Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011608

Physical Location & Seq

Genomic Coordinates Reverse (-)

48258064 .. 48259148

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG260800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCAAAGATCTACACACTTGAGATTTTTAAGAGGTTTGAAGAAGAAATTTTGGGAATTTCAGCATGCAATCCTATAAAACAAAAGGAGGATCCCATGACCATGACTTTTAGAGTTCAAGATTTTGGAATGAAAGAAGAGTTCATTGTAGCTGTGGATGGAAGCACAGGAGATGTATCTTGTTTATGTCGTCTACTTGAATACAAAGGTTTTCTTTGTAGGCATACAATGGCTATATTGCAAAATTTTGGTATTTTTTGTATACCAGATCAATACATACTTCAGAGATGGAGAAAAGATGTGAAAACAAGACACACAACAAGAGAAACTAAGGTGGTTGACCCTAAAATTCGGCGTTTCAATGACTTGTTTCAGAAATACAGAAAAGTATGTGAAGAAGGGTCTCTTTCTGATCAAAAGTATGATATTGCAAAACGTTTACTAGAGGAGGCCTTGAGACAATGTGGAAGCATCACTCATTCTATTAATGTCAATAAAGAAATGGTGAAGAACATTGACAAAGAGAATGTCAATAATAAAGTGAGCTGTGGCATCCATATTCTTGATCCAAAAGTTTCAAGCACAAAAGGAGCACCTAAAAGAATACGATCTGGAGTTGAGATCAGTTCAAGAAACGGTAACAAAAGATCAAGAAAGGCACAAGAAAATCTGGAAGTACCTAAAGATAAGACAAAAAATACCTTACAGAAGGTACATGAAAAAGTAGGGGATACAAATTTTGATAATAATGAAAGTACACAAGACTGCTGGCAGGATATTGGGAATATGCTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

265

Amino Acids

30.65

Weight (kDa)

