Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005507.1

Orthogroup ID

OG0011608

Physical Location & Seq

Genomic Coordinates Reverse (-)

160898 .. 161641

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005507.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atggggctggaaatagacataaatttggctgctgaggaagatgataattataatgaagatgacatggatgatgataattataatgaagatggtatgaatgacgataattataatgaagatggtgtaggagaagaatgtggtcatagtaatggtggtgaaagctccattaatatgaaaaaaaattcaaagccatatgttggaatggactttgattctgatggcattgcacagtcattttatttagagtatgccaagatgacagggtttgctgcttcaaaaatagcttgtcgtcgatcaaaggtaactaaagaatgggtcgaggcaaagtatgcttgtacaagatttgggacaaagcgaaaaaatgacgctcgtaaccctcgtccctacatgaaaatagactgcaaggcaatgttgcatgtcaaaagaaggcaagatgggaaatgggttgttcaaaattttgtgaaagagcataattatgaactttctccggaggatgtccactactttccatgttatagaaacattgcttttggtgacttgaacaatattagtactttgtattcagttggagtgaaaccaagtaagatttttgctgcttcagccaaacagtgtggaggatatcaaaacattggttttttacaaaaagacatgagaaattttttggataagaaacgtcagttagaattggaatctggcgatgctaaggcaatgttggagcattttattagtatgcaagaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

247

Amino Acids

28.26

Weight (kDa)

