Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002541

Physical Location & Seq

Genomic Coordinates Reverse (-)

53289428 .. 53290672

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0388100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTTACGGGATTCTTGGATTCCTAATACTATTACTCATAAACCACAACTGTTGGGACCGGTGCATGATAATTTGGCCAAGGTGAGTGAGTTGATTATTCGTCCTAATTTTTGGGATGAGTATAAAATTCGTTCCACTTTTATACACTCAGATGCAGAAGCTATTCTAGCAATTCTTTTGACTGCTAGAAGTCTGGATGATAGATTGACTTGGCATTTGGGGAAACAAGGTATGTTTACTGTCAAATCTGCATATCATCATGCTTTCTCTAAAACTGCATCTACTCTTTCTCCTTCTGTTGTGAGTAATCAAAGAGTGTGGAAGAACATTTGGCATGCCAAAATCCCTAGCACGGCAAAGGGAACTAGGAAAATTTTGAAGTGGCAGTGCCCTCCTGTGGGTTGGTTGAAGGTGAATTTTGATGGAGCTTTTAGTCCGAGCTCTGGCAAAGCAGCAATTGGTTTCTTAGTCCGTGACTCTCAAGGGACTTTTTTGGGAGCAGGGGGGAAGGTAGTTACTCGAGTTCAGTCTGCTGAACATGTCGAGCTCTTGGCTTGTAAGGAAGCATTTGGTTATGTGATGGAACATGGTCTATGTCCAGTAATTTTAGAGACTGATTGTTTGGTTTTGAAGCAACAAGTGTGTCAGGAGGAGCTGCAAAATTATTCTATTCTTGGAAGGTTATATGAGGACCTCAGACAAGATTTGAAAAAGGTGAACCAAGTTAGAATTATTCATGCTAGAAGAGAGGCAAACATGGCTGCGCACAAATTGGTAGCTCATGCTGCAGATTTTGATCAAGCTTTCTTTTGGTCAAATATTCCTTCCTTCATTCACGATGTAATAGAATCTGAGAAATGTATTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

289

Amino Acids

32.59

Weight (kDa)

