Rh5BG325800

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011608
Physical Location & Seq
Forward (+)
44487280 .. 44505188
17909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG325800.1

Sequence Viewer

Length: 1476 bp
ATGGTAGTGGAGCTCTATTCTCTATCGGTTGGTGAAAGAGAGTATATATTGGCGTTGATCCAGAACATCTTTTTGGGAACAAGCAGAGCATCTCACTGCTTCCAAGTAAGATTTAGAGTGGAAGTTAGTTTGTTCTGTTTGGTTCAACTCCGAAAAGAAAATAATCAGATTACCTTTACACTTTTGGAAGTTCAGTTCAATTCTGAGATACACTTTCGTGGAGATCATCAGATCGTGGAGATCATCAGATCCATAATCCATAAACTGGTGCCATATCCTGTACGTGCTGCTTTCGACTACGTGATGCTTGGGCCTTACAAGCTGCTTACGTTATTTGTGGTCTTTTATAGCGGAATATTCGCAGCAGCAAAACTTTCAATTGGCTTTCCATTTGTAATTGCAATACTAATATACAAATGGCGAAGGAGGCACTTGTCAATGTATGACAATATTGAAGACTTTCTGCAGAGTAACAATAATCTCATGCCAGTAAGGTACTCTTACTCGGAAATCAAAAAGATGGCTAGCGGATTCAAGGACAAATTGGGTGAAGGAGGCTTTGGCACCGTGTACAAGGCAAAGCTCCGCAGTGGTCGCTTTGTGGCCATCAAGATGTTGAGTAAGTCCAAAACTAATGGGCAAGATTTTATCAATGAGGTTGCAACAATCGGAAGGATTCACCATCTTAACGTGGTGCGACTTATTGGCTTCTGTGTTGACCGTTCAAACCGTGCACTTGTTTATGATTTCATGTCAAATGGCTCTCTTGACAAGTACATTTTCTCTCAGCAAGTCTCCATCTTTTCTCTTCACTGGGTTCGAAAGCAGCGGTGGTTTTCAAAGACAACAAAGGCAACTGATCTAAATATTCAGGTGTTCATGGGGCTGGAAATAGACATAAATTTGGCTGCTAAGGAAGATGATAATTATAATGAAGATGACATGGATGATGATAATTATTATGAAGATGGTATGAATGACGATAATTATAATGAAGATGGTGTAGGAGAAGAATTTGGTCATAGTAATGGTGGTGAAAGCTCCATTAATATGAAAAAAAATTCAGAGCCATATGTTGGAATGGAATTTAATTCTGATGGCATTGCACAGTCATTTTATTTAGAGTATGCCAAGATGACAGGGTTTGCTGCTTCAAAAATAGCTTGTCGTCGGTCAAAGGTAACTAAAGAATGGGTCGAGGCAAAGTATGCTTGTACAAGATTTGGGTCAAAGCGAAAAACTGACGCTCGTAACCCCCGTCCCTGCATGAAAATAGACTGCAAGGCAATGTTGCATGTCAAAAGAAGGCAAGATGGGAAATGGGTTGTTCAAAATTTTGTGAAAGAGCATAATCATGAACTTTCTCCGGAGGATGTCCACTACTTTCCATGTTATAGAAACATTGCTTCTGGTGACTTGAACAATATTAGTACTTTGCATTCAGTTGGAGTGAAACCAAGGAATACGCTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

491

Amino Acids

56.6

Weight (kDa)

