Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011608

Physical Location & Seq

Genomic Coordinates Reverse (-)

71886609 .. 71888307

Gene Structure 1699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCAAAGATCTACACACTTGAGATTTTTAAGAGGTTTGAAGAAGAGGTTTTGGGAATTTCAGCATGCAATCCTATAAAACAAAAGGAGGATCCCATGACCATGACTTTTAGAGTTCAAGATTTTGGAATGAAAGAAAAGTTCATTGTAGCTATGGATGGAAGCACAGGAGATGTATCTTGTTTATGTCGTCTACTTGAATACAAAGGTTTTCTTTGTAGGCATGCAATGGCTATATTGCAAAATTTTGGTATTTTTTGTATACCAGATCAGTACATGCTTCAGAGATGGAGAAAAGATGTGAAAACAAGACGCACAACAAGAGAAACTAAGGTGGTTGACCCTAAAATTCGGCGTTTCAATGACTTGTTTCAGAAATACAGAAAAGTATGTGAAGAAGGGTCTCTTTCTAATCAAAAGTATGATATTGCAAAACGTTTACTAGAGGAGGCCTTGAGACAATGTGGCAGCATCAATCATTCTATTAATGTCAATAAAGAAATGGCACAAGAAAATCTGGCAGTACCTAAAGATAAGTCAAAAAATCCCTTACAGAAGGTACATGAAAAAGTAGGGGATACAAATTTTGATAATAATGAAAGTACACAAGACTGCTTGCAGGATATTGTTAGAAACATGGATGACAGTGACAATGTCAAAGAAGAAGTCTTTAAGGAATATCTCCGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

231

Amino Acids

27.06

Weight (kDa)

