Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007597

Physical Location & Seq

Genomic Coordinates Forward (+)

3528541 .. 3529901

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAATTATCGAGACAAAATTGAAAAAGTTCCAAGGGATTGGTGGGTTGAAGACATATGTGAGTTGGATATTGATCGCTACAAGCGAGTTATGATTGCTGTGAAATCGAAGGGAAGAATGGATGGCACTGTTATTGGGGAGGCTCTGAAGACTTATGCAGTTAGATGGTTGCCAGATTCTGTTGATGCACTGGTTTCAGACGAACACGCCTTGAGGAACAAATCTCTGGTAAAAACAATTATTTGCTTATTGCCGTCTGACAAAGGTATGGGTTGTTCATCAAGTTTCTTGCTGAAACTTTTGAAAGTTTCTATTTTGGTTGGAGCAGACGAGTCGTTGAGGGAGGAGCTGGTGAAGAGGATCAGTTTGAAGTTGCATGAAGCTTGTGTCGGTGACTTGTTGATCCCCGCTCGATCTCCTCAGATTACTATATATGATGTTGAGTTGGTTCAGTCTGTTGTGAGTCAGTATGTGATGCATGAAAAGTGTAAGTGGGATTTGGATTTTGTCGAGAAGAATGAAAAGGGGACTGATACTTTTACGTTGTTGAGTGTTGGTAGACTGGTTGATAGGTATCTTGCGGAAATTGCACATGACCCAAACCTTAACCTCAGTAGTTTCGTAGAGTTGTCCCAATCAATTCCCGAATCAGCACGGCCAATTCAGGATGGGCTGTACAAAGCCATCGACATCTACCTGAAGGAGCACCCTAGTTTAACAAAGGCTGAAAGGAAAAGAATATGCGGATTGATGGATGTCAAGAAACTTACAGTGGAGGCATCCATGGATGCTGCACAGAACGAGAAGCTCCCACTCCGAGTCGTTGTTCAAGTTCTCTTCTTTGAGCAGGTAAGATCTGCAGCTAGCGTTCGAGCCCTTAACAACCATCCTAGTGACACTTCACTTTCCACGACAAATATGGACGAAGAACGTGACAAGACAGCAGAAGAAAACTGCAAGCCTCTGGGAAAACAGATGAGCCAAATGAAGGTAACCGAAGAGTTCCAGAAGAACATGAAACTTGGCAAGAAGAGCAGCAAAAACAGCGCAAGTGGTTCGCAGTTGCTGCCATCTAGGTCCAGGAGAATCTTTGACAAATTGTGGTCTGTGGGGAAGGGGCATGTAGAGAACAAGAGCTCGGAGACATCCGGGAGTTCTCATAGTCCAACTTCAAATGTTCCTGGCGATTCAAAGTCGGTTTCAAGACACCGGAGGCATTCTATCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005886 GO:0006810 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009911 GO:0009914 GO:0009926 GO:0010154 GO:0010229 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045176 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0090567 GO:0097708 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

410

Amino Acids

45.97

Weight (kDa)

