pycom08g05500

phosphatase 2C

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
4215035 .. 4217166
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g05500.2

Sequence Viewer

Length: 1596 bp
ATGGAGGATATGTCTTCGGCGTTTGCGTTGCCATTTAGAGTAGGTAACTCAGTCTGTGATAACCCAACCATAGCTGCCCATATCGATATCACAAGACTTAAGCTAATGAAAAACACGGCGGGGTTTGTATCTGGTTCTGTCACCATGGGTTCCAGTGAGACAGTTGCAGCTGGTGAAGAGGATTGTAATTGTAGTTGCTCAGGTAATGATAATTTCGGAGCAGTTTCTGCACCGAAAGAGGACAAGGGAGGAGGAGCTCCTTTGTTGGATATGATATCTCAAGACAAAAGCAATTGGGTTTCTTCTGCTGATTTGGTAGGCCATGAGAGTGAGGACGATGATTCTTTATCATTGGAAGGCGATCAGGTTTTTGATAGCTTTTGTTCAGTCTCGGTGGCGAGTGAGTCAAGTAGCTTGTGTTTAGAGGACTTCCTCGTCTACGAGATTGGTCCGGATGCAGGCACTCTGAGTTCTGTAGACACGGAGCAGAGCATTTGCTGTGTTGATGTTGTCGATAAGGCTACAGATTTAGGTGATTCAAATTTTGAGACAGAGATCACAAGTGACCCCCTTGCTGTGACGGGGAACCCTGAGGAAGAAATTGGCGATGGGTCTGATCCAAAGCCATCTGCAGTTGTTGATCAATTACCTGTGGAAACAGGGGCCAAAGAAACAGTCAGCCGCAGTGTTTTTGAGGTAGACTATGTGCCACTTTGGGGGTTTACATCCGTGATTGGAAGAAGACCAGAGATGGAAGATGCACTTGCCGCTATACCACAATTTTTGAAGATTCCAATTCAAATGCTGATTGGTGACCGCATACTTGATGGCTTGAGCAAGTGTTTACACCAAACTGTGCATTTCTTTGGAGTCTATGATGGTCATGGAGGCTCTCAGGTTGCAAACTATTGTCGTGATCGCGTTCATTTGGCTTTGGTTGAAGAGATAGAATCTGTTAAGGAAGGCCTAGTTCATGTTGATACTGAGATTGGAGGGAAGGCTGGTCTTGAGCCCATCGCCCCAGAAACCGTTGGTTCCACTGCTGTTGTTGCCCTTATTTGCTCGTCTCATATCATAGTAGCAAACTGTGGAGATTCGAGAGCAGTTCTGTGTCGTGGTAAAGAACCCATGGCGTTGTCAGTGGATCATAAACCAAATCGGGAAGACGAATATGCAAGGATTGAAGCAGCTGGAGGCAAGGTCATACAATGGAATGGCCATCGTGTGTTTGGAGTTCTTGCTATGTCAAGGTCTATAGGCGATAGATATTTAAAACCGTGGATCATTCCAGAACCAGAAGTGATGTTTATTCCCCGAACAAAAGATGACGAATGCCTAATTTTAGCCAGTGATGGTTTATGGGACGTTATGTCAAACGAAGAAGTGTGTGACCTTGCTCGGAGAAGAATACTCCTCTGGCACAAGAAGAATGGCGCAGATGGACTTCCGCAGGAAAGAGGCATAGGAATTGATCCTGCTGCCCAGGCAGCAGCGGAGTTTCTTTCAAACCGTGCCCTTCAAAAAGGAAGTAAGGACAACATTACTGTAATTGTGGTAGATTTGAAAGCTCAAAGGAAGTTTAAAAGCAAAACATGA

Protein Analysis

532

Amino Acids

57.07

Weight (kDa)

