Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008536.1

Orthogroup ID

OG0002541

Physical Location & Seq

Genomic Coordinates Forward (+)

57322 .. 59945

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008536.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

atgtcaccggcggtcgcggtgccatttagagtaggtaactcagtctgtgataacccaactatagctacccacatgaatattacaagtcttaagctaatgacagacagtgcggggttgctatctgattctgtcaccaggagttccactgaggcggttgcagctggtaaagaggattgtaattgtagtcattcagggaatgacgttagtgttgttgcagtatcggttgcagaagaggaaaaaggaggaggagatccattgttagatatgatacctcaagacgaaggcgatcgggttgctactggtaacgtgatggctggggaaagtgaggaagatgattgcatatcattggagggtgatcagatacttgatagctcttgttcattctcagtggcgagtgagtcaagtagcttatgtttagaggacttcctggtgtacgagacaacctctgaaggagtaacactgagttctatagacattgacaggaacaattgttttggtgatgttgctaaggtggctgatataggtgattcaaaaattgagacagagatcgctactgatccactttctttgtcagtgagccttggggaagaaactggtcatgggtctgacccaaagccatctgatgttgttgttcaattgcctgtggaagtaggggtcaaagaaacagtcagccgcagtgtttttgaggtagaatatgttccactttgggggtttacatccttgtgtgggagaagaccagagatggaagatgcattagcaactgtacctgagttttcaaagattccaattcaaatgctgataggtgaccgagtactggatggcatgagcaagtgtataaatcagactgttcatttctttggagtctatgatggtcatggaggctctcaggtggcaaattattgtcgtgatcgtatgcatttggctttggcggaggagatagaacttgttaaggagggcctagttcacacaagtatcaaagataattgcctagagcaatggaataaggcattttccaattgttttcttaaggttgatgctgaagttggagggaaggatagtcttgatcctgttgcccctgaaacagttggttccactgctgttgtggcccttatttgttcgtctcatatcatagtggcaaactgtggtgattcaagagcagttctgtgtcgtgggaaagaacccatggcattgtcagtggatcataaaccaaatcgagaagatgaatatgcaagaattgaggcagctggaggcaaggtcatacaatggaatgggcatcgtgtgtttggtgttcttgctatgtcaaggtcaataggcgatagatatttaaaaccatggatcattccagatccagaagtgatgtttattcctcgaaccaaagatgatgaatgcctcattttagccagtgatggtttgtgggatgttatgacgaatgaagaagcgtgtgaccttgctcggagacgaatactcttatggcacaagaagaatggtgttacacttccactggaaagaggtgagggaattgatcctgctgctcaagcagcggcggagttcctttccagccgtgcccttcaaaaaggaagcaaggacaacatcacggtgattgtgatagatttgaaggctcagaggaagtttaaaagcaaaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

548

Amino Acids

59.1

Weight (kDa)