8.76

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	13 - 261	2.5e-84	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31820 AT4G31820
fragaria_vesca	FvH4_2g41130 FvH4_2g41130 FvH4_2g41130 FvH4_2g41130
malus_domestica	MD08G1057100.v1.1 MD15G1040500.v1.1 MD15G1040600.v1.1
prunus_persica	Prupe.1G393800_v2.0.a1
pyrus_communis	pycom08g04650 pycom08g04660 pycom15g03780
rosa_chinensis	RchiOBHm_Chr5g0077711 RchiOBHm_Chr6g0299411
rosa_laevigata	RLG00000011434
rosa_multiflora	Rmu_co8314217.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168710
rosa_rugosa	Rorug06G0288000
rosa_samantha	Rh6AG399800 Rh6BG408200 Rh6CG413900 Rh6DG400900
rosa_wichuraiana	Rw6G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	838
AccBSI	CCGCTC	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	559
AciI	CCGC	3 cut(s)	408, 581, 744
AclWI	GGATC	2 cut(s)	368, 397
AcoI	YGGCCR	1 cut(s)	656
AcuI	CTGAAG	2 cut(s)	167, 719
AfaI	GTAC	1 cut(s)	677
AfiI	CCNNNNNNNGG	1 cut(s)	988
AgsI	TTSAA	8 cut(s)	23, 50, 304, 370, 830, 1173, 1191, 1203
AjnI	CCWGG	2 cut(s)	1079, 1180
AluBI	AGCT	5 cut(s)	349, 383, 808, 863, 1137
AluI	AGCT	5 cut(s)	349, 383, 808, 863, 1137
Alw21I	GWGCWC	2 cut(s)	708, 1139
Alw26I	GTCTC	2 cut(s)	6, 1136
AlwI	GGATC	2 cut(s)	368, 397
AlwNI	CAGNNNCTG	2 cut(s)	179, 1066
AoxI	GGCC	1 cut(s)	656
ApeKI	GCWGC	4 cut(s)	791, 860, 1035, 1066
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	1049
AspS9I	GGNCC	1 cut(s)	1077
AsuC2I	CCSGG	1 cut(s)	1150
AsuHPI	GGTGA	2 cut(s)	364, 404
AsuNHI	GCTAGC	1 cut(s)	863
AvaII	GGWCC	1 cut(s)	1077
BanII	GRGCYC	2 cut(s)	877, 1139
BbsI	GAAGAC	2 cut(s)	57, 155
Bbv12I	GWGCWC	2 cut(s)	708, 1139
BbvI	GCAGC	4 cut(s)	778, 872, 1047, 1053
BccI	CCATC	7 cut(s)	116, 159, 662, 692, 745, 894, 1078
BceAI	ACGGC	2 cut(s)	238, 671
BcgI	CGANNNNNNTGC	4 cut(s)	315, 349, 1038, 1072
BciT130I	CCWGG	2 cut(s)	1081, 1182
BcnI	CCSGG	1 cut(s)	1150
BcoDI	GTCTC	2 cut(s)	6, 1136
BfaI	CTAG	4 cut(s)	711, 864, 891, 1074
BfmI	CTRYAG	1 cut(s)	858
BfuAI	ACCTGC	1 cut(s)	838
BglII	AGATCT	1 cut(s)	854
BisI	GCNGC	4 cut(s)	792, 861, 1036, 1067
BlsI	GCNGC	4 cut(s)	793, 862, 1037, 1068
Bme1390I	CCNGG	3 cut(s)	1081, 1150, 1182
Bme18I	GGWCC	1 cut(s)	1077
BmgT120I	GGNCC	1 cut(s)	1077
BmrFI	CCNGG	3 cut(s)	1081, 1150, 1182
BmsI	GCATC	4 cut(s)	175, 465, 778, 788
BmtI	GCTAGC	1 cut(s)	867
BpiI	GAAGAC	2 cut(s)	57, 155
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	1150
BsaBI	GATNNNNATC	2 cut(s)	72, 573
BsaJI	CCNNGG	2 cut(s)	32, 783
BsaWI	WCCGGW	1 cut(s)	1209
Bsc4I	CCNNNNNNNGG	1 cut(s)	988
Bse1I	ACTGG	2 cut(s)	195, 567
Bse8I	GATNNNNATC	2 cut(s)	72, 573
BseBI	CCWGG	2 cut(s)	1081, 1182