8.76

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 178 - 265 2.1e-17 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 179 - 263 2.2e-15 Protein kinase domain
FAR1 PF03101 371 - 455 1.2e-24 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 930, 990
AccB1I GGYRCC 2 cut(s) 268, 563
AccB7I CCANNNNNTGG 2 cut(s) 265, 1076
AccIII TCCGGA 1 cut(s) 1366
AciI CCGC 4 cut(s) 351, 528, 586, 829
AclWI GGATC 2 cut(s) 52, 243
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 5 cut(s) 901, 1013, 1060, 1085, 1333
AfaI GTAC 6 cut(s) 282, 497, 572, 776, 1216, 1432
AfiI CCNNNNNNNGG 2 cut(s) 265, 1076
AjuI GAANNNNNNNTTGG 4 cut(s) 56, 88, 543, 575
AleI CACNNNNGTG 1 cut(s) 216
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 5 cut(s) 13, 322, 583, 1041, 1163
AluI AGCT 5 cut(s) 13, 322, 583, 1041, 1163
Alw21I GWGCWC 2 cut(s) 15, 736
Alw26I GTCTC 1 cut(s) 799
Alw44I GTGCAC 1 cut(s) 732
AlwI GGATC 2 cut(s) 52, 243
Aor13HI TCCGGA 1 cut(s) 1366
AoxI GGCC 2 cut(s) 311, 603
ApaLI GTGCAC 1 cut(s) 732
ApeKI GCWGC 7 cut(s) 287, 322, 362, 365, 826, 908, 1148
ApoI RAATTY 5 cut(s) 901, 1013, 1060, 1085, 1333
AseI ATTAAT 1 cut(s) 1047
Asp700I GAANNNNTTC 1 cut(s) 459
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 5 cut(s) 44, 560, 671, 1046, 1424
AsuII TTCGAA 1 cut(s) 820
AsuNHI GCTAGC 1 cut(s) 524
BaeGI GKGCMC 1 cut(s) 736
BalI TGGCCA 1 cut(s) 605
BanI GGYRCC 2 cut(s) 268, 563
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 15, 736
BbvI GCAGC 7 cut(s) 274, 309, 374, 377, 838, 895, 1135
BccI CCATC 8 cut(s) 514, 614, 690, 806, 962, 992, 1091, 1307
BcoDI GTCTC 1 cut(s) 799
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 464
BisI GCNGC 7 cut(s) 288, 323, 363, 366, 827, 909, 1149
BlsI GCNGC 7 cut(s) 289, 324, 364, 367, 828, 910, 1150
BmcAI AGTACT 1 cut(s) 1432
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 2 cut(s) 270, 565
BmrI ACTGGG 1 cut(s) 823
BmsI GCATC 2 cut(s) 98, 294
BmtI GCTAGC 1 cut(s) 528
BmuI ACTGGG 1 cut(s) 823
BpiI GAAGAC 1 cut(s) 462
Bpu10I CCTNAGC 1 cut(s) 912
Bpu14I TTCGAA 1 cut(s) 820
BsaAI YACGTR 2 cut(s) 284, 301
BsaJI CCNNGG 1 cut(s) 1457
BsaWI WCCGGW 1 cut(s) 1366
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 1076
Bse1I ACTGG 3 cut(s) 270, 488, 818
Bse3DI GCAATG 3 cut(s) 1101, 1293, 1401
BseAI TCCGGA 1 cut(s) 1366
BseDI CCNNGG 1 cut(s) 1457
BseGI GGATG 2 cut(s) 952, 1378
BseLI CCNNNNNNNGG 2 cut(s) 265, 1076
BseMI GCAATG 3 cut(s) 1101, 1293, 1401
BseMII CTCAG 2 cut(s) 195, 800