8.34

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011608)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g28210
rosa_laevigata	RLG00000035802
rosa_multiflora	Rmu_sc0000685.1_g000014 Rmu_sc0001719.1_g000008 Rmu_sc0005507.1_g000039 Rmu_sc0006005.1_g000001 Rmu_sc0026606.1_g000001
rosa_rugosa	Rorug01G0223400 Rorug03G0333200 Rorug03G0333500
rosa_samantha	Rh1AG260800 Rh2BG067100 Rh2CG068400 Rh2CG538900 Rh2DG411000 Rh3AG272900 Rh5BG325800 Rh6BG198100 Rh7AG279400 Rh7CG298600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	193, 262
AclI	AACGTT	1 cut(s)	436
AclWI	GGATC	2 cut(s)	86, 99
AcsI	RAATTY	4 cut(s)	57, 244, 348, 583
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	4 cut(s)	275, 525, 561, 604
AgsI	TTSAA	4 cut(s)	41, 119, 200, 361
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw26I	GTCTC	2 cut(s)	408, 451
AlwI	GGATC	2 cut(s)	86, 99
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	1 cut(s)	468
ApoI	RAATTY	4 cut(s)	57, 244, 348, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	651, 683
AseI	ATTAAT	1 cut(s)	486
BamHI	GGATCC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	480
BccI	CCATC	3 cut(s)	152, 282, 681
BciVI	GTATCC	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	408, 451
BfaI	CTAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	571
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	1 cut(s)	469
BlsI	GCNGC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	93
BmsI	GCATC	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	41, 475
BsaI	GGTCTC	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	163, 646
BseMI	GCAATG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	480
BshFI	GGCC	1 cut(s)	452
BsmAI	GTCTC	2 cut(s)	408, 451
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	9, 91, 268
BspANI	GGCC	1 cut(s)	452
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	2 cut(s)	86, 99
BspTNI	GGTCTC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	234
BssMI	GATC	3 cut(s)	9, 91, 268
BssNAI	GTATAC	1 cut(s)	263
Bst1107I	GTATAC	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	67, 225, 617
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	163, 646
BstKTI	GATC	3 cut(s)	12, 94, 271
BstMAI	GTCTC	2 cut(s)	408, 451
BstMBI	GATC	3 cut(s)	9, 91, 268
BstNSI	RCATGY	3 cut(s)	69, 227, 280
BstV1I	GCAGC	1 cut(s)	480
BstX2I	RGATCY	2 cut(s)	9, 91
BstYI	RGATCY	2 cut(s)	9, 91
BstZ17I	GTATAC	1 cut(s)	263
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	163, 646
BtsIMutI	CAGTG	1 cut(s)	652
Cac8I	GCNNGC	3 cut(s)	67, 225, 617
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	4 cut(s)	274, 524, 560, 603
CviAII	CATG	7 cut(s)	66, 97, 103, 224, 277, 563, 637
CviJI	RGCY	3 cut(s)	152, 233, 452
CviKI_1	RGCY	3 cut(s)	152, 233, 452
CviQI	GTAC	4 cut(s)	274, 524, 560, 603
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	11, 93, 270
DpnII	GATC	3 cut(s)	9, 91, 268
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	266
FaeI	CATG	7 cut(s)	69, 100, 106, 227, 280, 566, 640
FalI	AAGNNNNNCTT	4 cut(s)	198, 230, 390, 422
FatI	CATG	7 cut(s)	65, 96, 102, 223, 276, 562, 636
FblI	GTMKAC	2 cut(s)	193, 262
Fnu4HI	GCNGC	1 cut(s)	469
FokI	GGATG	2 cut(s)	170, 653
Fsp4HI	GCNGC	1 cut(s)	469
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	1 cut(s)	469
HaeIII	GGCC	1 cut(s)	452
HgaI	GACGC	1 cut(s)	321
Hin1II	CATG	7 cut(s)	69, 100, 106, 227, 280, 566, 640
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
Hpy166II	GTNNAC	5 cut(s)	194, 263, 340, 440, 605
Hpy188I	TCNGA	3 cut(s)	285, 375, 686
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	5 cut(s)	194, 263, 340, 440, 605
HpyAV	CCTTC	2 cut(s)	392, 550
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	69, 227, 241, 431, 619
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	7 cut(s)	69, 100, 106, 227, 280, 566, 640
Kzo9I	GATC	3 cut(s)	9, 91, 268
LpnPI	CCDG	4 cut(s)	153, 279, 503, 605
Lsp1109I	GCAGC	1 cut(s)	480
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	3 cut(s)	11, 93, 270
MboI	GATC	3 cut(s)	9, 91, 268
MboII	GAAGA	4 cut(s)	53, 56, 407, 674
MflI	RGATCY	2 cut(s)	9, 91
MluCI	AATT	4 cut(s)	57, 244, 348, 583
MnlI	CCTC	5 cut(s)	27, 40, 82, 439, 442
MseI	TTAA	3 cut(s)	30, 486, 672
MslI	CAYNNNNRTG	1 cut(s)	101
NdeII	GATC	3 cut(s)	9, 91, 268
NlaIII	CATG	7 cut(s)	69, 100, 106, 227, 280, 566, 640
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	647
NspI	RCATGY	3 cut(s)	69, 227, 280
PaeI	GCATGC	2 cut(s)	69, 227
PceI	AGGCCT	1 cut(s)	452
PflFI	GACNNNGTC	1 cut(s)	653
PkrI	GCNGC	1 cut(s)	470
PshBI	ATTAAT	1 cut(s)	486
Psp1406I	AACGTT	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	93
PsuI	RGATCY	2 cut(s)	9, 91
PsyI	GACNNNGTC	1 cut(s)	653
RsaI	GTAC	4 cut(s)	275, 525, 561, 604
RsaNI	GTAC	4 cut(s)	274, 524, 560, 603
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	30, 486, 672
SatI	GCNGC	1 cut(s)	469
Sau3AI	GATC	3 cut(s)	9, 91, 268
SetI	ASST	8 cut(s)	38, 51, 154, 211, 336, 439, 529, 561
SfaNI	GCATC	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	20, 454
SmoI	CTYRAG	2 cut(s)	20, 454
SphI	GCATGC	2 cut(s)	69, 227
Sse9I	AATT	4 cut(s)	57, 244, 348, 583
SseBI	AGGCCT	1 cut(s)	452
SspMI	CTAG	1 cut(s)	443
StuI	AGGCCT	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	647
TaiI	ACGT	1 cut(s)	439
TasI	AATT	4 cut(s)	57, 244, 348, 583
TatI	WGTACW	2 cut(s)	273, 602
Tru1I	TTAA	3 cut(s)	30, 486, 672
Tru9I	TTAA	3 cut(s)	30, 486, 672
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	1 cut(s)	468
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	4 cut(s)	133, 146, 579, 612
TspRI	CASTG	1 cut(s)	652
Tth111I	GACNNNGTC	1 cut(s)	653
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	4 cut(s)	57, 244, 348, 583
XceI	RCATGY	3 cut(s)	69, 227, 280
XmiI	GTMKAC	2 cut(s)	193, 262
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.