4.58

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
AccI GTMKAC 3 cut(s) 438, 477, 699
AccII CGCG 1 cut(s) 921
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 6 cut(s) 119, 682, 768, 817, 1448, 1493
AclWI GGATC 4 cut(s) 611, 1152, 1289, 1466
AcoI YGGCCR 1 cut(s) 1216
AcsI RAATTY 1 cut(s) 541
AfiI CCNNNNNNNGG 2 cut(s) 458, 716
AflII CTTAAG 1 cut(s) 98
AgsI TTSAA 8 cut(s) 540, 787, 800, 941, 1184, 1506, 1520, 1564
AhdI GACNNNNNGTC 1 cut(s) 1369
AjnI CCWGG 1 cut(s) 1482
AluBI AGCT 8 cut(s) 74, 103, 170, 257, 378, 414, 1190, 1568
AluI AGCT 8 cut(s) 74, 103, 170, 257, 378, 414, 1190, 1568
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 4 cut(s) 152, 394, 542, 1071
AlwI GGATC 4 cut(s) 611, 1152, 1289, 1466
AlwNI CAGNNNCTG 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 451
AoxI GGCC 4 cut(s) 319, 663, 964, 1216
ApeKI GCWGC 6 cut(s) 74, 167, 1187, 1478, 1487, 1490
ApoI RAATTY 1 cut(s) 541
ArsI GACNNNNNNTTYG 2 cut(s) 660, 692
AspLEI GCGC 1 cut(s) 1436
AspS9I GGNCC 2 cut(s) 449, 663
AsuHPI GGTGA 4 cut(s) 133, 185, 545, 824
AvaII GGWCC 1 cut(s) 449
AxyI CCTNAGG 1 cut(s) 591
BaeGI GKGCMC 1 cut(s) 1516
BalI TGGCCA 1 cut(s) 1218
BanII GRGCYC 2 cut(s) 259, 1014
BbsI GAAGAC 3 cut(s) 6, 748, 1170
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 6 cut(s) 61, 179, 1199, 1465, 1499, 1502
BccI CCATC 9 cut(s) 602, 634, 745, 821, 872, 1022, 1227, 1346, 1433
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 1484
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 4 cut(s) 152, 394, 542, 1071
BfaI CTAG 1 cut(s) 968
BfmI CTRYAG 4 cut(s) 474, 522, 630, 1254
BfrI CTTAAG 1 cut(s) 98
BisI GCNGC 8 cut(s) 75, 168, 682, 768, 1188, 1479, 1488, 1491
BlsI GCNGC 8 cut(s) 76, 169, 683, 769, 1189, 1480, 1489, 1492
Bme1390I CCNGG 1 cut(s) 1484
Bme18I GGWCC 1 cut(s) 449
BmeRI GACNNNNNGTC 1 cut(s) 1369
BmgT120I GGNCC 2 cut(s) 449, 663
BmiI GGNNCC 4 cut(s) 151, 587, 664, 1036
BmrFI CCNGG 1 cut(s) 1484
BmsI GCATC 2 cut(s) 445, 748
BpiI GAAGAC 3 cut(s) 6, 748, 1170
BpmI CTGGAG 1 cut(s) 1212
Bpu10I CCTNAGC 1 cut(s) 199
BpuEI CTTGAG 3 cut(s) 264, 853, 1028
Bsa29I ATCGAT 1 cut(s) 84
BsaJI CCNNGG 4 cut(s) 144, 1128, 1277, 1482
BsaWI WCCGGW 1 cut(s) 451
BsaXI ACNNNNNCTCC 3 cut(s) 26, 1185, 1215
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 716
Bse1I ACTGG 2 cut(s) 153, 1347
Bse21I CCTNAGG 1 cut(s) 591
BseAI TCCGGA 1 cut(s) 451
BseBI CCWGG 1 cut(s) 1484
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 4 cut(s) 144, 1128, 1277, 1482
BseGI GGATG 2 cut(s) 460, 725
BseLI CCNNNNNNNGG 2 cut(s) 458, 716
BseMII CTCAG 6 cut(s) 63, 213, 458, 582, 908, 975
BseNI ACTGG 2 cut(s) 153, 1347
BseRI GAGGAG 3 cut(s) 264, 267, 1403
BseSI GKGCMC 1 cut(s) 1516
BseXI GCAGC 6 cut(s) 61, 179, 1199, 1465, 1499, 1502
BsgI GTGCAG 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 921