8.97

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	139 - 262	3.8e-23	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450
malus_domestica	MD08G1066300.v1.1 MD15G1054500.v1.1
prunus_persica	Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1
pyrus_communis	pycom08g05500 pycom15g05160
rosa_chinensis	RchiOBHm_Chr6g0311361
rosa_laevigata	RLG00000010413
rosa_multiflora	Rmu_sc0008536.1_g000009
rosa_roxburghii	Rroxscaffold_7G00157690
rosa_rugosa	Rorug06G0387800 Rorug06G0387900 Rorug06G0388000 Rorug06G0388100 Rorug06G0388200
rosa_samantha	Rh6AG502500 Rh6BG513200 Rh6CG519000 Rh6DG505200
rosa_wichuraiana	Rw6G043760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	765
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	3 cut(s)	126, 372, 415
AfiI	CCNNNNNNNGG	4 cut(s)	352, 397, 398, 443
AflIII	ACRYGT	1 cut(s)	538
AgeI	ACCGGT	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	379, 409, 631, 709
AluBI	AGCT	7 cut(s)	161, 428, 441, 547, 655, 779, 803
AluI	AGCT	7 cut(s)	161, 428, 441, 547, 655, 779, 803
Alw21I	GWGCWC	2 cut(s)	443, 549
Alw26I	GTCTC	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	4 cut(s)	452, 655, 761, 785
ApoI	RAATTY	3 cut(s)	126, 372, 415
ArsI	GACNNNNNNTTYG	4 cut(s)	199, 231, 604, 636
AsiGI	ACCGGT	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	766
AspS9I	GGNCC	2 cut(s)	56, 691
AsuHPI	GGTGA	3 cut(s)	94, 424, 727
AvaI	CYCGRG	1 cut(s)	519
AvaII	GGWCC	2 cut(s)	56, 691
BaeGI	GKGCMC	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	77
BanII	GRGCYC	2 cut(s)	443, 549
Bbv12I	GWGCWC	2 cut(s)	443, 549
BbvI	GCAGC	4 cut(s)	464, 642, 748, 772
BccI	CCATC	2 cut(s)	416, 574
BceAI	ACGGC	1 cut(s)	369
BclI	TGATCA	1 cut(s)	796
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	5 cut(s)	167, 186, 348, 366, 741
BfmI	CTRYAG	1 cut(s)	786
BisI	GCNGC	4 cut(s)	453, 656, 762, 786
BlsI	GCNGC	4 cut(s)	454, 657, 763, 787
Bme18I	GGWCC	2 cut(s)	56, 691
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	2 cut(s)	56, 691
BmiI	GGNNCC	1 cut(s)	57
BmsI	GCATC	2 cut(s)	142, 287
BpuEI	CTTGAG	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	795
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	4 cut(s)	352, 397, 398, 443
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	599
Bse8I	GATNNNNATC	1 cut(s)	795
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	121, 202
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	4 cut(s)	352, 397, 398, 443
BseMII	CTCAG	3 cut(s)	162, 709, 843
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	665
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	4 cut(s)	464, 642, 748, 772
BshFI	GGCC	1 cut(s)	77
BshTI	ACCGGT	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	443, 549
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	69, 499
BslI	CCNNNNNNNGG	4 cut(s)	352, 397, 398, 443
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	2 cut(s)	69, 499
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	519
Bsp1286I	GDGCHC	3 cut(s)	392, 443, 549
Bsp143I	GATC	1 cut(s)	796
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	3 cut(s)	161, 708, 844
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	790
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	599
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	796
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	51, 241
Bst6I	CTCTTC	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	4 cut(s)	148, 466, 695, 852
BstF5I	GGATG	2 cut(s)	121, 202
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	1 cut(s)	799
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	1 cut(s)	796
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 758, 785
BstNSI	RCATGY	2 cut(s)	338, 542
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	392
BstV1I	GCAGC	4 cut(s)	464, 642, 748, 772
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	121, 202
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	1 cut(s)	766
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	56, 691
CspAI	ACCGGT	1 cut(s)	58
CspCI	CAANNNNNGTGG	4 cut(s)	33, 68, 299, 334
CviAII	CATG	8 cut(s)	65, 260, 335, 539, 587, 737, 757, 782
DdeI	CTNAG	4 cut(s)	148, 466, 695, 852
DpnI	GATC	1 cut(s)	798
DpnII	GATC	1 cut(s)	796
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
Ecl136II	GAGCTC	2 cut(s)	441, 547
