transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G27660 |
| fragaria_vesca | FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 |
| malus_domestica | MD08G1026300.v1.1 MD15G1023100.v1.1 |
| prunus_persica | Prupe.1G375000_v2.0.a1 Prupe.1G375000_v2.0.a1 |
| pyrus_communis | pycom08g02040 |
| rosa_chinensis | RchiOBHm_Chr6g0301601 |
| rosa_laevigata | RLG00000011240 |
| rosa_multiflora | Rmu_ssc0000452.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00166620 |
| rosa_rugosa | Rorug06G0306800 Rorug06G0306900 Rorug06G0307000 Rorug06G0307100 Rorug06G0307100 |
| rosa_samantha | Rh6AG420000 Rh6BG426100 Rh6CG433000 Rh6DG419400 |
| rosa_wichuraiana | Rw6G036310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1302 |
| AccB1I | GGYRCC | 1 cut(s) | 1057 |
| AccI | GTMKAC | 1 cut(s) | 689 |
| AccII | CGCG | 4 cut(s) | 970, 982, 1234, 1305 |
| AciI | CCGC | 7 cut(s) | 342, 599, 623, 1208, 1303, 1305, 1314 |
| AclI | AACGTT | 2 cut(s) | 657, 1329 |
| AclWI | GGATC | 3 cut(s) | 170, 183, 741 |
| AcoI | YGGCCR | 1 cut(s) | 1334 |
| AcsI | RAATTY | 4 cut(s) | 163, 510, 639, 1115 |
| AcuI | CTGAAG | 1 cut(s) | 616 |
| AcyI | GRCGYC | 1 cut(s) | 1299 |
| AdeI | CACNNNGTG | 1 cut(s) | 1145 |
| AfaI | GTAC | 6 cut(s) | 484, 763, 787, 850, 1089, 1154 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 206 |
| AgsI | TTSAA | 5 cut(s) | 168, 670, 857, 1046, 1124 |
| AhlI | ACTAGT | 1 cut(s) | 233 |
| AjnI | CCWGG | 1 cut(s) | 1128 |
| Alw21I | GWGCWC | 2 cut(s) | 282, 704 |
| Alw26I | GTCTC | 3 cut(s) | 907, 1130, 1223 |
| AlwI | GGATC | 3 cut(s) | 170, 183, 741 |
| Ama87I | CYCGRG | 1 cut(s) | 697 |
| AoxI | GGCC | 2 cut(s) | 726, 1334 |
| ApeKI | GCWGC | 5 cut(s) | 74, 344, 950, 953, 1037 |
| ApoI | RAATTY | 4 cut(s) | 163, 510, 639, 1115 |
| AspLEI | GCGC | 2 cut(s) | 958, 984 |
| AspS9I | GGNCC | 1 cut(s) | 120 |
| AsuC2I | CCSGG | 1 cut(s) | 918 |
| AsuHPI | GGTGA | 3 cut(s) | 507, 524, 1307 |
| AvaI | CYCGRG | 1 cut(s) | 697 |
| AvaII | GGWCC | 1 cut(s) | 120 |
| BaeGI | GKGCMC | 1 cut(s) | 630 |
| BalI | TGGCCA | 1 cut(s) | 1336 |
| BamHI | GGATCC | 1 cut(s) | 175 |
| BanI | GGYRCC | 1 cut(s) | 1057 |
| BanII | GRGCYC | 3 cut(s) | 282, 704, 1257 |
| BauI | CACGAG | 1 cut(s) | 1262 |
| BbsI | GAAGAC | 3 cut(s) | 54, 453, 675 |
| Bbv12I | GWGCWC | 2 cut(s) | 282, 704 |
| BbvI | GCAGC | 5 cut(s) | 86, 331, 940, 962, 1049 |
| BccI | CCATC | 5 cut(s) | 27, 94, 526, 543, 764 |
| BceAI | ACGGC | 1 cut(s) | 332 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 346, 380 |
| BciT130I | CCWGG | 1 cut(s) | 1130 |
