Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002541

Physical Location & Seq

Genomic Coordinates Forward (+)

66980085 .. 66984298

Gene Structure 4214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCTGGGGAAAGTGAGGAAGATGATTGCATATCATTGGAGGGTGATCAGATACTTGATAGCTCTTGTTCATTCTCAGTGGCGAGTGAGTCAAGTAGCTTATGTTTAGAGGACTTCCTGGTGTACGAGACAACCTCTGAAGGAGTAACACTGAGTTCTATAGACATTGACAGGAACAGTTGTTTTGGTGATGTTGCTAAGGTGGCTGATATAGGTGATTCAAAAATTGAGACAGAGATCGCTACTGATCCACTTTCTTTTTCAGTGAGCCTTGGGGAAGAAACTGGTCATGAGTCTGACCCAAAGCCATCTGATGTTGTTGTTCAATTGCCTGTGGAAGTAGGGGTCAAAGAAACAGTCAGCCGCAGTGTTTTTGAGGTAGAATATGTTCCACTTTGGGGGTTTACATCCTTGTGTGGGAGAAGACCAGAGATGGAAGATGCATTAGCAACTGTACCTCAGTTTTCAAAGATTCCAATTCAAATGCTGATAGGTGACCGAGTACTGGATGGCATGAGCAAGTGTATAAATCAGAATGTTCATTTCTTTGGAGTCTATGATGGTCATGGAGGCTCTCAGGTGGCAAATTATTGTCGTGATCGTATGCATTTGGCTTTGGCGGAGGAGATAGAACTTGTTAAGGAGGGCCTAGTTCACACAAGTATCAAAGATAATTGCCTAGAGCAATGGAATAAGGCATTTTCCAACTGTTTTCTTAAGGTTGATGCTGAAGTTGGAGGGAAGGATAGTCTTGATCCTGTTGCCCCTGAAACAGTTGGTTCCACTGCTGTTGTGGCCCTTATTTGTTCGTCTCATATCATAGTGGCAAACTGTGGTGATTCAAGAGCAGTTCTGTGTCGTGGGAAAGAACCCATGGCATTGTCAGTGGATCATAAACCAAATCGAGAAGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAAGGTCATACAATGGAATGGGCATCGTGTGTTTGGTGTTCTTGCTATGTCAAGGTCAATAGGCGATAGATATTTAAAACCATGGATCATTCCAGATCCAGAAGTGATGTTTATTCCTCGAACCAAAGATGACGAATGCCTCATTTTAGCCAGTGATGGTTTATGGGATGTTATGACGAATGAAGAAGCGTGTGACCTTGCTCGGAGACGAATACTCTTATGGCACAAGAAGAATGGTGTTACACTTCCACTGGAAAGAGGTGAGGGAATTGATCCTGCTGCTCAAGCAGCGGCGGAGTTCCTTTCCAGCCGTGCCCTTCAAAAAGGAAGCAAGGACAACATCACGGTGATTGTGATAGATTTGAAGGCTCAGAGGAAGTTTAAAAGCAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

445

Amino Acids

48.69

Weight (kDa)

