Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002541

Physical Location & Seq

Genomic Coordinates Reverse (-)

53286734 .. 53286970

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0387900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGGGTGGGCTGGGATTGTGGTGAATGGGTGCGTAAGAGATGTGGATGAGATCAATGAATGTGAGATCGGGGTGAGAGCTTTGGCGACTTGTCCGGTGAGACCGATTAAAGGTGAAGATGGGAGTGGCCAGAAGCATGTTGATGTCAACATTGGAGGAACATGGATTCGTGCTGGGGAATGGTTGTATGCGGATAATGATGGCATCCTCGTCTCCACGACTAAATTGTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

78

Amino Acids

8.34

Weight (kDa)

4.68

Isoelectric Point (pI)

23.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RraA-like	PF03737	2 - 71	4.2e-22	Aldolase/RraA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450
malus_domestica	MD08G1066300.v1.1 MD15G1054500.v1.1
prunus_persica	Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1
pyrus_communis	pycom08g05500 pycom15g05160
rosa_chinensis	RchiOBHm_Chr6g0311361
rosa_laevigata	RLG00000010413
rosa_multiflora	Rmu_sc0008536.1_g000009
rosa_roxburghii	Rroxscaffold_7G00157690
rosa_rugosa	Rorug06G0387800 Rorug06G0387900 Rorug06G0388000 Rorug06G0388100 Rorug06G0388200
rosa_samantha	Rh6AG502500 Rh6BG513200 Rh6CG519000 Rh6DG505200
rosa_wichuraiana	Rw6G043760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	226
AciI	CCGC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	110
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	2 cut(s)	94, 217
AoxI	GGCC	1 cut(s)	127
AsuHPI	GGTGA	4 cut(s)	34, 85, 109, 125
BalI	TGGCCA	1 cut(s)	129
BccI	CCATC	2 cut(s)	113, 194
BcoDI	GTCTC	2 cut(s)	94, 217
BmsI	GCATC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	52, 204
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	11, 173
BshFI	GGCC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	94, 217
BsmBI	CGTCTC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	51, 66
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	94
BssMI	GATC	2 cut(s)	51, 66
BstF5I	GGATG	2 cut(s)	52, 204
BstKTI	GATC	2 cut(s)	54, 69
BstMAI	GTCTC	2 cut(s)	94, 217
BstMBI	GATC	2 cut(s)	51, 66
BstNSI	RCATGY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	52, 204
CviAII	CATG	2 cut(s)	137, 162
CviJI	RGCY	3 cut(s)	11, 80, 129
CviKI_1	RGCY	3 cut(s)	11, 80, 129
DpnI	GATC	2 cut(s)	53, 68
DpnII	GATC	2 cut(s)	51, 66
DrdI	GACNNNNNNGTC	1 cut(s)	226
DseDI	GACNNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	2 cut(s)	140, 165
FaiI	YATR	3 cut(s)	138, 163, 189
FatI	CATG	2 cut(s)	136, 161
FokI	GGATG	2 cut(s)	59, 191
GsaI	CCCAGC	2 cut(s)	15, 177
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	2 cut(s)	140, 165
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	4 cut(s)	34, 85, 109, 125
Hpy166II	GTNNAC	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	140, 165
Kzo9I	GATC	2 cut(s)	51, 66
LpnPI	CCDG	3 cut(s)	108, 143, 159
LweI	GCATC	1 cut(s)	213
MalI	GATC	2 cut(s)	53, 68
MboI	GATC	2 cut(s)	51, 66
MboII	GAAGA	1 cut(s)	128
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	2 cut(s)	224, 231
MluNI	TGGCCA	1 cut(s)	129
MnlI	CCTC	2 cut(s)	149, 218
Mox20I	TGGCCA	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	129
MspI	CCGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	51, 66
NlaIII	CATG	2 cut(s)	140, 165
NspI	RCATGY	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	166
PspFI	CCCAGC	2 cut(s)	11, 173
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	51, 66
SetI	ASST	2 cut(s)	82, 115
SfaNI	GCATC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	224, 231
SsiI	CCGC	1 cut(s)	191
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	2 cut(s)	224, 231
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	72
XceI	RCATGY	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.