Rh3AG272900

transferase activity, transferring hexosyl groups

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0011608
Physical Location & Seq
Reverse (-)
31170914 .. 31173283
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG272900.1

Sequence Viewer

Length: 858 bp
ATGCCAAGAGGGTTTGCTGCTTCAAAAATAGCTTGTCGTCGATCAAAGGTAACTAAAGAATGGGTCGAGGCAAAGTATGCTTGTACAAGATTTGGGTCAAAGCGAAAAACTGATGCTCGTAACCCCCGTCCCTGCATGAAAATAGACTGCAAGGCAATGTTGCATGTCAAAAGAAGGCAAGATGGGAAATGGGTTGTTCAAAATTTTGTGAAACAGCATAATCATGAACTTTCTCCGGAGGATGTCCACTACTTTCCATGTTATAGAAACATTGCTTCTGGTGACTTGAACAATATTAGTACTTTGCATTCAGTTGGAGTGAAACCAAATCAGTACATACTTCAGAGATGGAGAAAAGATGTGAAAACAAGACACACAACAAGAGAAACTAAGATGGTTGACCCTAAAATTCAGCGTTTCAATGACTTGTTTCAGAAATACAGAAAAGTATGTGAAGAAGGGTCTCTTTCTGATCAAAAGTATGATATTGCAAAACGTTTACTAGAGGAGGCCTTGAGACAATGTGGAAGCATCAGTCCTTCTATTAATCTCAATAAAGAAATGGTGAAGAACATTGACAAAGAGAATGTCAATAATAAAGTGAGCTGTGACATTCATATTCTTGATCCAAAAGTTTCAAGCACAAAAGGAGCACCTAAAAGAATACGATCTGGAGTTGAGATCAGTTCAAGAAACGGTAACAAAAGATCAAGAAAGGCACAAGAAAATCTGGAAGTGCCTAAAAATAAGACAAAAAATACCTTACAGAAGGTACATGAAAAAGTAGGGGATACAAATTTTGATAATAATGAATGTACACAAGACTGCTTGCAGGATATTGGGAATACGCTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00904 ko01100 ko01110 map00904 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

285

Amino Acids

32.91

Weight (kDa)

9.71

Isoelectric Point (pI)