BseNI ACTGG 3 cut(s) 270, 488, 818
BseSI GKGCMC 1 cut(s) 736
BseXI GCAGC 7 cut(s) 274, 309, 374, 377, 838, 895, 1135
BshFI GGCC 2 cut(s) 313, 605
BshNI GGYRCC 2 cut(s) 268, 563
BsiHKAI GWGCWC 2 cut(s) 15, 736
BsiSI CCGG 1 cut(s) 1367
BslFI GGGAC 1 cut(s) 1245
BslI CCNNNNNNNGG 2 cut(s) 265, 1076
BsmAI GTCTC 1 cut(s) 799
BsmFI GGGAC 1 cut(s) 1245
BsmI GAATGC 1 cut(s) 1438
BsnI GGCC 2 cut(s) 313, 605
Bsp119I TTCGAA 1 cut(s) 820
Bsp1286I GDGCHC 2 cut(s) 15, 736
Bsp13I TCCGGA 1 cut(s) 1366
Bsp1407I TGTACA 2 cut(s) 570, 1214
Bsp143I GATC 6 cut(s) 57, 223, 231, 240, 248, 859
BspACI CCGC 4 cut(s) 351, 528, 586, 829
BspANI GGCC 2 cut(s) 313, 605
BspCNI CTCAG 2 cut(s) 196, 799
BspEI TCCGGA 1 cut(s) 1366
BspHI TCATGA 1 cut(s) 1354
BspLI GGNNCC 2 cut(s) 270, 565
BspMAI CTGCAG 1 cut(s) 468
BspOI GCTAGC 1 cut(s) 528
BspPI GGATC 2 cut(s) 52, 243
BspT104I TTCGAA 1 cut(s) 820
BspT107I GGYRCC 2 cut(s) 268, 563
BsrDI GCAATG 3 cut(s) 1101, 1293, 1401
BsrGI TGTACA 2 cut(s) 570, 1214
BsrI ACTGG 3 cut(s) 270, 488, 818
BssECI CCNNGG 1 cut(s) 1457
BssMI GATC 6 cut(s) 57, 223, 231, 240, 248, 859
BssT1I CCWWGG 1 cut(s) 1457
Bst4CI ACNGT 4 cut(s) 568, 722, 731, 1110
Bst6I CTCTTC 1 cut(s) 813
BstAPI GCANNNNNTGC 1 cut(s) 1208
BstAUI TGTACA 2 cut(s) 570, 1214
BstBAI YACGTR 2 cut(s) 284, 301
BstBI TTCGAA 1 cut(s) 820
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 3 cut(s) 204, 786, 912
BstF5I GGATG 2 cut(s) 952, 1378
BstKTI GATC 6 cut(s) 60, 226, 234, 243, 251, 862
BstMAI GTCTC 1 cut(s) 799
BstMBI GATC 6 cut(s) 57, 223, 231, 240, 248, 859
BstMWI GCNNNNNNNGC 4 cut(s) 319, 427, 594, 1208
BstNSI RCATGY 1 cut(s) 1298
BstSFI CTRYAG 1 cut(s) 464
BstSLI GKGCMC 1 cut(s) 736
BstV1I GCAGC 7 cut(s) 274, 309, 374, 377, 838, 895, 1135
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 2 cut(s) 313, 605
BtsCI GGATG 2 cut(s) 952, 1378
BtsI GCAGTG 2 cut(s) 94, 595
BtsIMutI CAGTG 3 cut(s) 94, 595, 811
Cac8I GCNNGC 1 cut(s) 526
CciI TCATGA 1 cut(s) 1354
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 1253
Csp6I GTAC 6 cut(s) 281, 496, 571, 775, 1215, 1431
CviAII CATG 8 cut(s) 484, 751, 880, 943, 1267, 1295, 1355, 1389
CviQI GTAC 6 cut(s) 281, 496, 571, 775, 1215, 1431
DdeI CTNAG 3 cut(s) 204, 786, 912
DpnI GATC 6 cut(s) 59, 225, 233, 242, 250, 861
DpnII GATC 6 cut(s) 57, 223, 231, 240, 248, 859
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 1457
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