5.11

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011608)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g28210
rosa_laevigata	RLG00000035802
rosa_multiflora	Rmu_sc0000685.1_g000014 Rmu_sc0001719.1_g000008 Rmu_sc0005507.1_g000039 Rmu_sc0006005.1_g000001 Rmu_sc0026606.1_g000001
rosa_rugosa	Rorug01G0223400 Rorug03G0333200 Rorug03G0333500
rosa_samantha	Rh1AG260800 Rh2BG067100 Rh2CG068400 Rh2CG538900 Rh2DG411000 Rh3AG272900 Rh5BG325800 Rh6BG198100 Rh7AG279400 Rh7CG298600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	51, 81, 111
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccIII	TCCGGA	1 cut(s)	487
AcsI	RAATTY	4 cut(s)	22, 181, 454, 655
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	337, 553
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	186, 276, 452, 541
AluBI	AGCT	2 cut(s)	162, 284
AluI	AGCT	2 cut(s)	162, 284
Aor13HI	TCCGGA	1 cut(s)	487
ApeKI	GCWGC	3 cut(s)	29, 269, 593
ApoI	RAATTY	4 cut(s)	22, 181, 454, 655
AseI	ATTAAT	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	167, 545
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	16, 256, 580
BccI	CCATC	4 cut(s)	83, 113, 212, 428
BisI	GCNGC	3 cut(s)	30, 270, 594
BlsI	GCNGC	3 cut(s)	31, 271, 595
BmcAI	AGTACT	1 cut(s)	553
BmsI	GCATC	1 cut(s)	688
Bpu10I	CCTNAGC	2 cut(s)	33, 702
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse3DI	GCAATG	4 cut(s)	222, 414, 522, 714
BseAI	TCCGGA	1 cut(s)	487
BseGI	GGATG	2 cut(s)	73, 499
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	4 cut(s)	222, 414, 522, 714
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	16, 256, 580
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	361, 366
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	361, 366
Bsp13I	TCCGGA	1 cut(s)	487
Bsp1407I	TGTACA	1 cut(s)	335
Bsp143I	GATC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	25
BspEI	TCCGGA	1 cut(s)	487
BsrDI	GCAATG	4 cut(s)	222, 414, 522, 714
BsrGI	TGTACA	1 cut(s)	335
BssMI	GATC	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	231, 609
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	33, 702
BstF5I	GGATG	2 cut(s)	73, 499
BstKTI	GATC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 599
BstNSI	RCATGY	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	16, 256, 580
BtgZI	GCGATG	1 cut(s)	711
BtsCI	GGATG	2 cut(s)	73, 499
BtsIMutI	CAGTG	1 cut(s)	614
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	336, 552
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	5 cut(s)	64, 388, 416, 510, 649
CviJI	RGCY	6 cut(s)	7, 29, 162, 190, 284, 602
CviKI_1	RGCY	6 cut(s)	7, 29, 162, 190, 284, 602
CviQI	GTAC	2 cut(s)	336, 552
DdeI	CTNAG	2 cut(s)	33, 702
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	582
EcoRV	GATATC	1 cut(s)	620
FaeI	CATG	5 cut(s)	67, 391, 419, 513, 652
FaqI	GGGAC	2 cut(s)	361, 366
FatI	CATG	5 cut(s)	63, 387, 415, 509, 648
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	30, 270, 594
FokI	GGATG	2 cut(s)	80, 506
Fsp4HI	GCNGC	3 cut(s)	30, 270, 594
GluI	GCNGC	3 cut(s)	30, 270, 594
HapII	CCGG	1 cut(s)	488
HgaI	GACGC	1 cut(s)	374
Hin1II	CATG	5 cut(s)	67, 391, 419, 513, 652
HinfI	GANTC	2 cut(s)	212, 689
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	2 cut(s)	167, 545
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	420
HpyCH4III	ACNGT	2 cut(s)	231, 609
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	4 cut(s)	227, 402, 415, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 599
HpyF3I	CTNAG	2 cut(s)	33, 702
HpySE526I	ACGT	1 cut(s)	673
Hsp92II	CATG	5 cut(s)	67, 391, 419, 513, 652
Kpn2I	TCCGGA	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	293
LmnI	GCTCC	2 cut(s)	167, 715
LpnPI	CCDG	3 cut(s)	246, 501, 678
Lsp1109I	GCAGC	3 cut(s)	16, 256, 580
LweI	GCATC	1 cut(s)	688
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	3 cut(s)	301, 371, 533
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	5 cut(s)	50, 68, 98, 128, 143
MluCI	AATT	9 cut(s)	22, 46, 76, 106, 181, 454, 472, 655, 683
MmeI	TCCRAC	3 cut(s)	178, 547, 693
MnlI	CCTC	5 cut(s)	28, 313, 387, 484, 608
MroI	TCCGGA	1 cut(s)	487
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	3 cut(s)	147, 170, 474
MspI	CCGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	2 cut(s)	329, 599
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	5 cut(s)	67, 391, 419, 513, 652
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	212, 689
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	31, 271, 595
PshBI	ATTAAT	1 cut(s)	168
PsiI	TTATAA	3 cut(s)	51, 81, 111
RsaI	GTAC	2 cut(s)	337, 553
RsaNI	GTAC	2 cut(s)	336, 552
RseI	CAYNNNNRTG	3 cut(s)	147, 170, 474
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	3 cut(s)	30, 270, 594
Sau3AI	GATC	1 cut(s)	293
ScaI	AGTACT	1 cut(s)	553
SetI	ASST	4 cut(s)	164, 286, 303, 676
SfaNI	GCATC	1 cut(s)	688
SmiMI	CAYNNNNRTG	3 cut(s)	147, 170, 474
Sse9I	AATT	9 cut(s)	22, 46, 76, 106, 181, 454, 472, 655, 683
SspI	AATATT	1 cut(s)	547
TaaI	ACNGT	2 cut(s)	231, 609
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	2 cut(s)	292, 318
TasI	AATT	9 cut(s)	22, 46, 76, 106, 181, 454, 472, 655, 683
TatI	WGTACW	2 cut(s)	335, 551
TfiI	GAWTC	2 cut(s)	212, 689
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	614
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	3 cut(s)	29, 269, 593
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	7 cut(s)	69, 99, 110, 129, 188, 404, 492
TspRI	CASTG	1 cut(s)	614
Van91I	CCANNNNNTGG	1 cut(s)	197
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	4 cut(s)	22, 181, 454, 655
XceI	RCATGY	1 cut(s)	419
ZrmI	AGTACT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.