Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Reverse (-)

3441285 .. 3443409

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCCAGAGCAGCTACAGAAAGGTCTCTCTATGATTTCACTGTCAAGGTATGTTGATGGTAAGGATGTTCCTCTTAGCAAGTTCAAGGGGAAGGTTCTTTTGGTTGTCAATGTTGCTTCAAGATGTGGCTTGACTTCTTCAAATTACTCAGAACTGTCACACTTGTATGAGAAGTACAAACCTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTTGGGGGCCAAGAACCCGGATCAAATGGGGAAATCAAGCAGTTTGCTTGTACAAGGTTTAAAGCCGAATTCCCGATTTTTGACAAGGTTGATGTCAACGGTCCCAGCACAGCTCCAGTTTACCAGTTTCTGAAATCAAGTGCAGGAGGTTTTCTAGGTGACATTATCAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGAAAAGTTGTTGAGAGATACCCACCAACAACATCCCCTTTTCAAATTGAGAAGGATATCCAGAAACTGGTCGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

168

Amino Acids

18.6

Weight (kDa)

8.9

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	17 - 118	2.6e-40	Glutathione peroxidase
Redoxin	PF08534	17 - 69	1.5e-06	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	490
AclWI	GGATC	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	287, 394
AfaI	GTAC	2 cut(s)	176, 271
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	4 cut(s)	85, 120, 141, 467
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	13, 203, 332, 500
AluI	AGCT	4 cut(s)	13, 203, 332, 500
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	247
AlwNI	CAGNNNCTG	2 cut(s)	349, 490
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	2 cut(s)	10, 497
ApoI	RAATTY	2 cut(s)	287, 394
AspS9I	GGNCC	2 cut(s)	226, 320
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	2 cut(s)	200, 374
BfmI	CTRYAG	1 cut(s)	14
BisI	GCNGC	2 cut(s)	11, 498
BlsI	GCNGC	2 cut(s)	12, 499
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	226, 320
BmiI	GGNNCC	2 cut(s)	227, 322
BmrFI	CCNGG	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse1I	ACTGG	3 cut(s)	335, 343, 495
BseGI	GGATG	2 cut(s)	70, 455
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	3 cut(s)	335, 343, 495
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	228
Bso31I	GGTCTC	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	227, 322
BspPI	GGATC	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	269
BsrI	ACTGG	3 cut(s)	335, 343, 495
BssMI	GATC	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	42, 156, 320
BstAUI	TGTACA	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	74, 148
BstF5I	GGATG	2 cut(s)	70, 455
BstKTI	GATC	1 cut(s)	242
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	70, 455
BtsIMutI	CAGTG	1 cut(s)	38
CaiI	CAGNNNCTG	2 cut(s)	349, 490
Cfr13I	GGNCC	2 cut(s)	226, 320
Csp6I	GTAC	2 cut(s)	175, 270
CviJI	RGCY	7 cut(s)	13, 129, 203, 228, 284, 332, 500
CviKI_1	RGCY	7 cut(s)	13, 129, 203, 228, 284, 332, 500
CviQI	GTAC	2 cut(s)	175, 270
DdeI	CTNAG	2 cut(s)	74, 148
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
DraI	TTTAAA	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	481
FaiI	YATR	3 cut(s)	32, 51, 168
FaqI	GGGAC	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	11, 498
FokI	GGATG	2 cut(s)	77, 442
Fsp4HI	GCNGC	2 cut(s)	11, 498
FspBI	CTAG	2 cut(s)	200, 374
GluI	GCNGC	2 cut(s)	11, 498
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	3 cut(s)	316, 340, 415
Hpy188I	TCNGA	2 cut(s)	151, 351
Hpy188III	TCNNGA	3 cut(s)	120, 292, 484
Hpy8I	GTNNAC	3 cut(s)	316, 340, 415
HpyAV	CCTTC	2 cut(s)	85, 469
HpyCH4III	ACNGT	3 cut(s)	42, 156, 320
HpyCH4V	TGCA	2 cut(s)	213, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	74, 148
Kzo9I	GATC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	8 cut(s)	18, 250, 337, 348, 348, 356, 476, 497
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	2 cut(s)	200, 374
MaeIII	GTNAC	2 cut(s)	156, 377
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	1 cut(s)	129
MluCI	AATT	4 cut(s)	142, 287, 394, 468
MnlI	CCTC	3 cut(s)	81, 192, 359
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	239
NlaIV	GGNNCC	2 cut(s)	227, 322
NmuCI	GTSAC	2 cut(s)	156, 377
PfeI	GAWTC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	12, 499
PspFI	CCCAGC	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	227, 322
PspPI	GGNCC	2 cut(s)	226, 320
PstNI	CAGNNNCTG	2 cut(s)	349, 490
RsaI	GTAC	2 cut(s)	176, 271
RsaNI	GTAC	2 cut(s)	175, 270
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	11, 498
Sau3AI	GATC	1 cut(s)	239
Sau96I	GGNCC	2 cut(s)	226, 320
ScrFI	CCNGG	1 cut(s)	237
SfcI	CTRYAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	4 cut(s)	142, 287, 394, 468
SspMI	CTAG	2 cut(s)	200, 374
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	3 cut(s)	42, 156, 320
TasI	AATT	4 cut(s)	142, 287, 394, 468
TatI	WGTACW	2 cut(s)	174, 269
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	156, 377
TseI	GCWGC	2 cut(s)	10, 497
Tsp45I	GTSAC	2 cut(s)	156, 377
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	2 cut(s)	287, 394
XspI	CTAG	2 cut(s)	200, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.