BseDI	CCNNGG	2 cut(s)	32, 783
BseGI	GGATG	7 cut(s)	127, 673, 760, 779, 793, 886, 1145
BseJI	GATNNNNATC	2 cut(s)	72, 573
BseLI	CCNNNNNNNGG	1 cut(s)	988
BseMII	CTCAG	2 cut(s)	434, 625
BseNI	ACTGG	2 cut(s)	195, 567
BseRI	GAGGAG	2 cut(s)	359, 408
BseXI	GCAGC	4 cut(s)	778, 872, 1047, 1053
BsgI	GTGCAG	1 cut(s)	777
BshFI	GGCC	1 cut(s)	658
BsiHKAI	GWGCWC	2 cut(s)	708, 1139
BsiSI	CCGG	2 cut(s)	1149, 1210
BslFI	GGGAC	2 cut(s)	541, 616
BslI	CCNNNNNNNGG	1 cut(s)	988
BsmAI	GTCTC	2 cut(s)	6, 1136
BsmFI	GGGAC	2 cut(s)	541, 616
BsmI	GAATGC	1 cut(s)	1216
BsnI	GGCC	1 cut(s)	658
Bsp1286I	GDGCHC	3 cut(s)	708, 877, 1139
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	5 cut(s)	73, 360, 402, 413, 854
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	3 cut(s)	408, 581, 744
BspANI	GGCC	1 cut(s)	658
BspCNI	CTCAG	2 cut(s)	433, 624
BspMAI	CTGCAG	1 cut(s)	862
BspMI	ACCTGC	1 cut(s)	838
BspOI	GCTAGC	1 cut(s)	867
BspPI	GGATC	2 cut(s)	368, 397
BspQI	GCTCTTC	1 cut(s)	1025
BsrBI	CCGCTC	1 cut(s)	410
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	2 cut(s)	195, 567
BssECI	CCNNGG	2 cut(s)	32, 783
BssMI	GATC	5 cut(s)	73, 360, 402, 413, 854
BssT1I	CCWWGG	2 cut(s)	32, 783
Bst2UI	CCWGG	2 cut(s)	1081, 1182
Bst4CI	ACNGT	2 cut(s)	130, 772
Bst6I	CTCTTC	4 cut(s)	350, 842, 993, 1025
BstAPI	GCANNNNNTGC	1 cut(s)	1066
BstAUI	TGTACA	1 cut(s)	675
BstC8I	GCNNGC	2 cut(s)	865, 959
BstDEI	CTNAG	2 cut(s)	420, 611
BstDSI	CCRYGG	1 cut(s)	783
BstEII	GGTNACC	1 cut(s)	991
BstF5I	GGATG	7 cut(s)	127, 673, 760, 779, 793, 886, 1145
BstHHI	GCGC	1 cut(s)	1049
BstKTI	GATC	5 cut(s)	76, 363, 405, 416, 857
BstMAI	GTCTC	2 cut(s)	6, 1136
BstMBI	GATC	5 cut(s)	73, 360, 402, 413, 854
BstMWI	GCNNNNNNNGC	4 cut(s)	587, 1032, 1044, 1066
BstNI	CCWGG	2 cut(s)	1081, 1182
BstNSI	RCATGY	1 cut(s)	1124
BstPI	GGTNACC	1 cut(s)	991
BstSCI	CCNGG	3 cut(s)	1079, 1148, 1180
BstSFI	CTRYAG	1 cut(s)	858
BstV1I	GCAGC	4 cut(s)	778, 872, 1047, 1053
BstV2I	GAAGAC	2 cut(s)	57, 155
BstX2I	RGATCY	1 cut(s)	854
BstXI	CCANNNNNNTGG	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	854
BsuRI	GGCC	1 cut(s)	658
BtgI	CCRYGG	1 cut(s)	783
BtsCI	GGATG	7 cut(s)	127, 673, 760, 779, 793, 886, 1145
BtsIMutI	CAGTG	3 cut(s)	126, 188, 777
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	2 cut(s)	865, 959
CaiI	CAGNNNCTG	2 cut(s)	179, 1066
CfoI	GCGC	1 cut(s)	1049
Cfr13I	GGNCC	1 cut(s)	1077
Csp6I	GTAC	1 cut(s)	676
CviAII	CATG	6 cut(s)	377, 479, 593, 784, 1015, 1121
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	2 cut(s)	420, 611
DpnI	GATC	5 cut(s)	75, 362, 404, 415, 856
DpnII	GATC	5 cut(s)	73, 360, 402, 413, 854
EaeI	YGGCCR	1 cut(s)	656
Eam1104I	CTCTTC	4 cut(s)	350, 842, 993, 1025