| BciVI | GTATCC | 1 cut(s) | 1100 |
| BclI | TGATCA | 2 cut(s) | 238, 553 |
| BcnI | CCSGG | 1 cut(s) | 918 |
| BcoDI | GTCTC | 3 cut(s) | 907, 1130, 1223 |
| BcuI | ACTAGT | 1 cut(s) | 233 |
| BfaI | CTAG | 4 cut(s) | 234, 354, 525, 705 |
| BfuI | GTATCC | 1 cut(s) | 1100 |
| BglII | AGATCT | 2 cut(s) | 617, 1237 |
| BisI | GCNGC | 6 cut(s) | 75, 345, 599, 951, 954, 1038 |
| BlsI | GCNGC | 6 cut(s) | 76, 346, 600, 952, 955, 1039 |
| BmcAI | AGTACT | 3 cut(s) | 484, 763, 787 |
| Bme1390I | CCNGG | 2 cut(s) | 918, 1130 |
| Bme18I | GGWCC | 1 cut(s) | 120 |
| BmeT110I | CYCGRG | 1 cut(s) | 697 |
| BmgT120I | GGNCC | 1 cut(s) | 120 |
| BmiI | GGNNCC | 5 cut(s) | 106, 122, 177, 198, 1059 |
| BmrFI | CCNGG | 2 cut(s) | 918, 1130 |
| BmsI | GCATC | 7 cut(s) | 40, 372, 458, 597, 852, 874, 1091 |
| BpiI | GAAGAC | 3 cut(s) | 54, 453, 675 |
| BpuEI | CTTGAG | 2 cut(s) | 434, 930 |
| BpuMI | CCSGG | 1 cut(s) | 918 |
| BsaBI | GATNNNNATC | 2 cut(s) | 534, 558 |
| BsaHI | GRCGYC | 1 cut(s) | 1299 |
| BsaI | GGTCTC | 1 cut(s) | 907 |
| BsaJI | CCNNGG | 3 cut(s) | 192, 729, 1303 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 206 |
| Bse1I | ACTGG | 3 cut(s) | 221, 769, 1297 |
| Bse8I | GATNNNNATC | 2 cut(s) | 534, 558 |
| BseBI | CCWGG | 1 cut(s) | 1130 |
| BseDI | CCNNGG | 3 cut(s) | 192, 729, 1303 |
| BseGI | GGATG | 3 cut(s) | 290, 473, 1082 |
| BseJI | GATNNNNATC | 2 cut(s) | 534, 558 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 206 |
| BseMII | CTCAG | 3 cut(s) | 445, 803, 1255 |
| BseNI | ACTGG | 3 cut(s) | 221, 769, 1297 |
| BseRI | GAGGAG | 1 cut(s) | 486 |
| BseSI | GKGCMC | 1 cut(s) | 630 |
| BseXI | GCAGC | 5 cut(s) | 86, 331, 940, 962, 1049 |
| Bsh1236I | CGCG | 4 cut(s) | 970, 982, 1234, 1305 |
| Bsh1285I | CGRYCG | 1 cut(s) | 677 |
| BshFI | GGCC | 2 cut(s) | 728, 1336 |
| BshNI | GGYRCC | 1 cut(s) | 1057 |
| BsiEI | CGRYCG | 1 cut(s) | 677 |
| BsiHKAI | GWGCWC | 2 cut(s) | 282, 704 |
| BsiHKCI | CYCGRG | 1 cut(s) | 697 |
| BsiSI | CCGG | 1 cut(s) | 918 |
| BslFI | GGGAC | 1 cut(s) | 1133 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 206 |
| BsmAI | GTCTC | 3 cut(s) | 907, 1130, 1223 |
| BsmBI | CGTCTC | 1 cut(s) | 1223 |
| BsmFI | GGGAC | 1 cut(s) | 1133 |
| BsnI | GGCC | 2 cut(s) | 728, 1336 |
| Bso31I | GGTCTC | 1 cut(s) | 907 |
| BsoBI | CYCGRG | 1 cut(s) | 697 |
| Bsp1286I | GDGCHC | 4 cut(s) | 282, 630, 704, 1257 |
| Bsp19I | CCATGG | 2 cut(s) | 192, 729 |
| Bsp68I | TCGCGA | 1 cut(s) | 970 |
| BspACI | CCGC | 7 cut(s) | 342, 599, 623, 1208, 1303, 1305, 1314 |
| BspANI | GGCC | 2 cut(s) | 728, 1336 |