4.74

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	137 - 428	7.2e-66	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450
malus_domestica	MD08G1066300.v1.1 MD15G1054500.v1.1
prunus_persica	Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1
pyrus_communis	pycom08g05500 pycom15g05160
rosa_chinensis	RchiOBHm_Chr6g0311361
rosa_laevigata	RLG00000010413
rosa_multiflora	Rmu_sc0008536.1_g000009
rosa_roxburghii	Rroxscaffold_7G00157690
rosa_rugosa	Rorug06G0387800 Rorug06G0387900 Rorug06G0388000 Rorug06G0388100 Rorug06G0388200
rosa_samantha	Rh6AG502500 Rh6BG513200 Rh6CG519000 Rh6DG505200
rosa_wichuraiana	Rw6G043760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	364, 620, 1232, 1235
AclWI	GGATC	6 cut(s)	242, 749, 897, 1031, 1034, 1208
AcuI	CTGAAG	2 cut(s)	159, 750
AfaI	GTAC	3 cut(s)	125, 456, 504
AfiI	CCNNNNNNNGG	3 cut(s)	398, 417, 505
AflII	CTTAAG	1 cut(s)	716
AgsI	TTSAA	7 cut(s)	222, 326, 468, 482, 843, 1262, 1306
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	3 cut(s)	63, 99, 935
AluI	AGCT	3 cut(s)	63, 99, 935
Alw26I	GTCTC	4 cut(s)	122, 224, 816, 1141
AlwI	GGATC	6 cut(s)	242, 749, 897, 1031, 1034, 1208
AoxI	GGCC	2 cut(s)	646, 795
ApeKI	GCWGC	3 cut(s)	932, 1220, 1229
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	646, 796
AsuHPI	GGTGA	7 cut(s)	56, 200, 227, 506, 848, 1214, 1300
BaeGI	GKGCMC	1 cut(s)	1258
BaeI	ACNNNNGTAYC	2 cut(s)	646, 679
BbsI	GAAGAC	1 cut(s)	430
BbvI	GCAGC	3 cut(s)	944, 1207, 1241
BccI	CCATC	5 cut(s)	316, 427, 503, 554, 1091
BceAI	ACGGC	1 cut(s)	1236
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	4 cut(s)	122, 224, 816, 1141
BfaI	CTAG	2 cut(s)	650, 680
BfmI	CTRYAG	1 cut(s)	159
BfrI	CTTAAG	1 cut(s)	716
BisI	GCNGC	5 cut(s)	364, 933, 1221, 1230, 1233
BlsI	GCNGC	5 cut(s)	365, 934, 1222, 1231, 1234
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	646, 796
BmiI	GGNNCC	1 cut(s)	781
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	3 cut(s)	430, 715, 973
BpiI	GAAGAC	1 cut(s)	430
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	957
Bpu10I	CCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	1209
BsaJI	CCNNGG	3 cut(s)	271, 873, 1022
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 417, 505
Bse1I	ACTGG	4 cut(s)	289, 510, 1092, 1197
Bse3DI	GCAATG	1 cut(s)	692
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	271, 873, 1022
BseGI	GGATG	3 cut(s)	407, 514, 1114
BseLI	CCNNNNNNNGG	3 cut(s)	398, 417, 505
BseMI	GCAATG	1 cut(s)	692
BseMII	CTCAG	5 cut(s)	90, 143, 473, 590, 1325
BseNI	ACTGG	4 cut(s)	289, 510, 1092, 1197
BseRI	GAGGAG	1 cut(s)	638
BseSI	GKGCMC	1 cut(s)	1258
BseXI	GCAGC	3 cut(s)	944, 1207, 1241
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	2 cut(s)	648, 797
BslI	CCNNNNNNNGG	3 cut(s)	398, 417, 505
BsmAI	GTCTC	4 cut(s)	122, 224, 816, 1141
BsmBI	CGTCTC	2 cut(s)	816, 1141
BsmI	GAATGC	1 cut(s)	1082
BsnI	GGCC	2 cut(s)	648, 797
Bsp1286I	GDGCHC	1 cut(s)	1258
Bsp143I	GATC	9 cut(s)	46, 237, 247, 598, 754, 889, 1026, 1036, 1213
Bsp19I	CCATGG	2 cut(s)	873, 1022
BspACI	CCGC	4 cut(s)	364, 620, 1232, 1235
BspANI	GGCC	2 cut(s)	648, 797
BspCNI	CTCAG	5 cut(s)	89, 144, 472, 589, 1324
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	781
BspPI	GGATC	6 cut(s)	242, 749, 897, 1031, 1034, 1208