8.96

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011608)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g28210
rosa_laevigata	RLG00000035802
rosa_multiflora	Rmu_sc0000685.1_g000014 Rmu_sc0001719.1_g000008 Rmu_sc0005507.1_g000039 Rmu_sc0006005.1_g000001 Rmu_sc0026606.1_g000001
rosa_rugosa	Rorug01G0223400 Rorug03G0333200 Rorug03G0333500
rosa_samantha	Rh1AG260800 Rh2BG067100 Rh2CG068400 Rh2CG538900 Rh2DG411000 Rh3AG272900 Rh5BG325800 Rh6BG198100 Rh7AG279400 Rh7CG298600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	193, 262
AclI	AACGTT	1 cut(s)	436
AclWI	GGATC	3 cut(s)	86, 99, 560
AcsI	RAATTY	5 cut(s)	48, 57, 244, 348, 736
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	3 cut(s)	678, 714, 757
AgsI	TTSAA	6 cut(s)	41, 119, 200, 361, 579, 630
AluBI	AGCT	2 cut(s)	152, 546
AluI	AGCT	2 cut(s)	152, 546
Alw21I	GWGCWC	1 cut(s)	595
Alw26I	GTCTC	2 cut(s)	408, 451
AlwI	GGATC	3 cut(s)	86, 99, 560
AoxI	GGCC	1 cut(s)	450
ApoI	RAATTY	5 cut(s)	48, 57, 244, 348, 736
ArsI	GACNNNNNNTTYG	2 cut(s)	513, 545
AseI	ATTAAT	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	517
BamHI	GGATCC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	595
BccI	CCATC	2 cut(s)	152, 282
BciVI	GTATCC	1 cut(s)	724
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	408, 451
BfaI	CTAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	724
BglII	AGATCT	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	93
BmsI	GCATC	2 cut(s)	480, 561
BpmI	CTGGAG	1 cut(s)	633
BpuEI	CTTGAG	2 cut(s)	41, 475
BsaI	GGTCTC	1 cut(s)	408
BseGI	GGATG	2 cut(s)	163, 552
BseRI	GAGGAG	1 cut(s)	461
BshFI	GGCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	595
BsmAI	GTCTC	2 cut(s)	408, 451
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp143I	GATC	8 cut(s)	9, 91, 268, 412, 565, 608, 621, 647
BspANI	GGCC	1 cut(s)	452
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	3 cut(s)	86, 99, 560
BspTNI	GGTCTC	1 cut(s)	408
BssMI	GATC	8 cut(s)	9, 91, 268, 412, 565, 608, 621, 647
BssNAI	GTATAC	1 cut(s)	263
Bst1107I	GTATAC	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	638
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	67, 770
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	163, 552
BstKTI	GATC	8 cut(s)	12, 94, 271, 415, 568, 611, 624, 650
BstMAI	GTCTC	2 cut(s)	408, 451
BstMBI	GATC	8 cut(s)	9, 91, 268, 412, 565, 608, 621, 647
BstNSI	RCATGY	1 cut(s)	69
BstX2I	RGATCY	2 cut(s)	9, 91
BstYI	RGATCY	2 cut(s)	9, 91
BstZ17I	GTATAC	1 cut(s)	263
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	163, 552
Cac8I	GCNNGC	2 cut(s)	67, 770
Csp6I	GTAC	3 cut(s)	677, 713, 756
CviAII	CATG	4 cut(s)	66, 97, 103, 716
CviJI	RGCY	4 cut(s)	152, 233, 452, 546
CviKI_1	RGCY	4 cut(s)	152, 233, 452, 546
CviQI	GTAC	3 cut(s)	677, 713, 756
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	8 cut(s)	11, 93, 270, 414, 567, 610, 623, 649
DpnII	GATC	8 cut(s)	9, 91, 268, 412, 565, 608, 621, 647
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	266
FaeI	CATG	4 cut(s)	69, 100, 106, 719
FalI	AAGNNNNNCTT	4 cut(s)	198, 230, 390, 422
FatI	CATG	4 cut(s)	65, 96, 102, 715
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	2 cut(s)	193, 262
FokI	GGATG	2 cut(s)	170, 539
FspBI	CTAG	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	1 cut(s)	452
Hin1II	CATG	4 cut(s)	69, 100, 106, 719
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	5 cut(s)	194, 263, 340, 440, 758
Hpy188I	TCNGA	3 cut(s)	285, 375, 412
Hpy188III	TCNNGA	6 cut(s)	119, 563, 612, 630, 651, 671
Hpy8I	GTNNAC	5 cut(s)	194, 263, 340, 440, 758
HpyAV	CCTTC	2 cut(s)	392, 703
HpyCH4III	ACNGT	1 cut(s)	638
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	3 cut(s)	69, 241, 431
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	4 cut(s)	69, 100, 106, 719
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	8 cut(s)	9, 91, 268, 412, 565, 608, 621, 647
LmnI	GCTCC	1 cut(s)	590
LpnPI	CCDG	7 cut(s)	153, 279, 597, 656, 754, 758, 776
LweI	GCATC	2 cut(s)	480, 561
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	638
MalI	GATC	8 cut(s)	11, 93, 270, 414, 567, 610, 623, 649
MboI	GATC	8 cut(s)	9, 91, 268, 412, 565, 608, 621, 647
MboII	GAAGA	5 cut(s)	53, 56, 149, 407, 520
MflI	RGATCY	2 cut(s)	9, 91
MhlI	GDGCHC	1 cut(s)	595
MluCI	AATT	5 cut(s)	48, 57, 244, 348, 736
MnlI	CCTC	4 cut(s)	27, 82, 439, 442
MseI	TTAA	2 cut(s)	30, 486
MslI	CAYNNNNRTG	1 cut(s)	101
NdeII	GATC	8 cut(s)	9, 91, 268, 412, 565, 608, 621, 647
NlaIII	CATG	4 cut(s)	69, 100, 106, 719
NlaIV	GGNNCC	1 cut(s)	93
NspI	RCATGY	1 cut(s)	69
PaeI	GCATGC	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	452
PshBI	ATTAAT	1 cut(s)	486
Psp1406I	AACGTT	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	93
PsuI	RGATCY	2 cut(s)	9, 91
RsaI	GTAC	3 cut(s)	678, 714, 757
RsaNI	GTAC	3 cut(s)	677, 713, 756
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	30, 486
Sau3AI	GATC	8 cut(s)	9, 91, 268, 412, 565, 608, 621, 647
SduI	GDGCHC	1 cut(s)	595
SfaNI	GCATC	2 cut(s)	480, 561
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	20, 454
SmoI	CTYRAG	2 cut(s)	20, 454
SphI	GCATGC	1 cut(s)	69
Sse9I	AATT	5 cut(s)	48, 57, 244, 348, 736
SseBI	AGGCCT	1 cut(s)	452
SspMI	CTAG	1 cut(s)	443
StuI	AGGCCT	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	638
TaiI	ACGT	1 cut(s)	439
TasI	AATT	5 cut(s)	48, 57, 244, 348, 736
TatI	WGTACW	1 cut(s)	755
Tru1I	TTAA	2 cut(s)	30, 486
Tru9I	TTAA	2 cut(s)	30, 486
TspDTI	ATGAA	4 cut(s)	133, 146, 732, 765
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	5 cut(s)	48, 57, 244, 348, 736
XceI	RCATGY	1 cut(s)	69
XmiI	GTMKAC	2 cut(s)	193, 262
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.