4.65

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450
malus_domestica	MD08G1066300.v1.1 MD15G1054500.v1.1
prunus_persica	Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1
pyrus_communis	pycom08g05500 pycom15g05160
rosa_chinensis	RchiOBHm_Chr6g0311361
rosa_laevigata	RLG00000010413
rosa_multiflora	Rmu_sc0008536.1_g000009
rosa_roxburghii	Rroxscaffold_7G00157690
rosa_rugosa	Rorug06G0387800 Rorug06G0387900 Rorug06G0388000 Rorug06G0388100 Rorug06G0388200
rosa_samantha	Rh6AG502500 Rh6BG513200 Rh6CG519000 Rh6DG505200
rosa_wichuraiana	Rw6G043760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	1 cut(s)	17
AciI	CCGC	8 cut(s)	11, 17, 110, 152, 673, 929, 1541, 1544
AclWI	GGATC	7 cut(s)	245, 551, 1058, 1206, 1340, 1343, 1517
AcuI	CTGAAG	2 cut(s)	468, 1059
AfaI	GTAC	3 cut(s)	434, 765, 813
AfiI	CCNNNNNNNGG	3 cut(s)	707, 726, 814
AflII	CTTAAG	2 cut(s)	89, 1025
AgsI	TTSAA	7 cut(s)	531, 635, 777, 791, 1152, 1571, 1615
AjnI	CCWGG	2 cut(s)	134, 426
AluBI	AGCT	6 cut(s)	65, 94, 161, 372, 408, 1244
AluI	AGCT	6 cut(s)	65, 94, 161, 372, 408, 1244
Alw26I	GTCTC	4 cut(s)	431, 533, 1125, 1450
AlwI	GGATC	7 cut(s)	245, 551, 1058, 1206, 1340, 1343, 1517
AoxI	GGCC	2 cut(s)	955, 1104
ApeKI	GCWGC	4 cut(s)	158, 1241, 1529, 1538
ArsI	GACNNNNNNTTYG	2 cut(s)	651, 683
Asp700I	GAANNNNTTC	1 cut(s)	696
AspS9I	GGNCC	2 cut(s)	955, 1105
AsuHPI	GGTGA	8 cut(s)	124, 365, 509, 536, 815, 1157, 1523, 1609
BaeGI	GKGCMC	1 cut(s)	1567
BaeI	ACNNNNGTAYC	2 cut(s)	955, 988
BanI	GGYRCC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	739
BbvI	GCAGC	4 cut(s)	170, 1253, 1516, 1550
BccI	CCATC	6 cut(s)	304, 625, 736, 812, 863, 1400
BceAI	ACGGC	1 cut(s)	1545
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	2 cut(s)	136, 428
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	4 cut(s)	431, 533, 1125, 1450
BfaI	CTAG	2 cut(s)	959, 989
BfmI	CTRYAG	2 cut(s)	60, 468
BfrI	CTTAAG	2 cut(s)	89, 1025
BisI	GCNGC	6 cut(s)	159, 673, 1242, 1530, 1539, 1542
BlsI	GCNGC	6 cut(s)	160, 674, 1243, 1531, 1540, 1543
BmcAI	AGTACT	1 cut(s)	813
Bme1390I	CCNGG	2 cut(s)	136, 428
BmgT120I	GGNCC	2 cut(s)	955, 1105
BmiI	GGNNCC	2 cut(s)	21, 1090
BmrFI	CCNGG	2 cut(s)	136, 428
BmsI	GCATC	3 cut(s)	739, 1024, 1282
BpiI	GAAGAC	1 cut(s)	739
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpmI	CTGGAG	1 cut(s)	1266
Bpu10I	CCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	258, 1518
BsaJI	CCNNGG	3 cut(s)	580, 1182, 1331
BsaXI	ACNNNNNCTCC	2 cut(s)	1239, 1269
Bsc4I	CCNNNNNNNGG	3 cut(s)	707, 726, 814
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	5 cut(s)	304, 598, 819, 1401, 1506
Bse3DI	GCAATG	1 cut(s)	1001
BseBI	CCWGG	2 cut(s)	136, 428
BseDI	CCNNGG	3 cut(s)	580, 1182, 1331
BseGI	GGATG	3 cut(s)	716, 823, 1423
BseLI	CCNNNNNNNGG	3 cut(s)	707, 726, 814
BseMI	GCAATG	1 cut(s)	1001
BseMII	CTCAG	7 cut(s)	54, 138, 399, 452, 759, 899, 1634
BseNI	ACTGG	5 cut(s)	304, 598, 819, 1401, 1506
BseRI	GAGGAG	3 cut(s)	258, 261, 947
BseSI	GKGCMC	1 cut(s)	1567
BseXI	GCAGC	4 cut(s)	170, 1253, 1516, 1550
BseYI	CCCAGC	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	2 cut(s)	15, 289
BshFI	GGCC	2 cut(s)	957, 1106
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	2 cut(s)	15, 289
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	707, 726, 814
BsmAI	GTCTC	4 cut(s)	431, 533, 1125, 1450
BsmBI	CGTCTC	2 cut(s)	1125, 1450
BsmI	GAATGC	1 cut(s)	1391
BsnI	GGCC	2 cut(s)	957, 1106
Bsp1286I	GDGCHC	1 cut(s)	1567
Bsp19I	CCATGG	2 cut(s)	1182, 1331