EarI	CTCTTC	4 cut(s)	350, 842, 993, 1025
Ecl136II	GAGCTC	1 cut(s)	1137
Eco130I	CCWWGG	2 cut(s)	32, 783
Eco24I	GRGCYC	2 cut(s)	877, 1139
Eco47I	GGWCC	1 cut(s)	1077
Eco53kI	GAGCTC	1 cut(s)	1137
Eco57I	CTGAAG	2 cut(s)	167, 719
Eco91I	GGTNACC	1 cut(s)	991
EcoICRI	GAGCTC	1 cut(s)	1137
EcoO65I	GGTNACC	1 cut(s)	991
EcoRII	CCWGG	2 cut(s)	1079, 1180
EcoT14I	CCWWGG	2 cut(s)	32, 783
EcoT22I	ATGCAT	1 cut(s)	480
EcoT38I	GRGCYC	2 cut(s)	877, 1139
ErhI	CCWWGG	2 cut(s)	32, 783
FaeI	CATG	6 cut(s)	380, 482, 596, 787, 1018, 1124
FaqI	GGGAC	2 cut(s)	541, 616
FatI	CATG	6 cut(s)	376, 478, 592, 783, 1014, 1120
FauI	CCCGC	1 cut(s)	415
FauNDI	CATATG	1 cut(s)	56
FblI	GTMKAC	1 cut(s)	559
Fnu4HI	GCNGC	4 cut(s)	792, 861, 1036, 1067
FokI	GGATG	7 cut(s)	134, 680, 766, 767, 800, 873, 1132
FriOI	GRGCYC	2 cut(s)	877, 1139
Fsp4HI	GCNGC	4 cut(s)	792, 861, 1036, 1067
FspBI	CTAG	4 cut(s)	711, 864, 891, 1074
GlaI	GCGC	1 cut(s)	1048
GluI	GCNGC	4 cut(s)	792, 861, 1036, 1067
HaeIII	GGCC	1 cut(s)	658
HapII	CCGG	2 cut(s)	1149, 1210
HhaI	GCGC	1 cut(s)	1049
Hin1II	CATG	6 cut(s)	380, 482, 596, 787, 1018, 1124
Hin6I	GCGC	1 cut(s)	1047
HinP1I	GCGC	1 cut(s)	1047
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	7 cut(s)	176, 332, 463, 647, 819, 1086, 1187
HpaII	CCGG	2 cut(s)	1149, 1210
HphI	GGTGA	2 cut(s)	364, 404
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	6 cut(s)	147, 199, 259, 423, 818, 1141
Hpy188III	TCNNGA	7 cut(s)	11, 511, 644, 665, 760, 1006, 1203
Hpy8I	GTNNAC	1 cut(s)	560
HpyAV	CCTTC	4 cut(s)	103, 694, 982, 1108
HpyCH4III	ACNGT	2 cut(s)	130, 772
HpyCH4IV	ACGT	2 cut(s)	542, 931
HpyCH4V	TGCA	8 cut(s)	158, 188, 376, 478, 590, 794, 860, 957
HpyF10VI	GCNNNNNNNGC	4 cut(s)	587, 1032, 1044, 1066
HpyF3I	CTNAG	2 cut(s)	420, 611
HpySE526I	ACGT	2 cut(s)	542, 931
Hsp92II	CATG	6 cut(s)	380, 482, 596, 787, 1018, 1124
HspAI	GCGC	1 cut(s)	1047
Kzo9I	GATC	5 cut(s)	73, 360, 402, 413, 854
LguI	GCTCTTC	1 cut(s)	1025
LmnI	GCTCC	4 cut(s)	323, 346, 703, 813
Lsp1109I	GCAGC	4 cut(s)	778, 872, 1047, 1053
LweI	GCATC	4 cut(s)	175, 465, 778, 788
MaeI	CTAG	4 cut(s)	711, 864, 891, 1074
MaeII	ACGT	2 cut(s)	542, 931
MaeIII	GTNAC	4 cut(s)	392, 893, 932, 991
MalI	GATC	5 cut(s)	75, 362, 404, 415, 856
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	5 cut(s)	73, 360, 402, 413, 854
MflI	RGATCY	1 cut(s)	854
MhlI	GDGCHC	3 cut(s)	708, 877, 1139
MluCI	AATT	7 cut(s)	4, 18, 237, 585, 639, 660, 1097
MlyI	GAGTC	3 cut(s)	341, 472, 828
MmeI	TCCRAC	3 cut(s)	45, 301, 1190
Mph1103I	ATGCAT	1 cut(s)	480
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	3 cut(s)	606, 716, 879
MslI	CAYNNNNRTG	1 cut(s)	891
MspI	CCGG	2 cut(s)	1149, 1210