| BspCNI | CTCAG | 3 cut(s) | 444, 802, 1254 |
| BspFNI | CGCG | 4 cut(s) | 970, 982, 1234, 1305 |
| BspHI | TCATGA | 1 cut(s) | 420 |
| BspLI | GGNNCC | 5 cut(s) | 106, 122, 177, 198, 1059 |
| BspPI | GGATC | 3 cut(s) | 170, 183, 741 |
| BspQI | GCTCTTC | 2 cut(s) | 270, 1047 |
| BspT107I | GGYRCC | 1 cut(s) | 1057 |
| BspTNI | GGTCTC | 1 cut(s) | 907 |
| BsrI | ACTGG | 3 cut(s) | 221, 769, 1297 |
| BssECI | CCNNGG | 3 cut(s) | 192, 729, 1303 |
| BssNI | GRCGYC | 1 cut(s) | 1299 |
| BssSI | CACGAG | 1 cut(s) | 1262 |
| BssT1I | CCWWGG | 2 cut(s) | 192, 729 |
| Bst2BI | CACGAG | 1 cut(s) | 1262 |
| Bst2UI | CCWGG | 1 cut(s) | 1130 |
| Bst4CI | ACNGT | 2 cut(s) | 188, 311 |
| Bst6I | CTCTTC | 3 cut(s) | 270, 905, 1047 |
| BstACI | GRCGYC | 1 cut(s) | 1299 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 990 |
| BstC8I | GCNNGC | 3 cut(s) | 114, 603, 726 |
| BstDEI | CTNAG | 5 cut(s) | 431, 739, 789, 1142, 1241 |
| BstDSI | CCRYGG | 3 cut(s) | 192, 729, 1303 |
| BstF5I | GGATG | 3 cut(s) | 290, 473, 1082 |
| BstFNI | CGCG | 4 cut(s) | 970, 982, 1234, 1305 |
| BstHHI | GCGC | 2 cut(s) | 958, 984 |
| BstMAI | GTCTC | 3 cut(s) | 907, 1130, 1223 |
| BstMCI | CGRYCG | 1 cut(s) | 677 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 37, 607, 947, 990, 1311 |
| BstNI | CCWGG | 1 cut(s) | 1130 |
| BstNSI | RCATGY | 2 cut(s) | 116, 1282 |
| BstSCI | CCNGG | 2 cut(s) | 916, 1128 |
| BstSLI | GKGCMC | 1 cut(s) | 630 |
| BstUI | CGCG | 4 cut(s) | 970, 982, 1234, 1305 |
| BstV1I | GCAGC | 5 cut(s) | 86, 331, 940, 962, 1049 |
| BstV2I | GAAGAC | 3 cut(s) | 54, 453, 675 |
| BstX2I | RGATCY | 4 cut(s) | 175, 617, 733, 1237 |
| BstYI | RGATCY | 4 cut(s) | 175, 617, 733, 1237 |
| BsuI | GTATCC | 1 cut(s) | 1100 |
| BsuRI | GGCC | 2 cut(s) | 728, 1336 |
| BtgI | CCRYGG | 3 cut(s) | 192, 729, 1303 |
| BtgZI | GCGATG | 3 cut(s) | 5, 620, 783 |
| BtsCI | GGATG | 3 cut(s) | 290, 473, 1082 |
| BtsIMutI | CAGTG | 2 cut(s) | 214, 439 |
| BtuMI | TCGCGA | 1 cut(s) | 970 |
| Cac8I | GCNNGC | 3 cut(s) | 114, 603, 726 |
| CciI | TCATGA | 1 cut(s) | 420 |
| CfoI | GCGC | 2 cut(s) | 958, 984 |
| Cfr13I | GGNCC | 1 cut(s) | 120 |
| Cfr42I | CCGCGG | 1 cut(s) | 1306 |
| CseI | GACGC | 1 cut(s) | 1240 |
| CsiI | ACCWGGT | 1 cut(s) | 1128 |
| Csp6I | GTAC | 6 cut(s) | 483, 762, 786, 849, 1088, 1153 |
| CviQI | GTAC | 6 cut(s) | 483, 762, 786, 849, 1088, 1153 |
| DdeI | CTNAG | 5 cut(s) | 431, 739, 789, 1142, 1241 |
| DraIII | CACNNNGTG | 1 cut(s) | 1145 |
| EaeI | YGGCCR | 1 cut(s) | 1334 |
| Eam1104I | CTCTTC | 3 cut(s) | 270, 905, 1047 |
