Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000685.1

Orthogroup ID

OG0011608

Physical Location & Seq

Genomic Coordinates Forward (+)

50870 .. 51760

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000685.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgaaaatagattgcaaggcaatgttgcatgtcaaaagaaggcaagatgggaaatgggttgttcaaaattttgtgaaagagcataatcatgaactttctccggcggatgtccactacttttcatgttatagaaacattgctactggtgacttgaacaatattagtactttgcattcagttggagtgaaaccgagtaagatttttgctgctttagctaaaaagtgtggaggatatcagaacattggttttttacaaaaagacatgagaaattttttggataagaaacgtcggttagaattggaatctggcaatgctaaggcaatgttggagcattttactagtatgcaagaagagaatcctaatttcttctatgcaatggatctagatgaagaacaacgcttgagaaatgtgttttgggttgatgcaaaaggccgggaggactacatgattttcggagatgtgttttcttttgatacgacatatataaacaaatataagatgccttttgctccttttattggagtgaataatcatttccagtctacattacttggttgtgcactccttgtagatgaaactacatcgacgttcgtttggttaatggagacatgggttagagcaatgggtggaagagctcttattgccattttaactgatcaatatcaagccatgaaagctgcaattgcaaaagtttttccaaatgctagacagaggttctgtttgtggcatatattgaagaagcttctagaaaaacttagtagttttctgaaggaaaatgaaaattttatgcctgtatttaatgattgtatctaccattcatggacagaggaggactttgagaacaaatggcaaagtataattgagatctttaatttgggagatgatcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

296

Amino Acids

34.62

Weight (kDa)