MspR9I	CCNGG	3 cut(s)	1081, 1150, 1182
Mva1269I	GAATGC	1 cut(s)	1216
MvaI	CCWGG	2 cut(s)	1081, 1182
MwoI	GCNNNNNNNGC	4 cut(s)	587, 1032, 1044, 1066
NciI	CCSGG	1 cut(s)	1150
NcoI	CCATGG	1 cut(s)	783
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	5 cut(s)	73, 360, 402, 413, 854
NheI	GCTAGC	1 cut(s)	863
NlaIII	CATG	6 cut(s)	380, 482, 596, 787, 1018, 1124
NmuCI	GTSAC	3 cut(s)	392, 893, 932
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	1 cut(s)	1124
PciSI	GCTCTTC	1 cut(s)	1025
PcsI	WCGNNNNNNNCGW	1 cut(s)	82
PctI	GAATGC	1 cut(s)	1216
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	176, 647, 1086, 1187
PfoI	TCCNGGA	2 cut(s)	1079, 1148
PkrI	GCNGC	4 cut(s)	793, 862, 1037, 1068
PleI	GAGTC	3 cut(s)	340, 471, 827
PpsI	GAGTC	3 cut(s)	340, 471, 827
Psp124BI	GAGCTC	1 cut(s)	1139
Psp6I	CCWGG	2 cut(s)	1079, 1180
PspEI	GGTNACC	1 cut(s)	991
PspGI	CCWGG	2 cut(s)	1079, 1180
PspPI	GGNCC	1 cut(s)	1077
PsrI	GAACNNNNNNTAC	2 cut(s)	259, 291
PstI	CTGCAG	1 cut(s)	862
PstNI	CAGNNNCTG	2 cut(s)	179, 1066
PsuI	RGATCY	1 cut(s)	854
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
RseI	CAYNNNNRTG	1 cut(s)	891
SacI	GAGCTC	1 cut(s)	1139
SapI	GCTCTTC	1 cut(s)	1025
SaqAI	TTAA	3 cut(s)	606, 716, 879
SatI	GCNGC	4 cut(s)	792, 861, 1036, 1067
Sau3AI	GATC	5 cut(s)	73, 360, 402, 413, 854
Sau96I	GGNCC	1 cut(s)	1077
SchI	GAGTC	3 cut(s)	341, 472, 828
ScrFI	CCNGG	3 cut(s)	1081, 1150, 1182
SduI	GDGCHC	3 cut(s)	708, 877, 1139
SfaNI	GCATC	4 cut(s)	175, 465, 778, 788
SfcI	CTRYAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	1077
SmiMI	CAYNNNNRTG	1 cut(s)	891
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	7 cut(s)	4, 18, 237, 585, 639, 660, 1097
SsiI	CCGC	3 cut(s)	408, 581, 744
SspMI	CTAG	4 cut(s)	711, 864, 891, 1074
SstI	GAGCTC	1 cut(s)	1139
StyD4I	CCNGG	3 cut(s)	1079, 1148, 1180
StyI	CCWWGG	2 cut(s)	32, 783
TaaI	ACNGT	2 cut(s)	130, 772
TaiI	ACGT	2 cut(s)	545, 934
TaqI	TCGA	6 cut(s)	10, 107, 412, 510, 687, 871
TasI	AATT	7 cut(s)	4, 18, 237, 585, 639, 660, 1097
TatI	WGTACW	1 cut(s)	675
TfiI	GAWTC	4 cut(s)	176, 647, 1086, 1187
Tru1I	TTAA	3 cut(s)	606, 716, 879
Tru9I	TTAA	3 cut(s)	606, 716, 879
TscAI	CASTG	3 cut(s)	133, 195, 777
TseFI	GTSAC	3 cut(s)	392, 893, 932
TseI	GCWGC	4 cut(s)	791, 860, 1035, 1066
Tsp45I	GTSAC	3 cut(s)	392, 893, 932
TspDTI	ATGAA	7 cut(s)	17, 267, 393, 495, 534, 1001, 1031
TspRI	CASTG	3 cut(s)	133, 195, 777
VpaK11BI	GGWCC	1 cut(s)	1077
XceI	RCATGY	1 cut(s)	1124
XcmI	CCANNNNNNNNNTGG	2 cut(s)	39, 916
XmiI	GTMKAC	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	4 cut(s)	711, 864, 891, 1074
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.