| EarI | CTCTTC | 3 cut(s) | 270, 905, 1047 |
| EciI | GGCGGA | 1 cut(s) | 1223 |
| Ecl136II | GAGCTC | 2 cut(s) | 280, 702 |
| Eco130I | CCWWGG | 2 cut(s) | 192, 729 |
| Eco24I | GRGCYC | 3 cut(s) | 282, 704, 1257 |
| Eco31I | GGTCTC | 1 cut(s) | 907 |
| Eco47I | GGWCC | 1 cut(s) | 120 |
| Eco53kI | GAGCTC | 2 cut(s) | 280, 702 |
| Eco57I | CTGAAG | 1 cut(s) | 616 |
| Eco88I | CYCGRG | 1 cut(s) | 697 |
| EcoICRI | GAGCTC | 2 cut(s) | 280, 702 |
| EcoRII | CCWGG | 1 cut(s) | 1128 |
| EcoT14I | CCWWGG | 2 cut(s) | 192, 729 |
| EcoT22I | ATGCAT | 1 cut(s) | 867 |
| EcoT38I | GRGCYC | 3 cut(s) | 282, 704, 1257 |
| ErhI | CCWWGG | 2 cut(s) | 192, 729 |
| Esp3I | CGTCTC | 1 cut(s) | 1223 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 36, 68 |
| FaqI | GGGAC | 1 cut(s) | 1133 |
| FauI | CCCGC | 1 cut(s) | 616 |
| FbaI | TGATCA | 2 cut(s) | 238, 553 |
| FblI | GTMKAC | 1 cut(s) | 689 |
| Fnu4HI | GCNGC | 6 cut(s) | 75, 345, 599, 951, 954, 1038 |
| FokI | GGATG | 3 cut(s) | 277, 480, 1069 |
| FriOI | GRGCYC | 3 cut(s) | 282, 704, 1257 |
| Fsp4HI | GCNGC | 6 cut(s) | 75, 345, 599, 951, 954, 1038 |
| FspBI | CTAG | 4 cut(s) | 234, 354, 525, 705 |
| GlaI | GCGC | 2 cut(s) | 957, 983 |
| GluI | GCNGC | 6 cut(s) | 75, 345, 599, 951, 954, 1038 |
| HaeIII | GGCC | 2 cut(s) | 728, 1336 |
| HapII | CCGG | 1 cut(s) | 918 |
| HgaI | GACGC | 1 cut(s) | 1240 |
| HhaI | GCGC | 2 cut(s) | 958, 984 |
| Hin1I | GRCGYC | 1 cut(s) | 1299 |
| Hin6I | GCGC | 2 cut(s) | 956, 982 |
| HinP1I | GCGC | 2 cut(s) | 956, 982 |
| HindIII | AAGCTT | 1 cut(s) | 169 |
| HinfI | GANTC | 5 cut(s) | 5, 49, 800, 977, 1032 |
| HpaII | CCGG | 1 cut(s) | 918 |
| HphI | GGTGA | 3 cut(s) | 507, 524, 1307 |
| Hpy166II | GTNNAC | 1 cut(s) | 690 |
| Hpy188I | TCNGA | 3 cut(s) | 648, 1106, 1244 |
| Hpy188III | TCNNGA | 8 cut(s) | 200, 421, 451, 465, 697, 854, 969, 1135 |
| Hpy8I | GTNNAC | 1 cut(s) | 690 |
| HpyAV | CCTTC | 3 cut(s) | 325, 1006, 1130 |
| HpyCH4III | ACNGT | 2 cut(s) | 188, 311 |
| HpyCH4IV | ACGT | 4 cut(s) | 657, 1299, 1329, 1361 |
| HpyCH4V | TGCA | 6 cut(s) | 11, 98, 724, 752, 865, 1278 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 37, 607, 947, 990, 1311 |
| HpyF3I | CTNAG | 5 cut(s) | 431, 739, 789, 1142, 1241 |
| HpySE526I | ACGT | 4 cut(s) | 657, 1299, 1329, 1361 |
| Hsp92I | GRCGYC | 1 cut(s) | 1299 |
| HspAI | GCGC | 2 cut(s) | 956, 982 |
| Ksp22I | TGATCA | 2 cut(s) | 238, 553 |
| KspI | CCGCGG | 1 cut(s) | 1306 |
| LguI | GCTCTTC | 2 cut(s) | 270, 1047 |
| LmnI | GCTCC | 2 cut(s) | 45, 499 |
| Lsp1109I | GCAGC | 5 cut(s) | 86, 331, 940, 962, 1049 |