BspACI	CCGC	8 cut(s)	11, 17, 110, 152, 673, 929, 1541, 1544
BspANI	GGCC	2 cut(s)	957, 1106
BspCNI	CTCAG	7 cut(s)	53, 139, 398, 453, 760, 898, 1633
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	21, 1090
BspPI	GGATC	7 cut(s)	245, 551, 1058, 1206, 1340, 1343, 1517
BspT107I	GGYRCC	1 cut(s)	19
BspTI	CTTAAG	2 cut(s)	89, 1025
BsrDI	GCAATG	1 cut(s)	1001
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	5 cut(s)	304, 598, 819, 1401, 1506
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	3 cut(s)	580, 1182, 1331
BssT1I	CCWWGG	3 cut(s)	580, 1182, 1331
Bst2UI	CCWGG	2 cut(s)	136, 428
Bst4CI	ACNGT	7 cut(s)	107, 667, 763, 847, 1084, 1142, 1597
Bst6I	CTCTTC	1 cut(s)	225
BstAFI	CTTAAG	2 cut(s)	89, 1025
BstDEI	CTNAG	8 cut(s)	40, 147, 385, 461, 507, 768, 885, 1620
BstDSI	CCRYGG	2 cut(s)	1182, 1331
BstEII	GGTNACC	1 cut(s)	803
BstF5I	GGATG	3 cut(s)	716, 823, 1423
BstFNI	CGCG	1 cut(s)	17
BstMAI	GTCTC	4 cut(s)	431, 533, 1125, 1450
BstMCI	CGRYCG	2 cut(s)	15, 289
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 512, 1103, 1535, 1538
BstNI	CCWGG	2 cut(s)	136, 428
BstPI	GGTNACC	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	134, 426
BstSFI	CTRYAG	2 cut(s)	60, 468
BstSLI	GKGCMC	1 cut(s)	1567
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	170, 1253, 1516, 1550
BstV2I	GAAGAC	1 cut(s)	739
BstX2I	RGATCY	2 cut(s)	250, 1345
BstYI	RGATCY	2 cut(s)	250, 1345
BsuRI	GGCC	2 cut(s)	957, 1106
BtgI	CCRYGG	2 cut(s)	1182, 1331
BtsCI	GGATG	3 cut(s)	716, 823, 1423
BtsI	GCAGTG	2 cut(s)	682, 1092
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	955, 1105
Csp6I	GTAC	3 cut(s)	433, 764, 812
CspCI	CAANNNNNGTGG	4 cut(s)	549, 584, 1081, 1116
CviAII	CATG	7 cut(s)	73, 599, 823, 875, 1183, 1332, 1644
CviQI	GTAC	3 cut(s)	433, 764, 812
DdeI	CTNAG	8 cut(s)	40, 147, 385, 461, 507, 768, 885, 1620
DraI	TTTAAA	2 cut(s)	1326, 1633
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
EciI	GGCGGA	2 cut(s)	944, 1559
Eco130I	CCWWGG	3 cut(s)	580, 1182, 1331
Eco57I	CTGAAG	2 cut(s)	468, 1059
Eco91I	GGTNACC	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	955
EcoO65I	GGTNACC	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	134, 426
EcoT14I	CCWWGG	3 cut(s)	580, 1182, 1331
EcoT22I	ATGCAT	2 cut(s)	754, 918
ErhI	CCWWGG	3 cut(s)	580, 1182, 1331
Esp3I	CGTCTC	2 cut(s)	1125, 1450
FaeI	CATG	7 cut(s)	76, 602, 826, 878, 1186, 1335, 1647
FatI	CATG	7 cut(s)	72, 598, 822, 874, 1182, 1331, 1643
FauI	CCCGC	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	6 cut(s)	159, 673, 1242, 1530, 1539, 1542
FokI	GGATG	3 cut(s)	703, 830, 1430
Fsp4HI	GCNGC	6 cut(s)	159, 673, 1242, 1530, 1539, 1542
FspBI	CTAG	2 cut(s)	959, 989
GluI	GCNGC	6 cut(s)	159, 673, 1242, 1530, 1539, 1542
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	1266
HaeIII	GGCC	2 cut(s)	957, 1106
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	7 cut(s)	76, 602, 826, 878, 1186, 1335, 1647
HinfI	GANTC	6 cut(s)	125, 398, 527, 781, 861, 1148
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	8 cut(s)	124, 365, 509, 536, 815, 1157, 1523, 1609
Hpy166II	GTNNAC	3 cut(s)	433, 714, 964
Hpy188I	TCNGA	8 cut(s)	124, 360, 448, 607, 622, 843, 1455, 1623
Hpy188III	TCNNGA	7 cut(s)	275, 905, 1061, 1152, 1214, 1343, 1349
Hpy8I	GTNNAC	3 cut(s)	433, 714, 964
HpyAV	CCTTC	5 cut(s)	275, 443, 1045, 1577, 1609
HpyCH4III	ACNGT	7 cut(s)	107, 667, 763, 847, 1084, 1142, 1597
HpyCH4IV	ACGT	2 cut(s)	201, 306
HpyCH4V	TGCA	7 cut(s)	158, 215, 227, 339, 752, 916, 1229