BshFI GGCC 4 cut(s) 321, 665, 966, 1218
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 1376
BslI CCNNNNNNNGG 2 cut(s) 458, 716
BsmAI GTCTC 4 cut(s) 152, 394, 542, 1071
BsmBI CGTCTC 1 cut(s) 1071
BsmFI GGGAC 1 cut(s) 1376
BsmI GAATGC 1 cut(s) 1337
BsnI GGCC 4 cut(s) 321, 665, 966, 1218
Bsp1286I GDGCHC 3 cut(s) 259, 1014, 1516
Bsp13I TCCGGA 1 cut(s) 451
Bsp143I GATC 8 cut(s) 361, 555, 616, 640, 916, 1144, 1281, 1471
Bsp19I CCATGG 2 cut(s) 144, 1128
BspACI CCGC 6 cut(s) 119, 682, 768, 817, 1448, 1493
BspANI GGCC 4 cut(s) 321, 665, 966, 1218
BspCNI CTCAG 6 cut(s) 62, 212, 459, 583, 907, 976
BspDI ATCGAT 1 cut(s) 84
BspEI TCCGGA 1 cut(s) 451
BspFNI CGCG 1 cut(s) 921
BspLI GGNNCC 4 cut(s) 151, 587, 664, 1036
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 4 cut(s) 611, 1152, 1289, 1466
BspTI CTTAAG 1 cut(s) 98
BsrI ACTGG 2 cut(s) 153, 1347
BssECI CCNNGG 4 cut(s) 144, 1128, 1277, 1482
BssMI GATC 8 cut(s) 361, 555, 616, 640, 916, 1144, 1281, 1471
BssT1I CCWWGG 2 cut(s) 144, 1128
Bst2UI CCWGG 1 cut(s) 1484
Bst4CI ACNGT 8 cut(s) 163, 676, 856, 1030, 1088, 1278, 1511, 1546
Bst6I CTCTTC 2 cut(s) 171, 936
BstAFI CTTAAG 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 6 cut(s) 49, 199, 467, 591, 894, 984
BstDSI CCRYGG 3 cut(s) 144, 1128, 1277
BstEII GGTNACC 1 cut(s) 812
BstF5I GGATG 2 cut(s) 460, 725
BstFNI CGCG 1 cut(s) 921
BstHHI GCGC 1 cut(s) 1436
BstKTI GATC 8 cut(s) 364, 558, 619, 643, 919, 1147, 1284, 1474
BstMAI GTCTC 4 cut(s) 152, 394, 542, 1071
BstMBI GATC 8 cut(s) 361, 555, 616, 640, 916, 1144, 1281, 1471
BstMWI GCNNNNNNNGC 5 cut(s) 227, 767, 1049, 1484, 1487
BstNI CCWGG 1 cut(s) 1484
BstPI GGTNACC 1 cut(s) 812
BstSCI CCNGG 1 cut(s) 1482
BstSFI CTRYAG 4 cut(s) 474, 522, 630, 1254
BstSLI GKGCMC 1 cut(s) 1516
BstUI CGCG 1 cut(s) 921
BstV1I GCAGC 6 cut(s) 61, 179, 1199, 1465, 1499, 1502
BstV2I GAAGAC 3 cut(s) 6, 748, 1170
Bsu15I ATCGAT 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 4 cut(s) 321, 665, 966, 1218
BsuTUI ATCGAT 1 cut(s) 84
BtgI CCRYGG 3 cut(s) 144, 1128, 1277
BtgZI GCGATG 2 cut(s) 621, 1000
BtsCI GGATG 2 cut(s) 460, 725
BtsI GCAGTG 2 cut(s) 691, 1038
BtsIMutI CAGTG 5 cut(s) 160, 691, 1038, 1146, 1354
Cac8I GCNNGC 1 cut(s) 460
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 1 cut(s) 1436
Cfr13I GGNCC 2 cut(s) 449, 663
ClaI ATCGAT 1 cut(s) 84
CspCI CAANNNNNGTGG 4 cut(s) 765, 800, 1027, 1062
CviAII CATG 6 cut(s) 145, 323, 884, 974, 1129, 1593
DdeI CTNAG 6 cut(s) 49, 199, 467, 591, 894, 984
DpnI GATC 8 cut(s) 363, 557, 618, 642, 918, 1146, 1283, 1473
DpnII GATC 8 cut(s) 361, 555, 616, 640, 916, 1144, 1281, 1471
DraI TTTAAA 2 cut(s) 1272, 1582
DrdI GACNNNNNNGTC 1 cut(s) 434
DriI GACNNNNNGTC 1 cut(s) 1369
DseDI GACNNNNNNGTC 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 1216