| LweI | GCATC | 7 cut(s) | 40, 372, 458, 597, 852, 874, 1091 |
| MabI | ACCWGGT | 1 cut(s) | 1128 |
| MaeI | CTAG | 4 cut(s) | 234, 354, 525, 705 |
| MaeII | ACGT | 4 cut(s) | 657, 1299, 1329, 1361 |
| MaeIII | GTNAC | 3 cut(s) | 149, 1288, 1295 |
| MboII | GAAGA | 7 cut(s) | 54, 57, 287, 453, 675, 922, 1034 |
| MfeI | CAATTG | 1 cut(s) | 1049 |
| MflI | RGATCY | 4 cut(s) | 175, 617, 733, 1237 |
| MhlI | GDGCHC | 4 cut(s) | 282, 630, 704, 1257 |
| MlsI | TGGCCA | 1 cut(s) | 1336 |
| MluCI | AATT | 9 cut(s) | 163, 323, 386, 510, 539, 639, 1019, 1049, 1115 |
| MluNI | TGGCCA | 1 cut(s) | 1336 |
| MlyI | GAGTC | 2 cut(s) | 14, 986 |
| MmeI | TCCRAC | 2 cut(s) | 82, 687 |
| Mox20I | TGGCCA | 1 cut(s) | 1336 |
| Mph1103I | ATGCAT | 1 cut(s) | 867 |
| MscI | TGGCCA | 1 cut(s) | 1336 |
| MseI | TTAA | 4 cut(s) | 270, 326, 489, 1002 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1273 |
| Msp20I | TGGCCA | 1 cut(s) | 1336 |
| MspA1I | CMGCKG | 3 cut(s) | 344, 953, 1305 |
| MspI | CCGG | 1 cut(s) | 918 |
| MspR9I | CCNGG | 2 cut(s) | 918, 1130 |
| MunI | CAATTG | 1 cut(s) | 1049 |
| MvaI | CCWGG | 1 cut(s) | 1130 |
| MvnI | CGCG | 4 cut(s) | 970, 982, 1234, 1305 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 37, 607, 947, 990, 1311 |
| NciI | CCSGG | 1 cut(s) | 918 |
| NcoI | CCATGG | 2 cut(s) | 192, 729 |
| NlaIV | GGNNCC | 5 cut(s) | 106, 122, 177, 198, 1059 |
| NmuCI | GTSAC | 2 cut(s) | 1288, 1295 |
| NruI | TCGCGA | 1 cut(s) | 970 |
| NsiI | ATGCAT | 1 cut(s) | 867 |
| NspI | RCATGY | 2 cut(s) | 116, 1282 |
| PaeI | GCATGC | 1 cut(s) | 116 |
| PaeR7I | CTCGAG | 1 cut(s) | 697 |
| PagI | TCATGA | 1 cut(s) | 420 |
| PciSI | GCTCTTC | 2 cut(s) | 270, 1047 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 683 |
| PfeI | GAWTC | 3 cut(s) | 49, 800, 1032 |
| PflFI | GACNNNGTC | 1 cut(s) | 457 |
| PkrI | GCNGC | 6 cut(s) | 76, 346, 600, 952, 955, 1039 |
| Ple19I | CGATCG | 1 cut(s) | 677 |
| PleI | GAGTC | 2 cut(s) | 13, 985 |
| PpsI | GAGTC | 2 cut(s) | 13, 985 |
| Psp124BI | GAGCTC | 2 cut(s) | 282, 704 |
| Psp1406I | AACGTT | 2 cut(s) | 657, 1329 |
| Psp6I | CCWGG | 1 cut(s) | 1128 |
| PspGI | CCWGG | 1 cut(s) | 1128 |
| PspN4I | GGNNCC | 5 cut(s) | 106, 122, 177, 198, 1059 |
| PspPI | GGNCC | 1 cut(s) | 120 |
| PsuI | RGATCY | 4 cut(s) | 175, 617, 733, 1237 |
| PsyI | GACNNNGTC | 1 cut(s) | 457 |
| PvuI | CGATCG | 1 cut(s) | 677 |
| PvuII | CAGCTG | 1 cut(s) | 953 |
| RruI | TCGCGA | 1 cut(s) | 970 |
| RsaI | GTAC | 6 cut(s) | 484, 763, 787, 850, 1089, 1154 |