EcoICRI GAGCTC 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 1457
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 1457
FaeI CATG 8 cut(s) 487, 754, 883, 946, 1270, 1298, 1358, 1392
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FaqI GGGAC 1 cut(s) 1245
FatI CATG 8 cut(s) 483, 750, 879, 942, 1266, 1294, 1354, 1388
FauNDI CATATG 1 cut(s) 1072
Fnu4HI GCNGC 7 cut(s) 288, 323, 363, 366, 827, 909, 1149
FokI GGATG 2 cut(s) 959, 1385
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 7 cut(s) 288, 323, 363, 366, 827, 909, 1149
FspBI CTAG 1 cut(s) 525
GluI GCNGC 7 cut(s) 288, 323, 363, 366, 827, 909, 1149
HaeIII GGCC 2 cut(s) 313, 605
HapII CCGG 1 cut(s) 1367
HgaI GACGC 1 cut(s) 1253
Hin1II CATG 8 cut(s) 487, 754, 883, 946, 1270, 1298, 1358, 1392
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HinfI GANTC 2 cut(s) 531, 676
HpaII CCGG 1 cut(s) 1367
HphI GGTGA 5 cut(s) 44, 560, 671, 1046, 1424
Hpy166II GTNNAC 4 cut(s) 571, 718, 734, 1378
Hpy188I TCNGA 9 cut(s) 152, 168, 205, 231, 248, 508, 671, 1066, 1096
Hpy188III TCNNGA 5 cut(s) 61, 610, 767, 1355, 1367
Hpy8I GTNNAC 4 cut(s) 571, 718, 734, 1378
Hpy99I CGWCG 1 cut(s) 1173
HpyAV CCTTC 4 cut(s) 417, 545, 666, 1299
HpyCH4III ACNGT 4 cut(s) 568, 722, 731, 1110
HpyCH4IV ACGT 4 cut(s) 283, 300, 329, 690
HpyCH4V TGCA 9 cut(s) 401, 466, 662, 734, 1106, 1266, 1281, 1294, 1438
HpyF10VI GCNNNNNNNGC 4 cut(s) 319, 427, 594, 1208
HpyF3I CTNAG 3 cut(s) 204, 786, 912
HpySE526I ACGT 4 cut(s) 283, 300, 329, 690
Hsp92II CATG 8 cut(s) 487, 754, 883, 946, 1270, 1298, 1358, 1392
Kpn2I TCCGGA 1 cut(s) 1366
Kzo9I GATC 6 cut(s) 57, 223, 231, 240, 248, 859
LmnI GCTCC 3 cut(s) 10, 588, 1046
Lsp1109I GCAGC 7 cut(s) 274, 309, 374, 377, 838, 895, 1135
LweI GCATC 2 cut(s) 98, 294
MaeI CTAG 1 cut(s) 525
MaeII ACGT 4 cut(s) 283, 300, 329, 690
MaeIII GTNAC 4 cut(s) 470, 1180, 1250, 1412
MalI GATC 6 cut(s) 59, 225, 233, 242, 250, 861
MboI GATC 6 cut(s) 57, 223, 231, 240, 248, 859
MboII GAAGA 7 cut(s) 467, 800, 929, 947, 977, 1007, 1022
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 2 cut(s) 15, 736
MlsI TGGCCA 1 cut(s) 605
MluNI TGGCCA 1 cut(s) 605
MmeI TCCRAC 2 cut(s) 1057, 1426
MnlI CCTC 5 cut(s) 420, 548, 649, 1192, 1363
Mox20I TGGCCA 1 cut(s) 605
MroI TCCGGA 1 cut(s) 1366
MroXI GAANNNNTTC 1 cut(s) 459
MscI TGGCCA 1 cut(s) 605
MseI TTAA 3 cut(s) 687, 1047, 1089
MslI CAYNNNNRTG 5 cut(s) 216, 611, 1026, 1049, 1353
Msp20I TGGCCA 1 cut(s) 605
MspA1I CMGCKG 1 cut(s) 829
MspI CCGG 1 cut(s) 1367
