Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011608

Physical Location & Seq

Genomic Coordinates Forward (+)

30676407 .. 30677508

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG298600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTCAAAGATCTACACACTTGAGATTTTTAAGAGGTTTGAAGAAGAGGTTTTGGGAATTTCAGCATGCAATCCTATAAAACAAAAGGAGGATCCCATGACCATGACTTTTAGAGTTCAAGATTTTGGAATGAAAGAAGAGTTCATTGTAGTTGTGGATGGAATTAGCACAGGAGATGTATCTTGTTTATGTCGTCTACTTGAATACAAAGGTTTTCTTTGTAGGCATGCAATGGCTATATTGCAATATTTTGGTATTTTTTGTATACCAGATCAGTACATACTTCAGAGATGGAGAAAAGATGTGAAAACAAGACACACAACAAGAGAAACTAAGGTGGTTGACCCTAAAATTCAGCGTTTCAATGGCTTGTTTCAGAAATACAGAAAAGTATGTGAAGAAGGGTCTCTTTCTGATCAAAAGTATGATATTGCAAAACATTTACTAGAGGAGGCCTTGAGACAATGTGGAAGCATCAGTCCTTCTATTAATGTCAATAAAGAAATGGTGAAGAACATTGACAAAGAGAATGTCAATAATAAAGTGAGCTGTGACATTCATATTCTTGATCCAAAAGTTTCAAGCACAAAAGGAGCACCTAAAAGAATACGATCTGGAGTTGAGATCAGTTCAAGAAACGGTAACAAAAGATCAAGAAAGGCACAAGAAAATCTTGAAGCACCTAAAGATAAGACAAAAAATACCTTACAGAAGGTACATGAAAAAGTAGGGGATACAAATTTTGATAATAATGAATGTACACAAGACTGCTTGCAGGATATTGGGAATACGCTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

266

Amino Acids

30.58

Weight (kDa)