| RsaNI | GTAC | 6 cut(s) | 483, 762, 786, 849, 1088, 1153 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1273 |
| SacI | GAGCTC | 2 cut(s) | 282, 704 |
| SacII | CCGCGG | 1 cut(s) | 1306 |
| SapI | GCTCTTC | 2 cut(s) | 270, 1047 |
| SaqAI | TTAA | 4 cut(s) | 270, 326, 489, 1002 |
| SatI | GCNGC | 6 cut(s) | 75, 345, 599, 951, 954, 1038 |
| Sau96I | GGNCC | 1 cut(s) | 120 |
| ScaI | AGTACT | 3 cut(s) | 484, 763, 787 |
| SchI | GAGTC | 2 cut(s) | 14, 986 |
| ScrFI | CCNGG | 2 cut(s) | 918, 1130 |
| SduI | GDGCHC | 4 cut(s) | 282, 630, 704, 1257 |
| SexAI | ACCWGGT | 1 cut(s) | 1128 |
| SfaNI | GCATC | 7 cut(s) | 40, 372, 458, 597, 852, 874, 1091 |
| Sfr274I | CTCGAG | 1 cut(s) | 697 |
| Sfr303I | CCGCGG | 1 cut(s) | 1306 |
| SgrBI | CCGCGG | 1 cut(s) | 1306 |
| SinI | GGWCC | 1 cut(s) | 120 |
| SlaI | CTCGAG | 1 cut(s) | 697 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1273 |
| SmlI | CTYRAG | 3 cut(s) | 449, 697, 945 |
| SmoI | CTYRAG | 3 cut(s) | 449, 697, 945 |
| SpeI | ACTAGT | 1 cut(s) | 233 |
| SphI | GCATGC | 1 cut(s) | 116 |
| Sse9I | AATT | 9 cut(s) | 163, 323, 386, 510, 539, 639, 1019, 1049, 1115 |
| SsiI | CCGC | 7 cut(s) | 342, 599, 623, 1208, 1303, 1305, 1314 |
| SspI | AATATT | 4 cut(s) | 229, 268, 380, 1191 |
| SspMI | CTAG | 4 cut(s) | 234, 354, 525, 705 |
| SstI | GAGCTC | 2 cut(s) | 282, 704 |
| StyD4I | CCNGG | 2 cut(s) | 916, 1128 |
| StyI | CCWWGG | 2 cut(s) | 192, 729 |
| TaaI | ACNGT | 2 cut(s) | 188, 311 |
| TaiI | ACGT | 4 cut(s) | 660, 1302, 1332, 1364 |
| TaqI | TCGA | 5 cut(s) | 300, 366, 698, 888, 1134 |
| TasI | AATT | 9 cut(s) | 163, 323, 386, 510, 539, 639, 1019, 1049, 1115 |
| TatI | WGTACW | 3 cut(s) | 482, 761, 785 |
| TauI | GCSGC | 1 cut(s) | 601 |
| TfiI | GAWTC | 3 cut(s) | 49, 800, 1032 |
| Tru1I | TTAA | 4 cut(s) | 270, 326, 489, 1002 |
| Tru9I | TTAA | 4 cut(s) | 270, 326, 489, 1002 |
| TscAI | CASTG | 2 cut(s) | 221, 439 |
| TseFI | GTSAC | 2 cut(s) | 1288, 1295 |
| TseI | GCWGC | 5 cut(s) | 74, 344, 950, 953, 1037 |
| Tsp45I | GTSAC | 2 cut(s) | 1288, 1295 |
| TspDTI | ATGAA | 7 cut(s) | 407, 437, 491, 731, 909, 978, 1172 |
| TspGWI | ACGGA | 1 cut(s) | 1075 |
| TspRI | CASTG | 2 cut(s) | 221, 439 |
| Tth111I | GACNNNGTC | 1 cut(s) | 457 |
| VpaK11BI | GGWCC | 1 cut(s) | 120 |
| XapI | RAATTY | 4 cut(s) | 163, 510, 639, 1115 |
| XceI | RCATGY | 2 cut(s) | 116, 1282 |
| XhoI | CTCGAG | 1 cut(s) | 697 |
| XmiI | GTMKAC | 1 cut(s) | 689 |
| XspI | CTAG | 4 cut(s) | 234, 354, 525, 705 |
| ZraI | GACGTC | 1 cut(s) | 1300 |
| ZrmI | AGTACT | 3 cut(s) | 484, 763, 787 |
| Zsp2I | ATGCAT | 1 cut(s) | 867 |