Eam1104I CTCTTC 2 cut(s) 171, 936
Eam1105I GACNNNNNGTC 1 cut(s) 1369
EarI CTCTTC 2 cut(s) 171, 936
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 144, 1128
Eco147I AGGCCT 1 cut(s) 966
Eco24I GRGCYC 2 cut(s) 259, 1014
Eco32I GATATC 2 cut(s) 88, 276
Eco47I GGWCC 1 cut(s) 449
Eco53kI GAGCTC 1 cut(s) 257
Eco81I CCTNAGG 1 cut(s) 591
Eco91I GGTNACC 1 cut(s) 812
EcoICRI GAGCTC 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 812
EcoRII CCWGG 1 cut(s) 1482
EcoRV GATATC 2 cut(s) 88, 276
EcoT14I CCWWGG 2 cut(s) 144, 1128
EcoT38I GRGCYC 2 cut(s) 259, 1014
ErhI CCWWGG 2 cut(s) 144, 1128
Esp3I CGTCTC 1 cut(s) 1071
FaeI CATG 6 cut(s) 148, 326, 887, 977, 1132, 1596
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FaqI GGGAC 1 cut(s) 1376
FatI CATG 6 cut(s) 144, 322, 883, 973, 1128, 1592
FauI CCCGC 1 cut(s) 112
FbaI TGATCA 1 cut(s) 640
FblI GTMKAC 3 cut(s) 438, 477, 699
Fnu4HI GCNGC 8 cut(s) 75, 168, 682, 768, 1188, 1479, 1488, 1491
FokI GGATG 2 cut(s) 467, 712
FriOI GRGCYC 2 cut(s) 259, 1014
Fsp4HI GCNGC 8 cut(s) 75, 168, 682, 768, 1188, 1479, 1488, 1491
FspBI CTAG 1 cut(s) 968
GlaI GCGC 1 cut(s) 1435
GluI GCNGC 8 cut(s) 75, 168, 682, 768, 1188, 1479, 1488, 1491
GsuI CTGGAG 1 cut(s) 1212
HaeIII GGCC 4 cut(s) 321, 665, 966, 1218
HapII CCGG 1 cut(s) 452
HhaI GCGC 1 cut(s) 1436
Hin1II CATG 6 cut(s) 148, 326, 887, 977, 1132, 1596
Hin6I GCGC 1 cut(s) 1434
HinP1I GCGC 1 cut(s) 1434
HinfI GANTC 7 cut(s) 341, 404, 536, 790, 870, 950, 1094
HpaII CCGG 1 cut(s) 452
HphI GGTGA 4 cut(s) 133, 185, 545, 824
Hpy166II GTNNAC 5 cut(s) 439, 478, 700, 723, 845
Hpy188I TCNGA 4 cut(s) 218, 468, 616, 1401
Hpy188III TCNNGA 7 cut(s) 281, 452, 914, 1007, 1098, 1160, 1289
Hpy8I GTNNAC 5 cut(s) 439, 478, 700, 723, 845
HpyAV CCTTC 4 cut(s) 350, 956, 991, 1526
HpyCH4III ACNGT 8 cut(s) 163, 676, 856, 1030, 1088, 1278, 1511, 1546
HpyCH4IV ACGT 1 cut(s) 1365
HpyCH4V TGCA 8 cut(s) 167, 230, 458, 632, 761, 859, 902, 1175
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 767, 1049, 1484, 1487
HpyF3I CTNAG 6 cut(s) 49, 199, 467, 591, 894, 984
HpySE526I ACGT 1 cut(s) 1365
Hsp92II CATG 6 cut(s) 148, 326, 887, 977, 1132, 1596
HspAI GCGC 1 cut(s) 1434
Kpn2I TCCGGA 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 8 cut(s) 361, 555, 616, 640, 916, 1144, 1281, 1471
LmnI GCTCC 4 cut(s) 218, 254, 262, 484
Lsp1109I GCAGC 6 cut(s) 61, 179, 1199, 1465, 1499, 1502
LweI GCATC 2 cut(s) 445, 748
MaeI CTAG 1 cut(s) 968
MaeII ACGT 1 cut(s) 1365
MaeIII GTNAC 6 cut(s) 44, 139, 563, 577, 812, 1388
MalI GATC 8 cut(s) 363, 557, 618, 642, 918, 1146, 1283, 1473
MboI GATC 8 cut(s) 361, 555, 616, 640, 916, 1144, 1281, 1471
MfeI CAATTG 1 cut(s) 292
MhlI GDGCHC 3 cut(s) 259, 1014, 1516
MlsI TGGCCA 1 cut(s) 1218
MluNI TGGCCA 1 cut(s) 1218
MlyI GAGTC 2 cut(s) 413, 879
MmeI TCCRAC 1 cut(s) 246