8.71

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	50 - 83	8.6e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0011608)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g28210
rosa_laevigata	RLG00000035802
rosa_multiflora	Rmu_sc0000685.1_g000014 Rmu_sc0001719.1_g000008 Rmu_sc0005507.1_g000039 Rmu_sc0006005.1_g000001 Rmu_sc0026606.1_g000001
rosa_rugosa	Rorug01G0223400 Rorug03G0333200 Rorug03G0333500
rosa_samantha	Rh1AG260800 Rh2BG067100 Rh2CG068400 Rh2CG538900 Rh2DG411000 Rh3AG272900 Rh5BG325800 Rh6BG198100 Rh7AG279400 Rh7CG298600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	196, 265
AclWI	GGATC	3 cut(s)	86, 99, 563
AcsI	RAATTY	3 cut(s)	57, 351, 739
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	3 cut(s)	278, 717, 760
AgsI	TTSAA	7 cut(s)	41, 119, 203, 364, 582, 633, 677
AluBI	AGCT	1 cut(s)	549
AluI	AGCT	1 cut(s)	549
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	2 cut(s)	411, 454
AlwI	GGATC	3 cut(s)	86, 99, 563
AoxI	GGCC	1 cut(s)	453
ApoI	RAATTY	3 cut(s)	57, 351, 739
ArsI	GACNNNNNNTTYG	2 cut(s)	516, 548
AseI	ATTAAT	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	598
BccI	CCATC	2 cut(s)	152, 285
BciVI	GTATCC	1 cut(s)	727
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	411, 454
BfaI	CTAG	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	727
BglII	AGATCT	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	93
BmsI	GCATC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	636
BpuEI	CTTGAG	2 cut(s)	41, 478
BsaI	GGTCTC	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	598
BsmAI	GTCTC	2 cut(s)	411, 454
BsnI	GGCC	1 cut(s)	455
Bso31I	GGTCTC	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp1407I	TGTACA	1 cut(s)	758
Bsp143I	GATC	8 cut(s)	9, 91, 271, 415, 568, 611, 624, 650
BspANI	GGCC	1 cut(s)	455
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	3 cut(s)	86, 99, 563
BspTNI	GGTCTC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	758
BssMI	GATC	8 cut(s)	9, 91, 271, 415, 568, 611, 624, 650
BssNAI	GTATAC	1 cut(s)	266
Bst1107I	GTATAC	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	641
Bst6I	CTCTTC	2 cut(s)	39, 132
BstAUI	TGTACA	1 cut(s)	758
BstC8I	GCNNGC	3 cut(s)	67, 228, 773
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	8 cut(s)	12, 94, 274, 418, 571, 614, 627, 653
BstMAI	GTCTC	2 cut(s)	411, 454
BstMBI	GATC	8 cut(s)	9, 91, 271, 415, 568, 611, 624, 650
BstNSI	RCATGY	2 cut(s)	69, 230
BstX2I	RGATCY	2 cut(s)	9, 91
BstYI	RGATCY	2 cut(s)	9, 91
BstZ17I	GTATAC	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	727
BsuRI	GGCC	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	163
Cac8I	GCNNGC	3 cut(s)	67, 228, 773
Csp6I	GTAC	3 cut(s)	277, 716, 759
CviAII	CATG	5 cut(s)	66, 97, 103, 227, 719
CviJI	RGCY	4 cut(s)	236, 369, 455, 549
CviKI_1	RGCY	4 cut(s)	236, 369, 455, 549
CviQI	GTAC	3 cut(s)	277, 716, 759
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	8 cut(s)	11, 93, 273, 417, 570, 613, 626, 652
DpnII	GATC	8 cut(s)	9, 91, 271, 415, 568, 611, 624, 650
Eam1104I	CTCTTC	2 cut(s)	39, 132
EarI	CTCTTC	2 cut(s)	39, 132
Eco147I	AGGCCT	1 cut(s)	455
Eco31I	GGTCTC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	269
FaeI	CATG	5 cut(s)	69, 100, 106, 230, 722
FalI	AAGNNNNNCTT	6 cut(s)	201, 233, 393, 425, 657, 689
FatI	CATG	5 cut(s)	65, 96, 102, 226, 718
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	2 cut(s)	196, 265
FokI	GGATG	1 cut(s)	170
FspBI	CTAG	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	455
Hin1II	CATG	5 cut(s)	69, 100, 106, 230, 722
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	4 cut(s)	197, 266, 343, 761
Hpy188I	TCNGA	3 cut(s)	288, 378, 415
Hpy188III	TCNNGA	6 cut(s)	119, 566, 615, 633, 654, 674
Hpy8I	GTNNAC	4 cut(s)	197, 266, 343, 761
HpyAV	CCTTC	3 cut(s)	395, 492, 706
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4V	TGCA	5 cut(s)	69, 230, 244, 434, 775
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	5 cut(s)	69, 100, 106, 230, 722
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	8 cut(s)	9, 91, 271, 415, 568, 611, 624, 650
LmnI	GCTCC	1 cut(s)	593
LpnPI	CCDG	5 cut(s)	156, 282, 600, 761, 779
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	2 cut(s)	551, 641
MalI	GATC	8 cut(s)	11, 93, 273, 417, 570, 613, 626, 652
MboI	GATC	8 cut(s)	9, 91, 271, 415, 568, 611, 624, 650
MboII	GAAGA	5 cut(s)	53, 56, 149, 410, 523
MflI	RGATCY	2 cut(s)	9, 91
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	4 cut(s)	57, 162, 351, 739
MnlI	CCTC	5 cut(s)	27, 40, 82, 442, 445
MseI	TTAA	2 cut(s)	30, 489
MslI	CAYNNNNRTG	1 cut(s)	101
NdeII	GATC	8 cut(s)	9, 91, 271, 415, 568, 611, 624, 650
NlaIII	CATG	5 cut(s)	69, 100, 106, 230, 722
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	2 cut(s)	69, 230
PaeI	GCATGC	2 cut(s)	69, 230
PceI	AGGCCT	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	489
PspN4I	GGNNCC	1 cut(s)	93
PsuI	RGATCY	2 cut(s)	9, 91
RsaI	GTAC	3 cut(s)	278, 717, 760
RsaNI	GTAC	3 cut(s)	277, 716, 759
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	30, 489
Sau3AI	GATC	8 cut(s)	9, 91, 271, 415, 568, 611, 624, 650
SduI	GDGCHC	1 cut(s)	598
SetI	ASST	9 cut(s)	38, 51, 214, 339, 551, 601, 685, 707, 717
SfaNI	GCATC	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	20, 457
SmoI	CTYRAG	2 cut(s)	20, 457
SphI	GCATGC	2 cut(s)	69, 230
Sse9I	AATT	4 cut(s)	57, 162, 351, 739
SseBI	AGGCCT	1 cut(s)	455
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	1 cut(s)	446
StuI	AGGCCT	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	641
TasI	AATT	4 cut(s)	57, 162, 351, 739
TatI	WGTACW	2 cut(s)	276, 758
Tru1I	TTAA	2 cut(s)	30, 489
Tru9I	TTAA	2 cut(s)	30, 489
TseFI	GTSAC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	5 cut(s)	133, 146, 548, 735, 768
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	3 cut(s)	57, 351, 739
XceI	RCATGY	2 cut(s)	69, 230
XmiI	GTMKAC	2 cut(s)	196, 265
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.