Rh2BG067100

transferase activity, transferring hexosyl groups

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011608
Physical Location & Seq
Forward (+)
5088337 .. 5091178
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG067100.1

Sequence Viewer

Length: 975 bp
ATGGGGCTGGAAATAGACATAAATTTGGCTGCTGAGGAAGATGATAATTATAATGAAGATGACATGAATGATGATAATTATTATGAAGATGGTATGAATGACGATAATTATAATGAAGATGGTGTAGGAGAAGAATTTGGTCATAGTAATGGTGGTGAAAGCTCCATTAATATGAAAAAAAATTCAGAGCCATATGTTGGAATGGAATTTAATTCTGATGGCATTGCACAGTCATTTTATTTAGAGTATGCCAAGATGACAGGGTTTGCTGCTTCAAAAATAGCTTGTCGTCGATCAAAGGTAACTAAAGAATGGGTCGAGGCAAAGTATGCTTGTACAAGATTTGGGTCAAAGCGAAAAACTGACGCTCGTAACCCCCGTCCCTGCATGAAAATAGACTGCAAGGCAATGTTGCATGTCAAAAGAAGGCAAGATGGGAAATGGGTTGTTCAAAATTTTGTGAAAGAGCATAATCATGAACTTTCTCCGGAGGATGTCCACTACTTTCCATGTTATAGAAACATTGCTTCTGGTGACTTGAACAATATTAGTACTTTGCATTCAGTTGGAGTGAAACCAAATCAGTACATACTTCAGAGATGGAGAAAAGATGTGAAAACAAGACACACAACAAGAGAAACTAAGATGGTTGACCCTAAAATTCAGCGTTTCAATGACTTGTTTCAGAAATACAGAAAAGTATGTGAAGAAGGGTCTCTTTCTGATCAAAAGTATGATATTGCAAAACGTTTACTAGAGGAGGCCTTGAGACAATGTGGAAGCATCAGTCCTTCTATTAATCTCAATAAAGAAATGGTGAAGAACATTGACAAAGAGAATGTCAATAATAAAGTGAGCTGTGACATTCATATTCTTGATCCAAAAGTTTCAAGCACAAAAGGAGCACCTAAAAGAATACGATCTGGAGTTGAGATCAGTTCAAGAAACGGCACAAGAAAATCTGGAAGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00904 ko01100 ko01110 map00904 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

324

Amino Acids

37.12

Weight (kDa)