Mox20I TGGCCA 1 cut(s) 1218
MroI TCCGGA 1 cut(s) 451
MscI TGGCCA 1 cut(s) 1218
MseI TTAA 4 cut(s) 99, 957, 1271, 1581
MslI CAYNNNNRTG 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 1218
MspA1I CMGCKG 3 cut(s) 170, 1190, 1493
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 1484
MunI CAATTG 1 cut(s) 292
Mva1269I GAATGC 1 cut(s) 1337
MvaI CCWGG 1 cut(s) 1484
MvnI CGCG 1 cut(s) 921
MwoI GCNNNNNNNGC 5 cut(s) 227, 767, 1049, 1484, 1487
NcoI CCATGG 2 cut(s) 144, 1128
NdeII GATC 8 cut(s) 361, 555, 616, 640, 916, 1144, 1281, 1471
NlaIII CATG 6 cut(s) 148, 326, 887, 977, 1132, 1596
NlaIV GGNNCC 4 cut(s) 151, 587, 664, 1036
NmuCI GTSAC 5 cut(s) 139, 563, 577, 812, 1388
PceI AGGCCT 1 cut(s) 966
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PctI GAATGC 1 cut(s) 1337
PfeI GAWTC 5 cut(s) 341, 536, 790, 950, 1094
PkrI GCNGC 8 cut(s) 76, 169, 683, 769, 1189, 1480, 1489, 1492
PleI GAGTC 2 cut(s) 412, 878
PpsI GAGTC 2 cut(s) 412, 878
Psp124BI GAGCTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 1482
PspEI GGTNACC 1 cut(s) 812
PspGI CCWGG 1 cut(s) 1482
PspN4I GGNNCC 4 cut(s) 151, 587, 664, 1036
PspPI GGNCC 2 cut(s) 449, 663
PstI CTGCAG 1 cut(s) 634
PstNI CAGNNNCTG 1 cut(s) 227
PvuII CAGCTG 2 cut(s) 170, 1190
RseI CAYNNNNRTG 1 cut(s) 327
SacI GAGCTC 1 cut(s) 259
SaqAI TTAA 4 cut(s) 99, 957, 1271, 1581
SatI GCNGC 8 cut(s) 75, 168, 682, 768, 1188, 1479, 1488, 1491
Sau3AI GATC 8 cut(s) 361, 555, 616, 640, 916, 1144, 1281, 1471
Sau96I GGNCC 2 cut(s) 449, 663
SchI GAGTC 2 cut(s) 413, 879
ScrFI CCNGG 1 cut(s) 1484
SduI GDGCHC 3 cut(s) 259, 1014, 1516
SfaNI GCATC 2 cut(s) 445, 748
SfcI CTRYAG 4 cut(s) 474, 522, 630, 1254
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 4 cut(s) 98, 279, 832, 1007
SmoI CTYRAG 4 cut(s) 98, 279, 832, 1007
SseBI AGGCCT 1 cut(s) 966
SsiI CCGC 6 cut(s) 119, 682, 768, 817, 1448, 1493
SspMI CTAG 1 cut(s) 968
SstI GAGCTC 1 cut(s) 259
StuI AGGCCT 1 cut(s) 966
StyD4I CCNGG 1 cut(s) 1482
StyI CCWWGG 2 cut(s) 144, 1128
TaaI ACNGT 8 cut(s) 163, 676, 856, 1030, 1088, 1278, 1511, 1546
TaiI ACGT 1 cut(s) 1368
TaqI TCGA 3 cut(s) 84, 513, 1097
TauI GCSGC 2 cut(s) 684, 770
TfiI GAWTC 5 cut(s) 341, 536, 790, 950, 1094
Tru1I TTAA 4 cut(s) 99, 957, 1271, 1581
Tru9I TTAA 4 cut(s) 99, 957, 1271, 1581
TscAI CASTG 5 cut(s) 160, 691, 1045, 1146, 1354
TseFI GTSAC 5 cut(s) 139, 563, 577, 812, 1388
TseI GCWGC 6 cut(s) 74, 167, 1187, 1478, 1487, 1490
Tsp45I GTSAC 5 cut(s) 139, 563, 577, 812, 1388
TspDTI ATGAA 3 cut(s) 122, 914, 962
TspGWI ACGGA 2 cut(s) 497, 718
TspRI CASTG 5 cut(s) 160, 691, 1045, 1146, 1354
Vha464I CTTAAG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 1 cut(s) 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 1226
XmiI GTMKAC 3 cut(s) 438, 477, 699
XspI CTAG 1 cut(s) 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.