64.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 4 - 78 1.4e-19 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 235
AclI AACGTT 1 cut(s) 496
AclWI GGATC 1 cut(s) 620
AcsI RAATTY 3 cut(s) 202, 408, 796
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 5 cut(s) 85, 301, 335, 774, 817
AgsI TTSAA 6 cut(s) 24, 200, 289, 421, 639, 690
AluBI AGCT 2 cut(s) 32, 606
AluI AGCT 2 cut(s) 32, 606
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 2 cut(s) 468, 511
AlwI GGATC 1 cut(s) 620
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 3 cut(s) 202, 408, 796
ArsI GACNNNNNNTTYG 2 cut(s) 573, 605
AseI ATTAAT 1 cut(s) 546
AsuHPI GGTGA 2 cut(s) 293, 577
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 1 cut(s) 4
BccI CCATC 3 cut(s) 176, 342, 388
BciVI GTATCC 1 cut(s) 784
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 468, 511
BfaI CTAG 1 cut(s) 503
BfuI GTATCC 1 cut(s) 784
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmcAI AGTACT 1 cut(s) 301
BmsI GCATC 2 cut(s) 103, 540
BpmI CTGGAG 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 535
BsaI GGTCTC 1 cut(s) 468
BsaWI WCCGGW 1 cut(s) 235
Bse3DI GCAATG 2 cut(s) 162, 270
BseAI TCCGGA 1 cut(s) 235
BseGI GGATG 1 cut(s) 247
BseMI GCAATG 2 cut(s) 162, 270
BseRI GAGGAG 1 cut(s) 521
BseXI GCAGC 1 cut(s) 4
BshFI GGCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 655
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 468, 511
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 1 cut(s) 512
Bso31I GGTCTC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 655
Bsp13I TCCGGA 1 cut(s) 235
Bsp1407I TGTACA 2 cut(s) 83, 815
Bsp143I GATC 6 cut(s) 41, 472, 625, 668, 681, 707
BspANI GGCC 1 cut(s) 512
BspEI TCCGGA 1 cut(s) 235
BspHI TCATGA 1 cut(s) 223
BspPI GGATC 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 468
BsrDI GCAATG 2 cut(s) 162, 270
BsrGI TGTACA 2 cut(s) 83, 815
BssMI GATC 6 cut(s) 41, 472, 625, 668, 681, 707
Bst4CI ACNGT 1 cut(s) 698
BstAPI GCANNNNNTGC 1 cut(s) 77
BstAUI TGTACA 2 cut(s) 83, 815
BstC8I GCNNGC 1 cut(s) 830
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 6 cut(s) 44, 475, 628, 671, 684, 710
BstMAI GTCTC 2 cut(s) 468, 511
BstMBI GATC 6 cut(s) 41, 472, 625, 668, 681, 707
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 4
BsuI GTATCC 1 cut(s) 784
BsuRI GGCC 1 cut(s) 512
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 830
CciI TCATGA 1 cut(s) 223
Csp6I GTAC 5 cut(s) 84, 300, 334, 773, 816
CviAII CATG 5 cut(s) 136, 164, 224, 258, 776
CviJI RGCY 3 cut(s) 32, 512, 606
CviKI_1 RGCY 3 cut(s) 32, 512, 606
CviQI GTAC 5 cut(s) 84, 300, 334, 773, 816
DdeI CTNAG 1 cut(s) 390
DpnI GATC 6 cut(s) 43, 474, 627, 670, 683, 709
DpnII GATC 6 cut(s) 41, 472, 625, 668, 681, 707
Eco147I AGGCCT 1 cut(s) 512
Eco31I GGTCTC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 326
FaeI CATG 5 cut(s) 139, 167, 227, 261, 779
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 1 cut(s) 114
FatI CATG 5 cut(s) 135, 163, 223, 257, 775
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 503
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 1 cut(s) 512
HapII CCGG 1 cut(s) 236
Hin1II CATG 5 cut(s) 139, 167, 227, 261, 779
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HpaII CCGG 1 cut(s) 236
HphI GGTGA 2 cut(s) 293, 577
Hpy166II GTNNAC 4 cut(s) 247, 400, 500, 818
Hpy188I TCNGA 3 cut(s) 345, 435, 472
Hpy188III TCNNGA 7 cut(s) 224, 236, 623, 672, 690, 711, 731
Hpy8I GTNNAC 4 cut(s) 247, 400, 500, 818
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 4 cut(s) 168, 452, 549, 763
HpyCH4III ACNGT 1 cut(s) 698
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 6 cut(s) 135, 150, 163, 307, 491, 832
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 5 cut(s) 139, 167, 227, 261, 779
Kpn2I TCCGGA 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 6 cut(s) 41, 472, 625, 668, 681, 707
LmnI GCTCC 1 cut(s) 650
LpnPI CCDG 7 cut(s) 145, 249, 264, 657, 716, 818, 836
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 2 cut(s) 103, 540
MaeI CTAG 1 cut(s) 503
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 5 cut(s) 49, 119, 281, 608, 698
MalI GATC 6 cut(s) 43, 474, 627, 670, 683, 709
MboI GATC 6 cut(s) 41, 472, 625, 668, 681, 707
MboII GAAGA 2 cut(s) 467, 580
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 3 cut(s) 202, 408, 796
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 4 cut(s) 61, 232, 499, 502
MroI TCCGGA 1 cut(s) 235
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 6 cut(s) 41, 472, 625, 668, 681, 707
NlaIII CATG 5 cut(s) 139, 167, 227, 261, 779
NmuCI GTSAC 2 cut(s) 281, 608
NspI RCATGY 1 cut(s) 167
PagI TCATGA 1 cut(s) 223
PceI AGGCCT 1 cut(s) 512
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PctI GAATGC 1 cut(s) 307
PkrI GCNGC 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 546
Psp1406I AACGTT 1 cut(s) 496
RsaI GTAC 5 cut(s) 85, 301, 335, 774, 817
RsaNI GTAC 5 cut(s) 84, 300, 334, 773, 816
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 6 cut(s) 41, 472, 625, 668, 681, 707
ScaI AGTACT 1 cut(s) 301
SduI GDGCHC 1 cut(s) 655
SetI ASST 7 cut(s) 34, 51, 499, 608, 658, 764, 774
SfaNI GCATC 2 cut(s) 103, 540
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
Sse9I AATT 3 cut(s) 202, 408, 796
SseBI AGGCCT 1 cut(s) 512
SspI AATATT 1 cut(s) 295
SspMI CTAG 1 cut(s) 503
StuI AGGCCT 1 cut(s) 512
TaaI ACNGT 1 cut(s) 698
TaiI ACGT 1 cut(s) 499
TaqI TCGA 2 cut(s) 40, 66
TasI AATT 3 cut(s) 202, 408, 796
TatI WGTACW 4 cut(s) 83, 299, 333, 815
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TseFI GTSAC 2 cut(s) 281, 608
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 2 cut(s) 281, 608
TspDTI ATGAA 5 cut(s) 152, 240, 605, 792, 825
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 3 cut(s) 202, 408, 796
XceI RCATGY 1 cut(s) 167
XspI CTAG 1 cut(s) 503
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.