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 512, 1103, 1535, 1538
HpyF3I	CTNAG	8 cut(s)	40, 147, 385, 461, 507, 768, 885, 1620
HpySE526I	ACGT	2 cut(s)	201, 306
Hsp92II	CATG	7 cut(s)	76, 602, 826, 878, 1186, 1335, 1647
Ksp22I	TGATCA	1 cut(s)	355
Lsp1109I	GCAGC	4 cut(s)	170, 1253, 1516, 1550
LweI	GCATC	3 cut(s)	739, 1024, 1282
MaeI	CTAG	2 cut(s)	959, 989
MaeII	ACGT	2 cut(s)	201, 306
MaeIII	GTNAC	8 cut(s)	3, 35, 130, 302, 454, 803, 1442, 1489
MboII	GAAGA	8 cut(s)	242, 341, 599, 744, 758, 1229, 1445, 1492
MfeI	CAATTG	3 cut(s)	487, 635, 1015
MflI	RGATCY	2 cut(s)	250, 1345
MhlI	GDGCHC	1 cut(s)	1567
MlyI	GAGTC	2 cut(s)	407, 870
MmeI	TCCRAC	1 cut(s)	1024
Mph1103I	ATGCAT	2 cut(s)	754, 918
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	5 cut(s)	90, 948, 1026, 1325, 1632
MslI	CAYNNNNRTG	2 cut(s)	721, 1595
MspA1I	CMGCKG	3 cut(s)	161, 1244, 1541
MspCI	CTTAAG	2 cut(s)	89, 1025
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	136, 428
MunI	CAATTG	3 cut(s)	487, 635, 1015
Mva1269I	GAATGC	1 cut(s)	1391
MvaI	CCWGG	2 cut(s)	136, 428
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	5 cut(s)	158, 512, 1103, 1535, 1538
NcoI	CCATGG	2 cut(s)	1182, 1331
NlaIII	CATG	7 cut(s)	76, 602, 826, 878, 1186, 1335, 1647
NlaIV	GGNNCC	2 cut(s)	21, 1090
NmuCI	GTSAC	4 cut(s)	3, 130, 803, 1442
NsiI	ATGCAT	2 cut(s)	754, 918
PctI	GAATGC	1 cut(s)	1391
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	4 cut(s)	125, 527, 781, 1148
PkrI	GCNGC	6 cut(s)	160, 674, 1243, 1531, 1540, 1543
Ple19I	CGATCG	1 cut(s)	289
PleI	GAGTC	2 cut(s)	406, 869
PpsI	GAGTC	2 cut(s)	406, 869
Psp6I	CCWGG	2 cut(s)	134, 426
PspEI	GGTNACC	1 cut(s)	803
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	2 cut(s)	134, 426
PspN4I	GGNNCC	2 cut(s)	21, 1090
PspPI	GGNCC	2 cut(s)	955, 1105
PsrI	GAACNNNNNNTAC	2 cut(s)	681, 713
PsuI	RGATCY	2 cut(s)	250, 1345
PvuI	CGATCG	1 cut(s)	289
PvuII	CAGCTG	2 cut(s)	161, 1244
RsaI	GTAC	3 cut(s)	434, 765, 813
RsaNI	GTAC	3 cut(s)	433, 764, 812
RseI	CAYNNNNRTG	2 cut(s)	721, 1595
SaqAI	TTAA	5 cut(s)	90, 948, 1026, 1325, 1632
SatI	GCNGC	6 cut(s)	159, 673, 1242, 1530, 1539, 1542
Sau96I	GGNCC	2 cut(s)	955, 1105
ScaI	AGTACT	1 cut(s)	813
SchI	GAGTC	2 cut(s)	407, 870
ScrFI	CCNGG	2 cut(s)	136, 428
SduI	GDGCHC	1 cut(s)	1567
SfaNI	GCATC	3 cut(s)	739, 1024, 1282
SfcI	CTRYAG	2 cut(s)	60, 468
SgrAI	CRCCGGYG	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	721, 1595
SmlI	CTYRAG	4 cut(s)	89, 273, 1025, 1533
SmoI	CTYRAG	4 cut(s)	89, 273, 1025, 1533
SsiI	CCGC	8 cut(s)	11, 17, 110, 152, 673, 929, 1541, 1544
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	2 cut(s)	959, 989
StyD4I	CCNGG	2 cut(s)	134, 426
StyI	CCWWGG	3 cut(s)	580, 1182, 1331
TaaI	ACNGT	7 cut(s)	107, 667, 763, 847, 1084, 1142, 1597
TaiI	ACGT	2 cut(s)	204, 309
TaqI	TCGA	2 cut(s)	1213, 1369
TaqII	GACCGA	1 cut(s)	822
TatI	WGTACW	1 cut(s)	811
TauI	GCSGC	2 cut(s)	675, 1544
TfiI	GAWTC	4 cut(s)	125, 527, 781, 1148
Tru1I	TTAA	5 cut(s)	90, 948, 1026, 1325, 1632
Tru9I	TTAA	5 cut(s)	90, 948, 1026, 1325, 1632
TseFI	GTSAC	4 cut(s)	3, 130, 803, 1442
TseI	GCWGC	4 cut(s)	158, 1241, 1529, 1538
Tsp45I	GTSAC	4 cut(s)	3, 130, 803, 1442
TspDTI	ATGAA	6 cut(s)	89, 369, 839, 1236, 1398, 1446
Vha464I	CTTAAG	2 cut(s)	89, 1025
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1099
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	2 cut(s)	959, 989
ZrmI	AGTACT	1 cut(s)	813
Zsp2I	ATGCAT	2 cut(s)	754, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.