BspTI	CTTAAG	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	692
BsrI	ACTGG	4 cut(s)	289, 510, 1092, 1197
BssECI	CCNNGG	3 cut(s)	271, 873, 1022
BssMI	GATC	9 cut(s)	46, 237, 247, 598, 754, 889, 1026, 1036, 1213
BssT1I	CCWWGG	3 cut(s)	271, 873, 1022
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	7 cut(s)	179, 358, 454, 710, 775, 833, 1288
BstAFI	CTTAAG	1 cut(s)	716
BstDEI	CTNAG	6 cut(s)	76, 152, 198, 459, 576, 1311
BstDSI	CCRYGG	2 cut(s)	873, 1022
BstEII	GGTNACC	1 cut(s)	494
BstF5I	GGATG	3 cut(s)	407, 514, 1114
BstKTI	GATC	9 cut(s)	49, 240, 250, 601, 757, 892, 1029, 1039, 1216
BstMAI	GTCTC	4 cut(s)	122, 224, 816, 1141
BstMBI	GATC	9 cut(s)	46, 237, 247, 598, 754, 889, 1026, 1036, 1213
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 794, 1226, 1229
BstNI	CCWGG	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	1258
BstV1I	GCAGC	3 cut(s)	944, 1207, 1241
BstV2I	GAAGAC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	1036
BstYI	RGATCY	1 cut(s)	1036
BsuRI	GGCC	2 cut(s)	648, 797
BtgI	CCRYGG	2 cut(s)	873, 1022
BtsCI	GGATG	3 cut(s)	407, 514, 1114
BtsI	GCAGTG	2 cut(s)	373, 783
BtsIMutI	CAGTG	8 cut(s)	84, 149, 270, 373, 783, 891, 1099, 1190
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	646, 796
Csp6I	GTAC	3 cut(s)	124, 455, 503
CspCI	CAANNNNNGTGG	2 cut(s)	772, 807
CviAII	CATG	6 cut(s)	290, 514, 566, 874, 1023, 1335
CviQI	GTAC	3 cut(s)	124, 455, 503
DdeI	CTNAG	6 cut(s)	76, 152, 198, 459, 576, 1311
DpnI	GATC	9 cut(s)	48, 239, 249, 600, 756, 891, 1028, 1038, 1215
DpnII	GATC	9 cut(s)	46, 237, 247, 598, 754, 889, 1026, 1036, 1213
DraI	TTTAAA	2 cut(s)	1017, 1324
EciI	GGCGGA	2 cut(s)	635, 1250
Eco130I	CCWWGG	3 cut(s)	271, 873, 1022
Eco57I	CTGAAG	2 cut(s)	159, 750
Eco91I	GGTNACC	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	646
EcoO65I	GGTNACC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	3 cut(s)	271, 873, 1022
EcoT22I	ATGCAT	2 cut(s)	445, 609
ErhI	CCWWGG	3 cut(s)	271, 873, 1022
Esp3I	CGTCTC	2 cut(s)	816, 1141
FaeI	CATG	6 cut(s)	293, 517, 569, 877, 1026, 1338
FatI	CATG	6 cut(s)	289, 513, 565, 873, 1022, 1334
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	5 cut(s)	364, 933, 1221, 1230, 1233
FokI	GGATG	3 cut(s)	394, 521, 1121
Fsp4HI	GCNGC	5 cut(s)	364, 933, 1221, 1230, 1233
FspBI	CTAG	2 cut(s)	650, 680
GluI	GCNGC	5 cut(s)	364, 933, 1221, 1230, 1233
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	957
HaeIII	GGCC	2 cut(s)	648, 797
Hin1II	CATG	6 cut(s)	293, 517, 569, 877, 1026, 1338
HinfI	GANTC	6 cut(s)	89, 218, 293, 472, 552, 839
HphI	GGTGA	7 cut(s)	56, 200, 227, 506, 848, 1214, 1300
Hpy166II	GTNNAC	3 cut(s)	124, 405, 655
Hpy188I	TCNGA	7 cut(s)	51, 139, 298, 313, 534, 1146, 1314
Hpy188III	TCNNGA	7 cut(s)	290, 596, 752, 843, 905, 1034, 1040
Hpy8I	GTNNAC	3 cut(s)	124, 405, 655
HpyAV	CCTTC	4 cut(s)	134, 736, 1268, 1300
HpyCH4III	ACNGT	7 cut(s)	179, 358, 454, 710, 775, 833, 1288
HpyCH4V	TGCA	4 cut(s)	30, 443, 607, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 794, 1226, 1229
HpyF3I	CTNAG	6 cut(s)	76, 152, 198, 459, 576, 1311
Hsp92II	CATG	6 cut(s)	293, 517, 569, 877, 1026, 1338
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	9 cut(s)	46, 237, 247, 598, 754, 889, 1026, 1036, 1213