8.0

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 78 - 162 6e-25 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 51, 111
AccB7I CCANNNNNTGG 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 487
AclI AACGTT 1 cut(s) 748
AclWI GGATC 1 cut(s) 872
AcsI RAATTY 6 cut(s) 22, 134, 181, 206, 454, 660
AcuI CTGAAG 1 cut(s) 578
AfaI GTAC 4 cut(s) 337, 553, 587, 970
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 6 cut(s) 276, 452, 541, 673, 891, 942
AluBI AGCT 3 cut(s) 162, 284, 858
AluI AGCT 3 cut(s) 162, 284, 858
Alw21I GWGCWC 1 cut(s) 907
Alw26I GTCTC 2 cut(s) 720, 763
AlwI GGATC 1 cut(s) 872
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 1 cut(s) 762
ApeKI GCWGC 2 cut(s) 29, 269
ApoI RAATTY 6 cut(s) 22, 134, 181, 206, 454, 660
ArsI GACNNNNNNTTYG 2 cut(s) 825, 857
AseI ATTAAT 2 cut(s) 168, 798
AsuHPI GGTGA 3 cut(s) 167, 545, 829
Bbv12I GWGCWC 1 cut(s) 907
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 16, 256
BccI CCATC 6 cut(s) 83, 113, 212, 428, 594, 640
BceAI ACGGC 1 cut(s) 964
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 2 cut(s) 720, 763
BfaI CTAG 1 cut(s) 755
BisI GCNGC 2 cut(s) 30, 270
BlsI GCNGC 2 cut(s) 31, 271
BmcAI AGTACT 1 cut(s) 553
BmsI GCATC 1 cut(s) 792
BpmI CTGGAG 1 cut(s) 945
Bpu10I CCTNAGC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 787
BsaI GGTCTC 1 cut(s) 720
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse3DI GCAATG 3 cut(s) 222, 414, 522
BseAI TCCGGA 1 cut(s) 487
BseGI GGATG 1 cut(s) 499
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 3 cut(s) 222, 414, 522
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 2 cut(s) 16, 256
BshFI GGCC 1 cut(s) 764
BsiHKAI GWGCWC 1 cut(s) 907
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 2 cut(s) 720, 763
BsmFI GGGAC 1 cut(s) 366
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 1 cut(s) 764
Bso31I GGTCTC 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 907
Bsp13I TCCGGA 1 cut(s) 487
Bsp1407I TGTACA 1 cut(s) 335
Bsp143I GATC 5 cut(s) 293, 724, 877, 920, 933
BspANI GGCC 1 cut(s) 764
BspCNI CTCAG 1 cut(s) 25
BspEI TCCGGA 1 cut(s) 487
BspHI TCATGA 1 cut(s) 475
BspPI GGATC 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 720
BsrDI GCAATG 3 cut(s) 222, 414, 522
BsrGI TGTACA 1 cut(s) 335
BssMI GATC 5 cut(s) 293, 724, 877, 920, 933
Bst4CI ACNGT 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 33, 642
BstF5I GGATG 1 cut(s) 499
BstKTI GATC 5 cut(s) 296, 727, 880, 923, 936
BstMAI GTCTC 2 cut(s) 720, 763
BstMBI GATC 5 cut(s) 293, 724, 877, 920, 933
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 16, 256
BsuRI GGCC 1 cut(s) 764
BtsCI GGATG 1 cut(s) 499
CciI TCATGA 1 cut(s) 475
CseI GACGC 1 cut(s) 374
Csp6I GTAC 4 cut(s) 336, 552, 586, 969
CviAII CATG 5 cut(s) 64, 388, 416, 476, 510
CviJI RGCY 7 cut(s) 7, 29, 162, 190, 284, 764, 858
CviKI_1 RGCY 7 cut(s) 7, 29, 162, 190, 284, 764, 858
CviQI GTAC 4 cut(s) 336, 552, 586, 969
DdeI CTNAG 2 cut(s) 33, 642
DpnI GATC 5 cut(s) 295, 726, 879, 922, 935
DpnII GATC 5 cut(s) 293, 724, 877, 920, 933
Eco147I AGGCCT 1 cut(s) 764
Eco31I GGTCTC 1 cut(s) 720
Eco57I CTGAAG 1 cut(s) 578
FaeI CATG 5 cut(s) 67, 391, 419, 479, 513
FalI AAGNNNNNCTT 2 cut(s) 702, 734
FaqI GGGAC 1 cut(s) 366
FatI CATG 5 cut(s) 63, 387, 415, 475, 509