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	443, 549
Eco47I	GGWCC	2 cut(s)	56, 691
Eco53kI	GAGCTC	2 cut(s)	441, 547
Eco88I	CYCGRG	1 cut(s)	519
EcoICRI	GAGCTC	2 cut(s)	441, 547
EcoO109I	RGGNCCY	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	443, 549
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	8 cut(s)	68, 263, 338, 542, 590, 740, 760, 785
FaqI	GGGAC	2 cut(s)	69, 499
FatI	CATG	8 cut(s)	64, 259, 334, 538, 586, 736, 756, 781
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	4 cut(s)	453, 656, 762, 786
FokI	GGATG	2 cut(s)	128, 209
FriOI	GRGCYC	2 cut(s)	443, 549
Fsp4HI	GCNGC	4 cut(s)	453, 656, 762, 786
FspBI	CTAG	5 cut(s)	167, 186, 348, 366, 741
FspI	TGCGCA	1 cut(s)	765
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	4 cut(s)	453, 656, 762, 786
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	766
Hin1II	CATG	8 cut(s)	68, 263, 338, 542, 590, 740, 760, 785
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HindIII	AAGCTT	1 cut(s)	801
HinfI	GANTC	4 cut(s)	11, 19, 476, 848
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	3 cut(s)	94, 424, 727
Hpy166II	GTNNAC	2 cut(s)	237, 718
Hpy188I	TCNGA	4 cut(s)	151, 438, 698, 853
Hpy188III	TCNNGA	3 cut(s)	194, 647, 836
Hpy8I	GTNNAC	2 cut(s)	237, 718
HpyAV	CCTTC	6 cut(s)	303, 403, 502, 672, 834, 838
HpyCH4III	ACNGT	2 cut(s)	51, 241
HpyCH4V	TGCA	6 cut(s)	64, 155, 251, 278, 658, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 758, 785
HpyF3I	CTNAG	4 cut(s)	148, 466, 695, 852
Hsp92II	CATG	8 cut(s)	68, 263, 338, 542, 590, 740, 760, 785
HspAI	GCGC	1 cut(s)	764
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	1 cut(s)	796
LmnI	GCTCC	3 cut(s)	425, 497, 652
LpnPI	CCDG	7 cut(s)	72, 179, 408, 429, 486, 612, 632
Lsp1109I	GCAGC	4 cut(s)	464, 642, 748, 772
LweI	GCATC	2 cut(s)	142, 287
MaeI	CTAG	5 cut(s)	167, 186, 348, 366, 741
MaeIII	GTNAC	3 cut(s)	3, 473, 514
MalI	GATC	1 cut(s)	798
MboI	GATC	1 cut(s)	796
MboII	GAAGA	2 cut(s)	334, 756
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	3 cut(s)	392, 443, 549
MlsI	TGGCCA	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	5 cut(s)	402, 643, 682, 704, 742
Mox20I	TGGCCA	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	1 cut(s)	868
MslI	CAYNNNNRTG	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	167, 758, 785
NdeII	GATC	1 cut(s)	796
NlaIII	CATG	8 cut(s)	68, 263, 338, 542, 590, 740, 760, 785
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	473
NsbI	TGCGCA	1 cut(s)	765
NspI	RCATGY	2 cut(s)	338, 542
PaeI	GCATGC	1 cut(s)	338
PaeR7I	CTCGAG	1 cut(s)	519
PciI	ACATGT	1 cut(s)	538
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	11, 19, 848
PinAI	ACCGGT	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	454, 657, 763, 787
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PpuMI	RGGWCCY	1 cut(s)	691
PscI	ACATGT	1 cut(s)	538
Psp124BI	GAGCTC	2 cut(s)	443, 549
Psp5II	RGGWCCY	1 cut(s)	691
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	56, 691
PspPPI	RGGWCCY	1 cut(s)	691
PspXI	VCTCGAGB	1 cut(s)	519
PstI	CTGCAG	1 cut(s)	790
RseI	CAYNNNNRTG	1 cut(s)	150
SacI	GAGCTC	2 cut(s)	443, 549
SaqAI	TTAA	1 cut(s)	868
SatI	GCNGC	4 cut(s)	453, 656, 762, 786
Sau3AI	GATC	1 cut(s)	796
Sau96I	GGNCC	2 cut(s)	56, 691
SchI	GAGTC	1 cut(s)	470
SduI	GDGCHC	3 cut(s)	392, 443, 549
SfaNI	GCATC	2 cut(s)	142, 287
SfcI	CTRYAG	1 cut(s)	786
Sfr274I	CTCGAG	1 cut(s)	519
SinI	GGWCC	2 cut(s)	56, 691
SlaI	CTCGAG	1 cut(s)	519
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	2 cut(s)	480, 519
SmoI	CTYRAG	2 cut(s)	480, 519
SphI	GCATGC	1 cut(s)	338
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	5 cut(s)	167, 186, 348, 366, 741
SstI	GAGCTC	2 cut(s)	443, 549
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	51, 241
TaqI	TCGA	2 cut(s)	520, 543
TfiI	GAWTC	3 cut(s)	11, 19, 848
Tru1I	TTAA	1 cut(s)	868
Tru9I	TTAA	1 cut(s)	868
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	4 cut(s)	452, 655, 761, 785
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	725, 820
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	56, 691
XapI	RAATTY	3 cut(s)	126, 372, 415
XceI	RCATGY	2 cut(s)	338, 542
XhoI	CTCGAG	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	5 cut(s)	167, 186, 348, 366, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.