7.11

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011608)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g28210
rosa_laevigata	RLG00000035802
rosa_multiflora	Rmu_sc0000685.1_g000014 Rmu_sc0001719.1_g000008 Rmu_sc0005507.1_g000039 Rmu_sc0006005.1_g000001 Rmu_sc0026606.1_g000001
rosa_rugosa	Rorug01G0223400 Rorug03G0333200 Rorug03G0333500
rosa_samantha	Rh1AG260800 Rh2BG067100 Rh2CG068400 Rh2CG538900 Rh2DG411000 Rh3AG272900 Rh5BG325800 Rh6BG198100 Rh7AG279400 Rh7CG298600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	542
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	387
AcsI	RAATTY	3 cut(s)	67, 268, 781
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	3 cut(s)	65, 154, 736
AhlI	ACTAGT	1 cut(s)	338
AjuI	GAANNNNNNNTTGG	2 cut(s)	397, 429
AluBI	AGCT	4 cut(s)	215, 635, 677, 742
AluI	AGCT	4 cut(s)	215, 635, 677, 742
Alw21I	GWGCWC	2 cut(s)	562, 637
Alw26I	GTCTC	1 cut(s)	599
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	1 cut(s)	430
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	2 cut(s)	206, 677
ApoI	RAATTY	3 cut(s)	67, 268, 781
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	637
Bbv12I	GWGCWC	2 cut(s)	562, 637
BbvI	GCAGC	2 cut(s)	193, 664
BccI	CCATC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	599
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	4 cut(s)	339, 383, 705, 746
BglII	AGATCT	1 cut(s)	864
BisI	GCNGC	2 cut(s)	207, 678
BlsI	GCNGC	2 cut(s)	208, 679
BmcAI	AGTACT	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	412, 489
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	886
BsaBI	GATNNNNATC	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	148, 538
Bse3DI	GCAATG	6 cut(s)	27, 135, 316, 327, 381, 627
Bse8I	GATNNNNATC	1 cut(s)	660
BseCI	ATCGAT	1 cut(s)	886
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMI	GCAATG	6 cut(s)	27, 135, 316, 327, 381, 627
BseNI	ACTGG	2 cut(s)	148, 538
BseRI	GAGGAG	1 cut(s)	842
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	2 cut(s)	193, 664
BshFI	GGCC	1 cut(s)	432
BshVI	ATCGAT	1 cut(s)	886
BsiHKAI	GWGCWC	2 cut(s)	562, 637
BsiSI	CCGG	2 cut(s)	101, 433
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	1 cut(s)	599
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	562, 637
Bsp143I	GATC	4 cut(s)	379, 655, 864, 883
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	432
BspDI	ATCGAT	1 cut(s)	886
BspHI	TCATGA	1 cut(s)	88
BspPI	GGATC	1 cut(s)	387
BspQI	GCTCTTC	1 cut(s)	625
BsrDI	GCAATG	6 cut(s)	27, 135, 316, 327, 381, 627
BsrI	ACTGG	2 cut(s)	148, 538
BssMI	GATC	4 cut(s)	379, 655, 864, 883
Bst6I	CTCTTC	2 cut(s)	345, 625
BstDEI	CTNAG	2 cut(s)	315, 755
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	4 cut(s)	382, 658, 867, 886
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	4 cut(s)	379, 655, 864, 883
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 641, 674, 683
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	562
BstV1I	GCAGC	2 cut(s)	193, 664
BstX2I	RGATCY	2 cut(s)	379, 864
BstYI	RGATCY	2 cut(s)	379, 864
Bsu15I	ATCGAT	1 cut(s)	886
BsuRI	GGCC	1 cut(s)	432
BsuTUI	ATCGAT	1 cut(s)	886
BtsCI	GGATG	1 cut(s)	112
CciI	TCATGA	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	886
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	8 cut(s)	29, 89, 123, 262, 445, 609, 670, 819
CviJI	RGCY	6 cut(s)	215, 432, 635, 668, 677, 742
CviKI_1	RGCY	6 cut(s)	215, 432, 635, 668, 677, 742
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	315, 755
DpnI	GATC	4 cut(s)	381, 657, 866, 885
DpnII	GATC	4 cut(s)	379, 655, 864, 883
Eam1104I	CTCTTC	2 cut(s)	345, 625
EarI	CTCTTC	2 cut(s)	345, 625
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	635
Eco24I	GRGCYC	1 cut(s)	637
Eco32I	GATATC	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	788
EcoICRI	GAGCTC	1 cut(s)	635
EcoRV	GATATC	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	637
FaeI	CATG	8 cut(s)	32, 92, 126, 265, 448, 612, 673, 822
FatI	CATG	8 cut(s)	28, 88, 122, 261, 444, 608, 669, 818
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	2 cut(s)	207, 678
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	2 cut(s)	207, 678
FspBI	CTAG	4 cut(s)	339, 383, 705, 746
GluI	GCNGC	2 cut(s)	207, 678
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	2 cut(s)	101, 433
Hin1II	CATG	8 cut(s)	32, 92, 126, 265, 448, 612, 673, 822
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	2 cut(s)	302, 355
HpaII	CCGG	2 cut(s)	101, 433
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	3 cut(s)	112, 543, 560
Hpy188I	TCNGA	3 cut(s)	237, 455, 768
Hpy188III	TCNNGA	3 cut(s)	89, 383, 746
Hpy8I	GTNNAC	3 cut(s)	112, 543, 560
Hpy99I	CGWCG	2 cut(s)	291, 589
HpyAV	CCTTC	2 cut(s)	33, 763
HpyCH4IV	ACGT	2 cut(s)	286, 587
HpyCH4V	TGCA	9 cut(s)	15, 28, 172, 346, 374, 425, 560, 680, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 641, 674, 683
HpyF3I	CTNAG	2 cut(s)	315, 755
HpySE526I	ACGT	2 cut(s)	286, 587
Hsp92II	CATG	8 cut(s)	32, 92, 126, 265, 448, 612, 673, 822
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	4 cut(s)	379, 655, 864, 883
LguI	GCTCTTC	1 cut(s)	625
LmnI	GCTCC	2 cut(s)	328, 514
LpnPI	CCDG	6 cut(s)	114, 129, 291, 446, 551, 804
Lsp1109I	GCAGC	2 cut(s)	193, 664
LweI	GCATC	2 cut(s)	412, 489
MaeI	CTAG	4 cut(s)	339, 383, 705, 746
MaeII	ACGT	2 cut(s)	286, 587
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	4 cut(s)	381, 657, 866, 885
MboI	GATC	4 cut(s)	379, 655, 864, 883
MboII	GAAGA	5 cut(s)	358, 362, 401, 642, 748
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	2 cut(s)	379, 864
MhlI	GDGCHC	2 cut(s)	562, 637
MluCI	AATT	8 cut(s)	67, 268, 296, 361, 681, 781, 858, 871
MmeI	TCCRAC	2 cut(s)	160, 306
MnlI	CCTC	5 cut(s)	221, 430, 705, 820, 823
MseI	TTAA	4 cut(s)	599, 650, 798, 870
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	2 cut(s)	101, 433
MspR9I	CCNGG	1 cut(s)	434
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	4 cut(s)	212, 641, 674, 683
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	4 cut(s)	379, 655, 864, 883
NlaIII	CATG	8 cut(s)	32, 92, 126, 265, 448, 612, 673, 822
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	32
PagI	TCATGA	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	625
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	302, 355
PkrI	GCNGC	2 cut(s)	208, 679
Psp124BI	GAGCTC	1 cut(s)	637
PsuI	RGATCY	2 cut(s)	379, 864
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	637
SapI	GCTCTTC	1 cut(s)	625
SaqAI	TTAA	4 cut(s)	599, 650, 798, 870
SatI	GCNGC	2 cut(s)	207, 678
Sau3AI	GATC	4 cut(s)	379, 655, 864, 883
ScaI	AGTACT	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	2 cut(s)	562, 637
SetI	ASST	7 cut(s)	217, 289, 590, 637, 679, 716, 744
SfaNI	GCATC	2 cut(s)	412, 489
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	8 cut(s)	67, 268, 296, 361, 681, 781, 858, 871
SsiI	CCGC	1 cut(s)	104
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	4 cut(s)	339, 383, 705, 746
SstI	GAGCTC	1 cut(s)	637
StyD4I	CCNGG	1 cut(s)	432
TaiI	ACGT	2 cut(s)	289, 590
TaqI	TCGA	2 cut(s)	584, 886
TasI	AATT	8 cut(s)	67, 268, 296, 361, 681, 781, 858, 871
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	302, 355
Tru1I	TTAA	4 cut(s)	599, 650, 798, 870
Tru9I	TTAA	4 cut(s)	599, 650, 798, 870
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	2 cut(s)	206, 677
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	8 cut(s)	17, 105, 111, 402, 588, 686, 792, 807
VneI	GTGCAC	1 cut(s)	558
XapI	RAATTY	3 cut(s)	67, 268, 781
XbaI	TCTAGA	2 cut(s)	382, 745
XceI	RCATGY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	542
XspI	CTAG	4 cut(s)	339, 383, 705, 746
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.