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 2 cut(s) 30, 270
FokI GGATG 1 cut(s) 506
Fsp4HI GCNGC 2 cut(s) 30, 270
FspBI CTAG 1 cut(s) 755
GluI GCNGC 2 cut(s) 30, 270
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 1 cut(s) 764
HapII CCGG 1 cut(s) 488
HgaI GACGC 1 cut(s) 374
Hin1II CATG 5 cut(s) 67, 391, 419, 479, 513
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HpaII CCGG 1 cut(s) 488
HphI GGTGA 3 cut(s) 167, 545, 829
Hpy166II GTNNAC 3 cut(s) 499, 652, 752
Hpy188I TCNGA 5 cut(s) 187, 217, 597, 687, 724
Hpy188III TCNNGA 6 cut(s) 476, 488, 875, 924, 942, 963
Hpy8I GTNNAC 3 cut(s) 499, 652, 752
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 3 cut(s) 420, 704, 801
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 748
HpyCH4V TGCA 6 cut(s) 227, 387, 402, 415, 559, 743
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 33, 642
HpySE526I ACGT 1 cut(s) 748
Hsp92II CATG 5 cut(s) 67, 391, 419, 479, 513
Kpn2I TCCGGA 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 5 cut(s) 293, 724, 877, 920, 933
LmnI GCTCC 2 cut(s) 167, 902
LpnPI CCDG 6 cut(s) 246, 397, 501, 516, 909, 948
Lsp1109I GCAGC 2 cut(s) 16, 256
LweI GCATC 1 cut(s) 792
MaeI CTAG 1 cut(s) 755
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 4 cut(s) 301, 371, 533, 860
MalI GATC 5 cut(s) 295, 726, 879, 922, 935
MboI GATC 5 cut(s) 293, 724, 877, 920, 933
MboII GAAGA 7 cut(s) 50, 68, 98, 128, 143, 719, 832
MhlI GDGCHC 1 cut(s) 907
MmeI TCCRAC 2 cut(s) 178, 547
MnlI CCTC 5 cut(s) 28, 313, 484, 751, 754
MroI TCCGGA 1 cut(s) 487
MseI TTAA 3 cut(s) 168, 210, 798
MslI CAYNNNNRTG 3 cut(s) 147, 170, 474
MspI CCGG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 559
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeI CATATG 1 cut(s) 193
NdeII GATC 5 cut(s) 293, 724, 877, 920, 933
NlaIII CATG 5 cut(s) 67, 391, 419, 479, 513
NmuCI GTSAC 2 cut(s) 533, 860
NspI RCATGY 1 cut(s) 419
PagI TCATGA 1 cut(s) 475
PceI AGGCCT 1 cut(s) 764
PcsI WCGNNNNNNNCGW 1 cut(s) 376
PctI GAATGC 1 cut(s) 559
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 2 cut(s) 31, 271
PshBI ATTAAT 2 cut(s) 168, 798
PsiI TTATAA 2 cut(s) 51, 111
Psp1406I AACGTT 1 cut(s) 748
RsaI GTAC 4 cut(s) 337, 553, 587, 970
RsaNI GTAC 4 cut(s) 336, 552, 586, 969
RseI CAYNNNNRTG 3 cut(s) 147, 170, 474
SaqAI TTAA 3 cut(s) 168, 210, 798
SatI GCNGC 2 cut(s) 30, 270
Sau3AI GATC 5 cut(s) 293, 724, 877, 920, 933
ScaI AGTACT 1 cut(s) 553
SduI GDGCHC 1 cut(s) 907
SetI ASST 7 cut(s) 164, 286, 303, 751, 860, 910, 974
SfaNI GCATC 1 cut(s) 792
SmiMI CAYNNNNRTG 3 cut(s) 147, 170, 474
SmlI CTYRAG 1 cut(s) 766
SmoI CTYRAG 1 cut(s) 766
SseBI AGGCCT 1 cut(s) 764
SspI AATATT 1 cut(s) 547
SspMI CTAG 1 cut(s) 755
StuI AGGCCT 1 cut(s) 764
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 1 cut(s) 751
TaqI TCGA 2 cut(s) 292, 318
TatI WGTACW 3 cut(s) 335, 551, 585
Tru1I TTAA 3 cut(s) 168, 210, 798
Tru9I TTAA 3 cut(s) 168, 210, 798
TseFI GTSAC 2 cut(s) 533, 860
TseI GCWGC 2 cut(s) 29, 269
Tsp45I GTSAC 2 cut(s) 533, 860
TspDTI ATGAA 9 cut(s) 69, 80, 99, 110, 129, 188, 404, 492, 857
Van91I CCANNNNNTGG 1 cut(s) 197
VspI ATTAAT 2 cut(s) 168, 798
XapI RAATTY 6 cut(s) 22, 134, 181, 206, 454, 660
XceI RCATGY 1 cut(s) 419
XspI CTAG 1 cut(s) 755
ZrmI AGTACT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.