Lsp1109I	GCAGC	3 cut(s)	944, 1207, 1241
LweI	GCATC	3 cut(s)	430, 715, 973
MaeI	CTAG	2 cut(s)	650, 680
MaeIII	GTNAC	4 cut(s)	145, 494, 1133, 1180
MalI	GATC	9 cut(s)	48, 239, 249, 600, 756, 891, 1028, 1038, 1215
MboI	GATC	9 cut(s)	46, 237, 247, 598, 754, 889, 1026, 1036, 1213
MboII	GAAGA	7 cut(s)	32, 290, 435, 449, 920, 1136, 1183
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	1 cut(s)	1036
MhlI	GDGCHC	1 cut(s)	1258
MluCI	AATT	7 cut(s)	225, 326, 477, 586, 673, 924, 1209
MlyI	GAGTC	3 cut(s)	98, 302, 561
MmeI	TCCRAC	2 cut(s)	715, 729
Mph1103I	ATGCAT	2 cut(s)	445, 609
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	4 cut(s)	639, 717, 1016, 1323
MslI	CAYNNNNRTG	2 cut(s)	412, 1286
MspA1I	CMGCKG	2 cut(s)	935, 1232
MspCI	CTTAAG	1 cut(s)	716
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	1082
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	203, 794, 1226, 1229
NcoI	CCATGG	2 cut(s)	873, 1022
NdeII	GATC	9 cut(s)	46, 237, 247, 598, 754, 889, 1026, 1036, 1213
NlaIII	CATG	6 cut(s)	293, 517, 569, 877, 1026, 1338
NlaIV	GGNNCC	1 cut(s)	781
NmuCI	GTSAC	2 cut(s)	494, 1133
NsiI	ATGCAT	2 cut(s)	445, 609
PagI	TCATGA	1 cut(s)	289
PctI	GAATGC	1 cut(s)	1082
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	218, 472, 839
PkrI	GCNGC	5 cut(s)	365, 934, 1222, 1231, 1234
PleI	GAGTC	3 cut(s)	97, 301, 560
PpsI	GAGTC	3 cut(s)	97, 301, 560
Psp6I	CCWGG	1 cut(s)	117
PspEI	GGTNACC	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	781
PspPI	GGNCC	2 cut(s)	646, 796
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
PsuI	RGATCY	1 cut(s)	1036
PvuII	CAGCTG	1 cut(s)	935
RsaI	GTAC	3 cut(s)	125, 456, 504
RsaNI	GTAC	3 cut(s)	124, 455, 503
RseI	CAYNNNNRTG	2 cut(s)	412, 1286
SaqAI	TTAA	4 cut(s)	639, 717, 1016, 1323
SatI	GCNGC	5 cut(s)	364, 933, 1221, 1230, 1233
Sau3AI	GATC	9 cut(s)	46, 237, 247, 598, 754, 889, 1026, 1036, 1213
Sau96I	GGNCC	2 cut(s)	646, 796
ScaI	AGTACT	1 cut(s)	504
SchI	GAGTC	3 cut(s)	98, 302, 561
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	1258
SfaNI	GCATC	3 cut(s)	430, 715, 973
SfcI	CTRYAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	2 cut(s)	412, 1286
SmlI	CTYRAG	2 cut(s)	716, 1224
SmoI	CTYRAG	2 cut(s)	716, 1224
Sse9I	AATT	7 cut(s)	225, 326, 477, 586, 673, 924, 1209
SsiI	CCGC	4 cut(s)	364, 620, 1232, 1235
SspMI	CTAG	2 cut(s)	650, 680
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	3 cut(s)	271, 873, 1022
TaaI	ACNGT	7 cut(s)	179, 358, 454, 710, 775, 833, 1288
TaqI	TCGA	2 cut(s)	904, 1060
TaqII	GACCGA	1 cut(s)	513
TasI	AATT	7 cut(s)	225, 326, 477, 586, 673, 924, 1209
TatI	WGTACW	1 cut(s)	502
TauI	GCSGC	2 cut(s)	366, 1235
TfiI	GAWTC	3 cut(s)	218, 472, 839
Tru1I	TTAA	4 cut(s)	639, 717, 1016, 1323
Tru9I	TTAA	4 cut(s)	639, 717, 1016, 1323
TscAI	CASTG	8 cut(s)	84, 156, 270, 373, 790, 891, 1099, 1197
TseFI	GTSAC	2 cut(s)	494, 1133
TseI	GCWGC	3 cut(s)	932, 1220, 1229
Tsp45I	GTSAC	2 cut(s)	494, 1133
TspDTI	ATGAA	4 cut(s)	60, 530, 927, 1137
TspRI	CASTG	8 cut(s)	84, 156, 270, 373, 790, 891, 1099, 1197
Vha464I	CTTAAG	1 cut(s)	716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	2 cut(s)	650, 680
ZrmI	AGTACT	1 cut(s)	504
Zsp2I	ATGCAT	2 cut(s)	445, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.