC	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	340
BfaI	CTAG	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	346
BisI	GCNGC	3 cut(s)	258, 389, 436
BlsI	GCNGC	3 cut(s)	259, 390, 437
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	2 cut(s)	72, 185
BmgT120I	GGNCC	2 cut(s)	72, 185
BmiI	GGNNCC	2 cut(s)	73, 74
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	5 cut(s)	106, 113, 343, 378, 391
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	38, 234, 339
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
BseDI	CCNNGG	3 cut(s)	38, 234, 339
BseGI	GGATG	2 cut(s)	128, 369
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseXI	GCAGC	2 cut(s)	400, 422
Bsh1236I	CGCG	2 cut(s)	197, 203
BshFI	GGCC	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	120, 339
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp19I	CCATGG	2 cut(s)	38, 234
BspACI	CCGC	3 cut(s)	126, 156, 258
BspANI	GGCC	1 cut(s)	462
BspFNI	CGCG	2 cut(s)	197, 203
BspHI	TCATGA	2 cut(s)	226, 250
BspLI	GGNNCC	2 cut(s)	73, 74
BsrBI	CCGCTC	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	38, 234, 339
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	38, 234
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstC8I	GCNNGC	3 cut(s)	201, 445, 460
BstDEI	CTNAG	2 cut(s)	11, 309
BstDSI	CCRYGG	2 cut(s)	38, 234
BstF5I	GGATG	2 cut(s)	128, 369
BstFNI	CGCG	2 cut(s)	197, 203
BstHHI	GCGC	3 cut(s)	199, 205, 458
BstMWI	GCNNNNNNNGC	3 cut(s)	324, 444, 453
BstNSI	RCATGY	2 cut(s)	447, 451
BstSCI	CCNGG	1 cut(s)	338
BstUI	CGCG	2 cut(s)	197, 203
BstV1I	GCAGC	2 cut(s)	400, 422
BstXI	CCANNNNNNTGG	2 cut(s)	68, 172
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	462
BtgI	CCRYGG	2 cut(s)	38, 234
BtsCI	GGATG	2 cut(s)	128, 369
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	8, 303
Cac8I	GCNNGC	3 cut(s)	201, 445, 460
CciI	TCATGA	2 cut(s)	226, 250
CfoI	GCGC	3 cut(s)	199, 205, 458
Cfr13I	GGNCC	2 cut(s)	72, 185
CseI	GACGC	1 cut(s)	239
CviJI	RGCY	6 cut(s)	15, 49, 223, 257, 435, 462
CviKI_1	RGCY	6 cut(s)	15, 49, 223, 257, 435, 462
DdeI	CTNAG	2 cut(s)	11, 309
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	38, 234
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	72, 185
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	72
EcoT14I	CCWWGG	2 cut(s)	38, 234
EcoT22I	ATGCAT	2 cut(s)	371, 449
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	2 cut(s)	38, 234
FaqI	GGGAC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	258, 389, 436
FokI	GGATG	2 cut(s)	135, 356
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	258, 389, 436
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	3 cut(s)	198, 204, 457
GluI	GCNGC	3 cut(s)	258, 389, 436
HaeIII	GGCC	1 cut(s)	462
HapII	CCGG	2 cut(s)	120, 339
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	3 cut(s)	199, 205, 458
Hin1I	GRCGYC	1 cut(s)	231
Hin6I	GCGC	3 cut(s)	197, 203, 456
HinP1I	GCGC	3 cut(s)	197, 203, 456
HinfI	GANTC	3 cut(s)	129, 176, 245
HpaII	CCGG	2 cut(s)	120, 339
Hpy188I	TCNGA	2 cut(s)	374, 397
Hpy188III	TCNNGA	3 cut(s)	227, 251, 330
Hpy99I	CGWCG	2 cut(s)	296, 327
HpyAV	CCTTC	7 cut(s)	67, 104, 109, 178, 219, 277, 429
HpyCH4V	TGCA	4 cut(s)	218, 369, 438, 447
HpyF10VI	GCNNNNNNNGC	3 cut(s)	324, 444, 453
HpyF3I	CTNAG	2 cut(s)	11, 309
Hsp92I	GRCGYC	1 cut(s)	231
HspAI	GCGC	3 cut(s)	197, 203, 456
KflI	GGGWCCC	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	20, 163
LpnPI	CCDG	5 cut(s)	133, 168, 201, 352, 444
Lsp1109I	GCAGC	2 cut(s)	400, 422
LweI	GCATC	5 cut(s)	106, 113, 343, 378, 391
MaeI	CTAG	1 cut(s)	330
MbiI	CCGCTC	1 cut(s)	158
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	7 cut(s)	21, 28, 139, 213, 359, 429, 471
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	6 cut(s)	60, 155, 190, 203, 234, 423
Mph1103I	ATGCAT	2 cut(s)	371, 449
MslI	CAYNNNNRTG	2 cut(s)	66, 170
MspI	CCGG	2 cut(s)	120, 339
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	197, 203
MwoI	GCNNNNNNNGC	3 cut(s)	324, 444, 453
NciI	CCSGG	1 cut(s)	340
NcoI	CCATGG	2 cut(s)	38, 234
NdeI	CATATG	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	73, 74
NsiI	ATGCAT	2 cut(s)	371, 449
NspI	RCATGY	2 cut(s)	447, 451
PaeI	GCATGC	1 cut(s)	447
PagI	TCATGA	2 cut(s)	226, 250
PfeI	GAWTC	2 cut(s)	176, 245
PkrI	GCNGC	3 cut(s)	259, 390, 437
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	73, 74
PspPI	GGNCC	2 cut(s)	72, 185
PspPPI	RGGWCCY	1 cut(s)	72
RseI	CAYNNNNRTG	2 cut(s)	66, 170
SacI	GAGCTC	1 cut(s)	17
SatI	GCNGC	3 cut(s)	258, 389, 436
Sau96I	GGNCC	2 cut(s)	72, 185
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	5 cut(s)	17, 86, 170, 269, 421
SfaNI	GCATC	5 cut(s)	106, 113, 343, 378, 391
SinI	GGWCC	2 cut(s)	72, 185
SmiMI	CAYNNNNRTG	2 cut(s)	66, 170
SphI	GCATGC	1 cut(s)	447
Sse9I	AATT	7 cut(s)	21, 28, 139, 213, 359, 429, 471
SsiI	CCGC	3 cut(s)	126, 156, 258
SspMI	CTAG	1 cut(s)	330
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	2 cut(s)	38, 234
TaqI	TCGA	2 cut(s)	132, 415
TasI	AATT	7 cut(s)	21, 28, 139, 213, 359, 429, 471
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	176, 245
TscAI	CASTG	2 cut(s)	15, 310
TseI	GCWGC	2 cut(s)	388, 435
TspDTI	ATGAA	5 cut(s)	93, 160, 267, 337, 354
TspGWI	ACGGA	2 cut(s)	280, 393
TspRI	CASTG	2 cut(s)	15, 310
VpaK11BI	GGWCC	2 cut(s)	72, 185
XapI	RAATTY	4 cut(s)	21, 28, 139, 359
XbaI	TCTAGA	1 cut(s)	329
XceI	RCATGY	2 cut(s)	447, 451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	1 cut(s)	330
Zsp2I	ATGCAT	2 cut(s)	371, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.