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 1438
MwoI GCNNNNNNNGC 4 cut(s) 319, 427, 594, 1208
NdeI CATATG 1 cut(s) 1072
NdeII GATC 6 cut(s) 57, 223, 231, 240, 248, 859
NheI GCTAGC 1 cut(s) 524
NlaIII CATG 8 cut(s) 487, 754, 883, 946, 1270, 1298, 1358, 1392
NlaIV GGNNCC 2 cut(s) 270, 565
NmuCI GTSAC 1 cut(s) 1412
NspI RCATGY 1 cut(s) 1298
NspV TTCGAA 1 cut(s) 820
OliI CACNNNNGTG 1 cut(s) 216
PagI TCATGA 1 cut(s) 1354
PcsI WCGNNNNNNNCGW 1 cut(s) 1255
PctI GAATGC 1 cut(s) 1438
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 2 cut(s) 531, 676
PflMI CCANNNNNTGG 2 cut(s) 265, 1076
PkrI GCNGC 7 cut(s) 289, 324, 364, 367, 828, 910, 1150
Ppu21I YACGTR 2 cut(s) 284, 301
PshBI ATTAAT 1 cut(s) 1047
PsiI TTATAA 2 cut(s) 930, 990
Psp124BI GAGCTC 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 270, 565
PspPI GGNCC 1 cut(s) 311
PstI CTGCAG 1 cut(s) 468
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 6 cut(s) 282, 497, 572, 776, 1216, 1432
RsaNI GTAC 6 cut(s) 281, 496, 571, 775, 1215, 1431
RseI CAYNNNNRTG 5 cut(s) 216, 611, 1026, 1049, 1353
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 3 cut(s) 687, 1047, 1089
SatI GCNGC 7 cut(s) 288, 323, 363, 366, 827, 909, 1149
Sau3AI GATC 6 cut(s) 57, 223, 231, 240, 248, 859
Sau96I GGNCC 1 cut(s) 311
ScaI AGTACT 1 cut(s) 1432
SduI GDGCHC 2 cut(s) 15, 736
SfaNI GCATC 2 cut(s) 98, 294
SfcI CTRYAG 1 cut(s) 464
SfuI TTCGAA 1 cut(s) 820
SmiMI CAYNNNNRTG 5 cut(s) 216, 611, 1026, 1049, 1353
SsiI CCGC 4 cut(s) 351, 528, 586, 829
SspI AATATT 4 cut(s) 357, 451, 868, 1426
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 15
StyI CCWWGG 1 cut(s) 1457
TaaI ACNGT 4 cut(s) 568, 722, 731, 1110
TaiI ACGT 4 cut(s) 286, 303, 332, 693
TaqI TCGA 3 cut(s) 294, 820, 1197
TaqII GACCGA 1 cut(s) 1161
TatI WGTACW 4 cut(s) 570, 774, 1214, 1430
TfiI GAWTC 2 cut(s) 531, 676
Tru1I TTAA 3 cut(s) 687, 1047, 1089
Tru9I TTAA 3 cut(s) 687, 1047, 1089
TscAI CASTG 3 cut(s) 101, 595, 818
TseFI GTSAC 1 cut(s) 1412
TseI GCWGC 7 cut(s) 287, 322, 362, 365, 826, 908, 1148
Tsp45I GTSAC 1 cut(s) 1412
TspDTI ATGAA 9 cut(s) 739, 868, 948, 978, 989, 1008, 1067, 1283, 1371
TspRI CASTG 3 cut(s) 101, 595, 818
Van91I CCANNNNNTGG 2 cut(s) 265, 1076
VneI GTGCAC 1 cut(s) 732
VspI ATTAAT 1 cut(s) 1047
XapI RAATTY 5 cut(s) 901, 1013, 1060, 1085, 1333
XceI RCATGY 1 cut(s) 1298
XmnI GAANNNNTTC 1 cut(s) 459
XspI CTAG 1 cut(s) 525
ZrmI AGTACT 1 cut(s) 1432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.